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Publications

Chapters

Hildebrand, M, Davis, A, Abbriano Burke, R, Pugsley, HR, Traller, JC, Smith, SR, Shrestha, RP, Cook, O, Sánchez-Alvarez, EL, Manandhar-Shrestha, K & Alderete, B 2015, 'Applications of Imaging Flow Cytometry for Microalgae' in Imaging Flow Cytometry Methods and Protocols, Humana Press.
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Kohli, GS, Farrell, H & Murray, SA 2015, 'Gambierdiscus, the cause of ciguatera fish poisoning: a review of progress in ecology and toxicology' in Luis Botana, Natalia.Vilarino (ed), Climate change and marine and freshwater toxins, Walter de Gruyter, Germany, pp. 273-312.

Murray, SA, Uwe, J & Kremp, A 2015, 'Alexandrium spp.: genetic and ecological factors influencing saxitoxin production and proliferation' in Botana, LM, Louzao, MC & Vilarino, N (eds), Climate Change and Marine and Freshwater Toxins, Walter de Gruyter, Germany, pp. 125-154.
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Journal articles

Ajani, PA 2015, 'Photo Credit, corrected after print 16 April 2015. Editorial 'Ocean wanderers' the image did not show marine phytoplankton.', Nature Climate Change, vol. 5, pp. 1-1.
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Ament, SA, Szelinger, S, Glusman, G, Ashworth, J, Hou, L, Akula, N, Shekhtman, T, Badner, JA, Brunkow, ME, Mauldin, DE, Stittrich, A-B, Rouleau, K, Detera-Wadleigh, SD, Nurnberger, JI, Edenberg, HJ, Gershon, ES, Schork, N, Price, ND, Gelinas, R, Hood, L, Craig, D, McMahon, FJ, Kelsoe, JR & Roach, JC 2015, 'Rare variants in neuronal excitability genes influence risk for bipolar disorder', PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, vol. 112, no. 11, pp. 3576-3581.
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Ampuero, D, Miranda, CE, Delgado, LE, Goyen, S & Weaver, S 2015, 'Empathy and critical thinking: primary students solving local environmental problems through outdoor learning', JOURNAL OF ADVENTURE EDUCATION AND OUTDOOR LEARNING, vol. 15, no. 1, pp. 64-78.
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Ampuero, DA, Miranda, C & Goyen, S 2015, 'Positive psychology in education for sustainable development at a primary-education institution', LOCAL ENVIRONMENT, vol. 20, no. 7, pp. 745-763.
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Arotsker, L, Kramarsky-Winter, E, Ben-Dov, E, Siboni, N & Kushmaro, A 2015, 'Changes in the bacterial community associated with black band disease in a Red Sea coral, Favia sp., in relation to disease phases', Diseases of Aquatic Organisms, vol. 116, no. 1, pp. 47-58.
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Barnes, MK, Tilstone, GH, Smyth, TJ, Widdicombe, CE, Gloël, J, Robinson, C, Kaiser, J & Suggett, DJ 2015, 'Drivers and effects of Karenia mikimotoi blooms in the western English Channel', Progress in Oceanography, vol. 137, no. B, pp. 456-469.
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Barnes, MK, Tilstone, GH, Suggett, DJ, Widdicombe, CE, Bruun, J, Martinez-Vicente, V & Smyth, TJ 2015, 'Temporal variability in total, micro- and nano-phytoplankton primary production at a coastal site in the Western English Channel', Progress in Oceanography, vol. 137, no. B, pp. 470-483.
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Barraza, V, Restrepo-Coupe, N, Huete, A, Grings, F & Van Gorsel, E 2015, 'Passive microwave and optical index approaches for estimating surface conductance and evapotranspiration in forest ecosystems', AGRICULTURAL AND FOREST METEOROLOGY, vol. 213, pp. 126-137.
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Becraft, ED, Wood, JM, Rusch, DB, Kuehl, M, Jensen, SI, Bryant, DA, Roberts, DW, Cohan, FM & Ward, DM 2015, 'The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park', FRONTIERS IN MICROBIOLOGY, vol. 6.
