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Publications

Chapters

Chen, M, Donohoe, K, Crossett, B, Schliep, MT & Larkum, A 2008, 'Molecular bases of antenna systems adaptation in a Chl d- containing organism' in Allen, JF, Ganntt, E, Golbeck, J & Osmond, B (eds), Photosynthesis: Energy from the Sun, Springer.
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Lepetit, Volke, Szabo, Hoffmann, Garab, Wilhelm & Goss 2008, 'The Oligomeric Antenna of the Diatom P. tricornutum — Localisation of Diadinoxanthin Cycle Pigments' in Photosynthesis. Energy from the Sun 14th International Congress on Photosynthesis, Springer Science & Business Media.
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Raven, JA 2008, 'Primary Production Processes' in Encyclopedia of Ocean Sciences: Second Edition, pp. 585-589.
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Raven, JA, Roberts, K, Granum, E & Leegood, RC 2008, 'The ecology and evolution of single-cell C4-like photosynthesis in diatoms: Relevance to C4 rice' in Charting New Pathways to C4 Rice, pp. 297-314.
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Journal articles

Bosire, JO, Dahdouh-Guebas, F, Walton, M, Crona, BI, Lewis, RR, Field, C, Kairo, JG & Koedam, N 2008, 'Functionality of restored mangroves: A review', Aquatic Botany, vol. 89, no. 2, pp. 251-259.
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Collier, C, Lavery, P, Ralph, PJ & Masini, R 2008, 'Physiological characteristics of the seagrass Posidonia sinuosa along a depth-related gradient of light availability', Marine Ecology-Progress Series, vol. 353, pp. 65-79.
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Dâ¿¿Imperio, S, Lehr, CR, Oduro, H, Druschel, G, Kuhl, M & McDermott, TR 2008, 'Relative Importance of H2 and H2S as Energy Sources for Primary Production in Geothermal Springs', Applied and Environmental Microbiology, vol. 74, no. 18, pp. 5802-5808.
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Demir, E, Coyne, K, Doblin, MA, Handy, S & Hutchins, DA 2008, 'Assessment of microzooplankton grazing on Heterosigma akashiwo using a species-specific approach combining quantitative real-time PCR (QPCR) and dilution methods', Microbial Ecology, vol. 55, no. 4, pp. 583-594.
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Demir, E, Coyne, KJ, Doblin, MA, Handy, SM & Hutchins, DA 2008, 'Assessment of microzooplankton grazing on Heterosigma akashiwo using a species-specific approach combining quantitative real-time PCR (QPCR) and dilution methods (vol 55, pg 583, 2008)', MICROBIAL ECOLOGY, vol. 55, no. 4, pp. 581-582.
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Dufresne, A, Ostrowski, M, Scanlan, DJ, Garczarek, L, Mazard, S, Palenik, BP, Paulsen, IT, de Marsac, NT, Wincker, P, Dossat, C, Ferriera, S, Johnson, J, Post, AF, Hess, WR & Partensky, F 2008, 'Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria', GENOME BIOLOGY, vol. 9, no. 5.
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George, S, Tushar, KV, Unnikrishnan, KP, Hashim, KM & Balachandran, I 2008, 'Hemidesmus indicus (L.) R. Br. A review', Journal of Plant Sciences, vol. 3, no. 2, pp. 146-156.
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Gilbert, PM, Azanza, R, Burford, MA, Furuya, K, Abal, E, Al-Azri, A, Al-Yamani, F, Andersen, P, Anderson, DM, Beardall, J, Berg, GM, Brand, L, Bronk, D, Brookes, J, Burkholder, JM, Cembella, A, Cochlan, WP, Collier, JL, Collos, Y, Diaz, R, Doblin, MA, Drennen, T, Dyhrman, S, Fukuyo, Y, Furnas, M, Galloway, J, Graneli, E, Ha, D, Hallegraeff, GM, Harrison, J, Harrison, P, Heil, CA, Heimann, K, Howarth, R, Jauzein, M, Kana, AA, Kana, TM, Kim, H, Kudela, R, Legrand, C, Mallin, M, Mulholland, M, Murray, SA, O'Neil, J, Pitcher, G, Qi, Y, Rabalais, N, Raine, R, Seitzinger, S, Salomon, PS, Solomon, C, Stoecker, DK, Usup, G, Wilson, J, Yin, K, Zhou, M & Zhu, M 2008, 'Ocean urea fertilization for carbon credits poses high ecological risks', Marine Pollution Bulletin, vol. 56, no. 6, pp. 1049-1056.
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Gilman, E, Ellison, J, Duke, NC & Field, C 2008, 'Threats to mangroves from climate change and adaptation options: A review', Aquatic Botany, vol. 89, no. 2, pp. 237-250.
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Harel, M, Ben-Dov, E, Rasoulouniriana, D, Siboni, N, Kramarsky-Winter, E, Loya, Y, Barak, Z, Wiesman, Z & Kushmaro, A 2008, 'A new Thraustochytrid, strain Fng1, isolated from the surface mucus of the hermatypic coral Fungia granulosa', FEMS MICROBIOLOGY ECOLOGY, vol. 64, no. 3, pp. 378-387.