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Behrendt, L, Brejnrod, A, Schliep, M, Sorensen, SJ, Larkum, AWD & Kuhl, M 2015, 'Chlorophyll f-driven photosynthesis in a cavernous cyanobacterium', ISME JOURNAL, vol. 9, no. 9, pp. 2108-2111.
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Bramucci, AR, Labeeuw, L, Mayers, TJ, Saby, JA & Case, RJ 2015, 'A Small Volume Bioassay to Assess Bacterial/Phytoplankton Co-culture Using WATER-Pulse-Amplitude-Modulated (WATER-PAM) Fluorometry', JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, no. 97.
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Brodersen, KE, Lichtenberg, M, Paz, LC & Kühl, M 2015, 'Epiphyte-cover on seagrass (Zostera marina L.) leaves impedes plant performance and radial O2 loss from the below-ground tissue', Frontiers in Marine Science, vol. 2, no. AUG.
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Brodersen, KE, Nielsen, DA, Ralph, PJ & Kuhl, M 2015, 'Oxic microshield and local pH enhancement protects Zostera muelleri from sediment derived hydrogen sulphide', NEW PHYTOLOGIST, vol. 205, no. 3, pp. 1264-1276.
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Broich, M, Huete, A, Paget, M, Ma, X, Tulbure, M, Coupe, NR, Evans, B, Beringer, J, Devadas, R, Davies, K & Held, A 2015, 'A spatially explicit land surface phenology data product for science, monitoring and natural resources management applications', ENVIRONMENTAL MODELLING & SOFTWARE, vol. 64, pp. 191-204.
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Camp, EF, Krause, SL, Santos, LMF, Naumann, MS, Kikuchi, RKP, Smith, DJ, Wild, C & Suggett, DJ 2015, 'The “Flexi-Chamber”: A Novel Cost-Effective In Situ Respirometry Chamber for Coral Physiological Measurements', PLoS One, vol. 10, no. 10, pp. 1-21.
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Carney, RL, Mitrovic, SM, Jeffries, T, Westhorpe, D, Curlevski, N & Seymour, JR 2015, 'River bacterioplankton community responses to a high inflow event', Aquatic Microbial Ecology, vol. 75, no. 3, pp. 187-205.
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Chan, Y-W, Millard, AD, Wheatley, PJ, Holmes, AB, Mohr, R, Whitworth, AL, Mann, NH, Larkum, AWD, Hess, WR, Scanlan, DJ & Clokie, MRJ 2015, 'Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacterium Acaryochloris marina', ENVIRONMENTAL MICROBIOLOGY, vol. 17, no. 11, pp. 4239-4252.
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Commault, AS, Barrière, F, Lapinsonnière, L, Lear, G, Bouvier, S & Weld, RJ 2015, 'Influence of inoculum and anode surface properties on the selection of Geobacter-dominated biofilms', Bioresource Technology, vol. 195, pp. 265-272.
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Commault, AS, Lear, G & Weld, RJ 2015, 'Maintenance of Geobacter-dominated biofilms in microbial fuel cells treating synthetic wastewater', Bioelectrochemistry, vol. 106, no. Part A, pp. 150-158.
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Craggs, R, Park, J, Sutherland, D & Heubeck, S 2015, 'Economic construction and operation of hectare-scale wastewater treatment enhanced pond systems', JOURNAL OF APPLIED PHYCOLOGY, vol. 27, no. 5, pp. 1913-1922.
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D Ainsworth, T, Krause, L, Bridge, T, Torda, G, Raina, J-B, Zakrzewski, M, Gates, RD, Padilla-Gamiño, JL, Spalding, HL, Smith, C, Woolsey, ES, Bourne, DG, Bongaerts, P, Hoegh-Guldberg, O & Leggat, W 2015, 'The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts', ISME Journal, vol. 9, pp. 2261-2274.
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Edwards, D, Cherns, L & Raven, JA 2015, 'Could land-based early photosynthesizing ecosystems have bioengineered the planet in mid-Palaeozoic times?', PALAEONTOLOGY, vol. 58, no. 5, pp. 803-837.
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Ertan, H, Cassel, C, Verma, A, Poljak, A, Charlton, T, Aldrich-Wright, J, Omar, SM, Siddiqui, KS & Cavicchioli, R 2015, 'A new broad specificity alkaline metalloprotease from a Pseudomonas sp isolated from refrigerated milk: Role of calcium in improving enzyme productivity', JOURNAL OF MOLECULAR CATALYSIS B-ENZYMATIC, vol. 113, pp. 1-8.
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Everett, JD & Doblin, MA 2015, 'Characterising primary productivity measurements across a dynamic western boundary current region', DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS, vol. 100, pp. 105-116.
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Exton, DA, McGenity, TJ, Steinke, M, Smith, DJ & Suggett, DJ 2015, 'Uncovering the volatile nature of tropical coastal marine ecosystems in a changing world.', Global change biology, vol. 21, no. 4, pp. 1383-1394.
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Farrell, H, Seebacher, F, O'Connor, W, Zammit, A, Harwood, DT & Murray, S 2015, 'Warm temperature acclimation impacts metabolism of paralytic shellfish toxins from Alexandrium minutum in commercial oysters.', Global Change Biology, vol. 21, no. 9, pp. 3402-3413.
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Flynn, KJ, St John, M, Raven, JA, Skibinski, DOF, Allen, JI, Mitra, A & Hofmann, EE 2015, 'HORIZONS: Acclimation, adaptation, traits and trade-offs in plankton functional type models: Reconciling terminology for biology and modelling', Journal of Plankton Research, vol. 37, no. 4, pp. 683-691.
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Forgan, DH, Mead, A, Cockell, CS & Raven, JA 2015, 'Surface flux patterns on planets in circumbinary systems and potential for photosynthesis', INTERNATIONAL JOURNAL OF ASTROBIOLOGY, vol. 14, no. 3, pp. 465-478.
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Frommlet, JC, Sousa, ML, Alves, A, Vieira, SI, Suggett, DJ & Serodio, J 2015, 'Coral symbiotic algae calcify ex hospite in partnership with bacteria', PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, vol. 112, no. 19, pp. 6158-6163.
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Fujise, L, Suggett, DJ, Frommlet, JC, Serodio, J & Ralph, PJ 2015, 'TURNING UP THE HEAT ON SYMBIODINIUM CELL CYCLE ANALYSIS', EUROPEAN JOURNAL OF PHYCOLOGY, vol. 50, pp. 58-59.

Gao, Y, Yu, R-C, Murray, SA, Chen, J-H, Kang, Z-J, Zhang, Q-C, Kong, F-Z & Zhou, M-J 2015, 'High Specificity of a Quantitative PCR Assay Targeting a Saxitoxin Gene for Monitoring Toxic Algae Associated with Paralytic Shellfish Toxins in the Yellow Sea', APPLIED AND ENVIRONMENTAL MICROBIOLOGY, vol. 81, no. 20, pp. 6973-6981.
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Gardner, SG, Nielsen, DA, Petrou, K, Larkum, AWD & Ralph, PJ 2015, 'Characterisation of coral explants: a model organism for cnidarian-dinoflagellate studies', CORAL REEFS, vol. 34, no. 1, pp. 133-142.
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Giordano, M, Palmucci, M & Raven, JA 2015, 'Growth rate hypothesis and efficiency of protein synthesis under different sulphate concentrations in two green algae', PLANT CELL AND ENVIRONMENT, vol. 38, no. 11, pp. 2313-2317.
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Golicz, AA, Schliep, M, Lee, HT, Larkum, AWD, Dolferus, R, Batley, J, Chan, C-KK, Sablok, G, Ralph, PJ & Edwards, D 2015, 'Genome-wide survey of the seagrass Zostera muelleri suggests modification of the ethylene signalling network', JOURNAL OF EXPERIMENTAL BOTANY, vol. 66, no. 5, pp. 1489-1498.
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Grob, C, Jardillier, L, Hartmann, M, Ostrowski, M, Zubkov, MV & Scanlan, DJ 2015, 'Cell-specific CO2 fixation rates of two distinct groups of plastidic protists in the Atlantic Ocean remain unchanged after nutrient addition', ENVIRONMENTAL MICROBIOLOGY REPORTS, vol. 7, no. 2, pp. 211-218.