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Hennige, SJ, Smith, DJ, Perkins, R, Consalvey, M, Paterson, DM & Suggett, DJ 2008, 'Photoacclimation, growth and distribution of massive coral species in clear and turbid waters', Marine Ecology Progress Series, vol. 369, pp. 77-88.
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Hill, R & Ralph, PJ 2008, 'Dark-induced reduction of the plastoquinone pool in zooxanthellae of scleractinian corals and implications for measurements of chlorophyll a fluorescence', Symbiosis, vol. 46, pp. 45-56.
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Hill, R & Ralph, PJ 2008, 'Impact of bleaching stress on the function of the oxygen evolving complex of zooxanthellae from scleractinian corals', Journal of Phycology, vol. 44, no. 2, pp. 299-310.
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Howe, CJ, Barbrook, AC, Nisbet, RER, Lockhart, PJ & Larkum, AWD 2008, 'The origin of plastids', Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 363, no. 1504, pp. 2675-2685.
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Huete, A, Restrepo Coupe, N, Ratana, P, Didan, K, Saleska, SR, Ichii, K, Panuthai, S & Gamo, M 2008, 'Multiple site tower flux and remote sensing comparisons of tropical forest dynamics in Monsoon Asia', Agricultural and Forest Meteorology, vol. 148, no. 5, pp. 748-760.
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Hutyra, LR, Munger, JW, Hammond-Pyle, E, Saleska, SR, Restrepo Coupe, N, Daube, BC, de Camargo, PB & Wofsy, SC 2008, 'Resolving systematic errors in estimates of net ecosystem exchange of CO2 and ecosystem respiration in a tropical forest biome', Agricultural and Forest Meteorology, vol. 148, no. 8-9, pp. 1266-1279.
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Iglesias-Rodriguez, MD, Buitenhuis, ET, Raven, JA, Schofield, O, Poulton, AJ, Gibbs, S, Halloran, PR & de Baar, HJW 2008, 'Response to Comment on "Phytoplankton Calcification in a High-CO2 World"', SCIENCE, vol. 322, no. 5907.
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Jimenez Denness, IM, Kuhl, M, Larkum, A & Ralph, PJ 2008, 'Heat budget and thermal microenvironment of shallow-water corals: Do massive corals get warmer than branching corals?', Limnology And Oceanography, vol. 53, no. 4, pp. 1548-1561.
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Jones, MR, Raven, JA, Leith, ID, Cape, JN, Smith, RI & Fowler, D 2008, 'Short-term flux chamber experiment to quantify the deposition of gaseous N-15-NH3 to Calluna vulgaris', AGRICULTURAL AND FOREST METEOROLOGY, vol. 148, no. 6-7, pp. 893-901.
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Kazandjian, A, Shepherd, VA, Rodriguez-Lanetty, M, Nordemeier, W, Larkum, AWD & Quinnell, RG 2008, 'Isolation of symbiosomes and the symbiosome membrane complex from the zoanthid Zoanthus robustus', Phycologia, vol. 47, no. 3, pp. 294-306.
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Kilminster, KL, Walker, DI, Thompson, PA & Raven, JA 2008, 'Changes in growth, internode distance and nutrient concentrations of the seagrass Halophila ovalis with exposure to sediment sulphice', MARINE ECOLOGY PROGRESS SERIES, vol. 361, pp. 83-91.
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Kuehn, SF & Raven, JA 2008, 'Photosynthetic oscillation in individual cells of the marine diatom Coscinodiscus wailesii (Bacillariophyceae) revealed by microsensor measurements', PHOTOSYNTHESIS RESEARCH, vol. 95, no. 1, pp. 37-44.
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Kuhl, M & Polerecky, L 2008, 'Functional and structural imaging of phototrophic microbial communities and symbioses', Aquatic Microbial Ecology, vol. 53, no. 1, pp. 99-118.
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Kuhl, M, Holst, G, Larkum, A & Ralph, PJ 2008, 'Imaging of oxygen dynamics within the endolithic algal community of the massive coral porites lobata', Journal of Phycology, vol. 44, no. 3, pp. 541-550.
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Lambers, H, Raven, JA, Shaver, GR & Smith, SE 2008, 'Plant nutrient-acquisition strategies change with soil age', TRENDS IN ECOLOGY & EVOLUTION, vol. 23, no. 2, pp. 95-103.
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Martyn, AJ, Larkum, AWD, McConchie, R & Offord, CA 2008, 'Photoinhibition and changes in pigments associated with bract browning in waratahs (Telopea spp., Proteaceae)', Journal of Horticultural Science and Biotechnology, vol. 83, no. 3, pp. 367-373.
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Matthews, JL, Ismar, SMH & Hauber, ME 2008, 'Seaweed provisioning behaviour confers thermal benefit for nesting Australasian gannets (Morus serrator)', BEHAVIOUR, vol. 145, pp. 1823-1837.