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Hassler, CS, Norman, L, Nichols, CAM, Clementson, LA, Robinson, C, Schoemann, V, Watson, RJ & Doblin, MA 2015, 'Iron associated with exopolymeric substances is highly bioavailable to oceanic phytoplankton', MARINE CHEMISTRY, vol. 173, pp. 136-147.
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Hennon, GMM, Ashworth, J, Groussman, RD, Berthiaume, C, Morales, RL, Baliga, NS, Orellana, MV & Armbrust, EV 2015, 'Diatom acclimation to elevated CO2 via cAMP signalling and coordinated gene expression', NATURE CLIMATE CHANGE, vol. 5, no. 8, pp. 761-U179.
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Henschke, N, Everett, JD, Suthers, IM, Smith, JA, Hunt, BPV, Doblin, MA & Taylor, MD 2015, 'Zooplankton trophic niches respond to different water types of the western Tasman Sea: A stable isotope analysis', DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS, vol. 104, pp. 1-8.
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Hill, R, Bellgrove, A, Macreadie, PI, Petrou, K, Beardall, J, Steven, A & Ralph, PJ 2015, 'Can macroalgae contribute to blue carbon? An Australian perspective', LIMNOLOGY AND OCEANOGRAPHY, vol. 60, no. 5, pp. 1689-1706.
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Hoeksema, BW & Matthews, JL 2015, 'Partial bleaching in an assemblage of small apozooxanthellate corals of the genera Heteropsammia and Heterocyathus', CORAL REEFS, vol. 34, no. 4, pp. 1227-1227.
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Hong, Y, Burford, MA, Ralph, PJ & Doblin, MA 2015, 'Subtropical zooplankton assemblage promotes the harmful cyanobacterium Cylindrospermopsis raciborskii in a mesocosm experiment', JOURNAL OF PLANKTON RESEARCH, vol. 37, no. 1, pp. 90-101.
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Jeffries, TC, Ostrowski, M, Williams, RB, Xie, C, Jensen, RM, Grzymski, JJ, Senstius, SJ, Givskov, M, Hoeke, R, Philip, GK, Neches, RY, Drautz-Moses, DI, Chénard, C, Paulsen, IT & Lauro, FM 2015, 'Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll', Scientific Reports, vol. 5, pp. 15383-15383.
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Johnston, EL, Mayer-Pinto, M, Hutchings, PA, Marzinelli, EM, Ahyong, ST, Birch, G, Booth, DJ, Creese, RG, Doblin, MA, Figueira, W, Gribben, PE, Pritchard, T, Roughan, M, Steinberg, PD & Hedge, LH 2015, 'Sydney Harbour: what we do and do not know about a highly diverse estuary', MARINE AND FRESHWATER RESEARCH, vol. 66, no. 12, pp. 1073-1087.
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Jones, EM, Doblin, MA, Matear, R & King, E 2015, 'Assessing and evaluating the ocean-colour footprint of a regional observing system', JOURNAL OF MARINE SYSTEMS, vol. 143, pp. 49-61.
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Joseph, S, Husson, O, Graber, ER, van Zwieten, L, Taherymoosavi, S, Thomas, T, Nielsen, S, Ye, J, Pan, G, Chia, C, Munroe, P, Allen, J, Lin, Y, Fan, X & Donne, S 2015, 'The Electrochemical Properties of Biochars and How They Affect Soil Redox Properties and Processes', AGRONOMY-BASEL, vol. 5, no. 3, pp. 322-340.
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Joseph, S, Pow, D, Dawson, K, Mitchell, DRG, Rawal, A, Hook, J, Taherymoosavi, S, Van Zwieten, L, Rust, J, Donne, S, Munroe, P, Pace, B, Graber, E, Thomas, T, Nielsen, S, Ye, J, Lin, Y, Pan, G, Li, L & Solaiman, ZM 2015, 'Feeding Biochar to Cows: An Innovative Solution for Improving Soil Fertility and Farm Productivity', PEDOSPHERE, vol. 25, no. 5, pp. 666-679.
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Kaźmierczak, J, Fenchel, T, Kühl, M, Kempe, S, Kremer, B, Łącka, B & Małkowski, K 2015, 'Caco3 precipitation in multilayered cyanobacterial mats: Clues to explain the alternation of micrite and sparite layers in calcareous stromatolites', Life, vol. 5, no. 1, pp. 744-769.
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Kim, Y-M, Nowack, S, Olsen, MT, Becraft, ED, Wood, JM, Thiel, V, Klapper, I, Kuhl, M, Fredrickson, JK, Bryant, DA, Ward, DM & Metz, TO 2015, 'Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms', FRONTIERS IN MICROBIOLOGY, vol. 6.
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Kohli, GS, John, U, Figueroa, RI, Rhodes, LL, Harwood, DT, Groth, M, Bolch, CJS & Murray, SA 2015, 'Polyketide synthesis genes associated with toxin production in two species of Gambierdiscus (Dinophyceae)', BMC GENOMICS, vol. 16.
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Kolpen, M, Kragh, KN, Bjarnsholt, T, Line, L, Hansen, CR, Dalboge, CS, Hansen, N, Kuhl, M, Hoiby, N & Jensen, PO 2015, 'Denitrification by cystic fibrosis pathogens - Stenotrophomonas maltophilia is dormant in sputum', INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY, vol. 305, no. 1, pp. 1-10.
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Kopf, A, Bicak, M, Kottmann, R, Schnetzer, J, Kostadinov, I, Lehmann, K, Fernandez-Guerra, A, Jeanthon, C, Rahav, E, Ullrich, M, Wichels, A, Gerdts, G, Polymenakou, P, Kotoulas, G, Siam, R, Abdallah, RZ, Sonnenschein, EC, Cariou, T, O'Gara, F, Jackson, S, Orlic, S, Steinke, M, Busch, J, Duarte, B, Cacador, I, Canning-Clode, J, Bobrova, O, Marteinsson, V, Reynisson, E, Loureiro, CM, Luna, GM, Quero, GM, Loescher, CR, Kremp, A, DeLorenzo, ME, Ovreas, L, Tolman, J, LaRoche, J, Penna, A, Frischer, M, Davis, T, Katherine, B, Meyer, CP, Ramos, S, Magalhaes, C, Jude-Lemeilleur, F, Leopoldina Aguirre-Macedo, M, Wang, S, Poulton, N, Jones, S, Collin, R, Fuhrman, JA, Conan, P, Alonso, C, Stambler, N, Goodwin, K, Yakimov, MM, Baltar, F, Bodrossy, L, Van De Kamp, J, Frampton, DMF, Ostrowski, M, Van Ruth, P, Malthouse, P, Claus, S, Deneudt, K, Mortelmans, J, Pitois, S, Wallom, D, Salter, I, Costa, R, Schroeder, DC, Kandil, MM, Amaral, V, Biancalana, F, Santana, R, Pedrotti, ML, Yoshida, T, Ogata, H, Ingleton, T, Munnik, K, Rodriguez-Ezpeleta, N, Berteaux-Lecellier, V, Wecker, P, Cancio, I, Vaulot, D, Bienhold, C, Ghazal, H, Chaouni, B, Essayeh, S, Ettamimi, S, Zaid, EH, Boukhatem, N, Bouali, A, Chahboune, R, Barrijal, S, Timinouni, M, El Otmani, F, Bennani, M, Mea, M, Todorova, N, Karamfilov, V, ten Hoopen, P, Cochrane, G, L'Haridon, S, Bizsel, KC, Vezzi, A, Lauro, FM, Martin, P, Jensen, RM, Hinks, J, Gebbels, S, Rosselli, R, De Pascale, F, Schiavon, R, dos Santos, A, Villar, E, Pesant, S, Cataletto, B, Malfatti, F, Edirisinghe, R, Silveira, JAH, Barbier, M, Turk, V, Tinta, T, Fuller, WJ, Salihoglu, I, Serakinci, N, Ergoren, MC, Bresnan, E, Iriberri, J, Nyhus, PAF, Bente, E, Karlsen, HE, Golyshin, PN, Gasol, JM, Moncheva, S, Dzhembekova, N, Johnson, Z, Sinigalliano, CD, Gidley, ML, Zingone, A, Danovaro, R, Tsiamis, G, Clark, MS, Costa, AC, El Bour, M, Martins, AM, Collins, RE, Ducluzeau, A-L, Martinez, J, Costello, MJ, Amaral-Zettler, LA, Gilbert, JA, Davies, N, Field, D & Gloeckner, FO 2015, 'The ocean sampling day consortium', GIGASCIENCE, vol. 4.