Petrou, K, Doblin, MA, Smith, RA, Ralph, PJ, Shelly, K & Beardall, J 2008, 'State transitions and nonphotochemical quenching during a nutrient-induced fluorescence transient in phosphorus-starved Dunaliella tertiolecta', Journal of Phycology, vol. 44, pp. 1204-1211.
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Prasil, O, Suggett, DJ, Cullen, JJ, Babin, M & Govindjee, D 2008, 'Aquafluo 2007: chlorophyll fluorescence in aquatic sciences, an international conference held in Nové Hrady', Photosynthesis Research, vol. 95, no. 1, pp. 111-115.
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Raven, J 2008, 'Book Review: Christian Albrekt Larsen, The Institutional Logic of Welfare Attitudes: How Welfare Regimes Influence Public Support. Ashgate, Aldershot, 2006, 184 pp., £45.00 (hbk), ISBN 0754648575', Journal of European Social Policy, vol. 18, no. 2, pp. 205-205.
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Raven, JA 2008, 'Not drowning but photosynthesizing: probing plant plastrons', NEW PHYTOLOGIST, vol. 177, no. 4, pp. 841-845.
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Raven, JA 2008, 'Transpiration: how many functions?', NEW PHYTOLOGIST, vol. 179, no. 4, pp. 905-907.
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Raven, JA, Cockell, CS & De La Rocha, CL 2008, 'The evolution of inorganic carbon concentrating mechanisms in photosynthesis', PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, vol. 363, no. 1504, pp. 2641-2650.
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Raven, JA, Giordano, M & Beardall, J 2008, 'Insights into the evolution of CCMs from comparisons with other resource acquisition and assimilation processes', PHYSIOLOGIA PLANTARUM, vol. 133, no. 1, pp. 4-14.
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Reddy, CRK, Gupta, MK, Mantri, VA & Jha, B 2008, 'Seaweed protoplasts: status, biotechnological perspectives and needs', JOURNAL OF APPLIED PHYCOLOGY, vol. 20, no. 5, pp. 619-632.
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Roff, G, Ulstrup, K, Fine, M, Ralph, PJ & Hoegh-Guldberg, O 2008, 'Spatial heterogeneity of photosynthetic activity within diseased corals from the great barrier reef', Journal Of Phycology, vol. 44, no. 2, pp. 526-538.
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Ross, ON, Moore, CM, Suggett, DJ, MacIntyre, HL & Geider, RJ 2008, 'A model of photosynthesis and photo-protection based on reaction center damage and repair', Limnology and Oceanography, vol. 53, no. 5, pp. 1835-1852.
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Schwartz, TS, Murray, SA & Seebacher, F 2008, 'Novel reptilian uncoupling proteins: molecular evolution and gene expression during cold acclimation', Proceedings of the Royal Society of London Series B-Biological Sciences, vol. 275, no. 1637, pp. 979-985.
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Seymour, JR, Ahmed, T, Marcos, M & Stocker, R 2008, 'A microfluidic chemotaxis assay to study microbial behavior in diffusing nutrient patches', Limnology and Oceanography: Methods, vol. 6, pp. 477-488.
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Seymour, JR, Seuront, L, Doubell, MJ & Mitchel, JG 2008, 'Mesoscale and microscale spatial variability of bacteria and viruses during a Phaeocystis globosa bloom in the Eastern English Channel', Estuarine, Coastal and Shelf Science, vol. 80, no. 4, pp. 589-597.
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Siboni, N, Ben Dov E, Sivan A & Kushmaro A 2008, 'Coral-associated ammonium oxidizing crenarchaeota and their role in the coral holobiont nitrogen cycle', Coral Reef Symp, Ft. Lauderdale, Florida, 7-11 July, vol. Session number 8.
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Siboni, N, Ben-Dov, E, Sivan, A & Kushmaro, A 2008, 'Global distribution and diversity of coral-associated Archaea and their possible role in the coral holobiont nitrogen cycle', ENVIRONMENTAL MICROBIOLOGY, vol. 10, no. 11, pp. 2979-2990.
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Srinivasan, G, Unnikrishnan, K, Rema Shree, A & Balachandran, I 2008, 'HPLC estimation of berberine in Tinospora cordifolia and Tinospora sinensis', Indian Journal of Pharmaceutical Sciences, vol. 70, no. 1, pp. 96-99.
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Steunou, A, Jensen, SI, Brecht, E, Becraft, ED, Bateson, MM, Kilian, O, Bhaya, D, Ward, DM, Peters, JW, Grossman, AR & Kuhl, M 2008, 'Regulation of nif gene expression and the energetics of N2 fixation over the diel cycle in a hot spring microbial mat', ISME Journal, vol. 2, no. 4, pp. 364-378.
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Stocker, R, Seymour, JR, Samadani, A, Hunt, D & Polz, M 2008, 'Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches.', Proceedings of the National Academy of Sciences, vol. 105, no. 11, pp. 4209-4214.
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Sudhakar Raja, S, Unnikrishnan, KP, George, S, Remashree, AB, Udayan, PS, Tushar, KV & Balachandran, I 2008, 'Variation in vasicine content and pharmacognostic characters of morphotypes of Adhatoda zeylanica Medic', Journal of Plant Sciences, vol. 3, no. 1, pp. 61-68.
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Suggett, DJ, Warner, ME, Smith, DJ, Davey, P, Hennige, S & Baker, NR 2008, 'Photosynthesis and production of hydrogen peroxide by Symbiodinium (Pyrrhophyta) phylotypes with different thermal tolerances', Journal Of Phycology, vol. 44, no. 4, pp. 948-956.
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Sutherland, DL 2008, 'Surface-associated diatoms from marine habitats at Cape Evans, Antarctica, including the first record of living Eunotogramma marginopunctatum', POLAR BIOLOGY, vol. 31, no. 7, pp. 879-888.
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Szabo, M, Lepetit, B, Goss, R, Wilhelm, C, Mustardy, L & Garab, G 2008, 'Structurally flexible macro-organization of the pigment-protein complexes of the diatom Phaeodactylum tricornutum', Photosynthesis Research, vol. 95, no. 2-3, pp. 237-245.
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Titlyanov, EA, Kiyashko, SI, Titlyanova, TV, Kalita, TL & Raven, JA 2008, 'delta(13)C and delta(15)N values in reef corals Porites lutea and P-cylindrica and in their epilithic and endolithic algae', MARINE BIOLOGY, vol. 155, no. 4, pp. 353-361.
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Ulstrup, K, Hill, R, van Oppen, MJ, Larkum, A & Ralph, PJ 2008, 'Seasonal variation in the photo-physiology of homogeneous and heterogeneous Symbiodinium consortia in two scleractinian corals', Marine Ecology Progress Series, vol. 361, pp. 139-150.
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Unnikrishnan, KP, Raja, SS & Balachandran, I 2008, 'A Reverse Phase HPLC-UV and HPTLC Methods for Determination of Plumbagin in Plumbago indica and Plumbago zeylanica', INDIAN JOURNAL OF PHARMACEUTICAL SCIENCES, vol. 70, no. 6, pp. 844-847.
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Ward, DM, Cohan, FM, Bhaya, D, Heidelberg, JF, Kuhl, M & Grossman, AR 2008, 'Genomics, environmental genomics and the issue of microbial species', Heredity, vol. 100, no. 2, pp. 207-219.
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Zwirglmaier, K, Jardillier, L, Ostrowski, M, Mazard, S, Garczarek, L, Vaulot, D, Not, F, Massana, R, Ulloa, O & Scanlan, DJ 2008, 'Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes', ENVIRONMENTAL MICROBIOLOGY, vol. 10, no. 1, pp. 147-161.
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Conferences

Chen, M, Donohoe, K, Crossett, B, Schliep, MT & Larkum, A 2007, 'Molecular basis of antenna system adaptation in a Chl d- containing organism', Photosynthesis. Energy from the Sun: 14th International Congress on Photosynthesis, 14th International Congress on Photosynthesis, Springer, Glasgow, pp. 243-246.

Doubell, MJ, Seuront, L, Seymour, JR, Yamazaki, H & Mitchell, JG 2008, 'Microscale structure of a phytoplankton bloom.', Japan.

Hunt, DE, Seymour, JR, Wildschutte, HS, Stocker, R, Veneziano, D & Polz, ME 2008, 'Microscale clustering of bacteria around eukaryotes in the coastal ocean', United States.

Jeffries, TC, Newton, K, Leterme, S, Seymour, JR, Dinsdale, E, Roudnew, B, Smith, R, Seuront, L & Mitchell, JG 2008, 'Functional metagenomic profiling of microbial and viral communities in sediment along a naturally occurring salinity gradient', Cairns, Australia.

Newton, K, Jeffries, TC, Seymour, JR, Leterme, S, Mitchell, JG & Seuront, L 2008, 'Microbial abundance and diversity along a salinity gradient.', Cairns, Australia.

Patten, NL, Seymour, JR, Seuront, L, Harrison, P & Mitchell, JG 2008, 'Prokaryotic and viral abundances between different coral reef micro-habitats', Cairns, Australia.

Schliep, MT, Chen, M, Larkum, A & Quinnell, R 2007, 'The function of MgDVP in a chlorophyll d-containing organism', Photosynthesis. Energy from the Sun 14th International Congress on Photosynthesis, 14th International Congress on Photosynthesis, Springer, Glasgow, pp. 1125-1128.
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Stocker, R & Seymour, JR 2008, 'Ecological implications of chemotactic motility', Lucca (Barga), Italy.

Stocker, R & Seymour, JR 2008, 'Patchiness in the microbial world: insights from microfluidic studies.', United States.

Stocker, R, Seymour, JR & Marcos, M 2008, 'Microbial life in the ocean.', New Orleans, LA.

Wilson, KG & Ralph, PJ 2008, 'A comparison of the effects of Tapis crude oil and dispersed crude oil on subtidal Zostera capricorni', International Oil Spill Conference - IOSC 2008, Proceedings, pp. 859-864.
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Reports

Sutherland, D 2008, Synopsis of the invasive freshwater diatom “Didymo”, Christchurch.

Sutherland, D, Spigel, B & Drake, D 2008, Potential impacts to hydropower operations from increased nutrient concentrations in the Upper Waitaki Basin due to catchment land-use changes, Christchurch.

Sutherland, DL & Graynoth, E 2008, MTAD – Assessment of the effects of the Manapouri Tailrace Amended Discharge on the ecosystems of Lakes Te Anau, Manapouri and the Waiau Arm, Christchurch, NZ.