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Koren, K & Kuhl, M 2015, 'A simple laminated paper-based sensor for temperature sensing and imaging', SENSORS AND ACTUATORS B-CHEMICAL, vol. 210, pp. 124-128.
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Koren, K, Brodersen, KE, Jakobsen, SL & Kuehl, M 2015, 'Optical Sensor Nanoparticles in Artificial Sediments-A New Tool To Visualize O-2 Dynamics around the Rhizome and Roots of Seagrasses', ENVIRONMENTAL SCIENCE & TECHNOLOGY, vol. 49, no. 4, pp. 2286-2292.
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Kumar, M, Pandya-Kumar, N, Dam, A, Haor, H, Mayzlish-Gati, E, Belausov, E, Wininger, S, Abu-Abied, M, McErlean, CSP, Bromhead, LJ, Prandi, C, Kapulnik, Y & Koltai, H 2015, 'Arabidopsis response to low-phosphate conditions includes active changes in actin filaments and PIN2 polarization and is dependent on strigolactone signalling', Journal of Experimental Botany, vol. 66, no. 5, pp. 1499-1510.
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Kumar, M, Pandya-Kumar, N, Kapulnik, Y & Koltai, H 2015, 'Strigolactone signaling in root development and phosphate starvation', Plant Signaling and Behavior, vol. 10, no. 7.
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Kumar, M, Reddy, CRK & Ralph, PJ 2015, 'Polyamines in morphogenesis and development: a promising research area in seaweeds.', Frontiers in plant science, vol. 6, pp. 27-27.
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Kuzhiumparambil, U, Watanabe, S & Fu, S 2015, 'Oxidation of testosterone by permanganate and its implication in sports drug testing', NEW JOURNAL OF CHEMISTRY, vol. 39, no. 3, pp. 1597-1602.
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Labeeuw, L, Martone, PT, Boucher, Y & Case, RJ 2015, 'Ancient origin of the biosynthesis of lignin precursors', BIOLOGY DIRECT, vol. 10.
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Lichtenberg, M & Kuehl, M 2015, 'Pronounced gradients of light, photosynthesis and O-2 consumption in the tissue of the brown alga Fucus serratus', NEW PHYTOLOGIST, vol. 207, no. 3, pp. 559-569.
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Luong, S, Kuzhiumparambil, U & Fu, S 2015, 'Elucidation of markers for monitoring morphine and its analogs in urine adulterated with pyridinium chlorochromate.', Bioanalysis, vol. 7, no. 18.
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Lutz, A, Raina, JB, Motti, CA, Miller, DJ & van Oppen, MJH 2015, 'Host Coenzyme Q Redox State Is an EarlyBiomarker of Thermal Stress in the CoralAcropora millepora', PLoS One, vol. 10, no. 10, pp. 1-18.
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Macreadie, PI, Trevathan-Tackett, SM, Skilbeck, CG, Sanderman, J, Curlevski, N, Jacobsen, G & Seymour, JR 2015, 'Losses and recovery of organic carbon from a seagrass ecosystem following disturbance', PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, vol. 282, no. 1817.
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Malik, A, Lenzen, M, Ralph, PJ & Tamburic, B 2015, 'Hybrid life-cycle assessment of algal biofuel production', BIORESOURCE TECHNOLOGY, vol. 184, pp. 436-443.
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Mayer-Pinto, M, Johnston, EL, Hutchings, PA, Marzinelli, EM, Ahyong, ST, Birch, G, Booth, DJ, Creese, RG, Doblin, MA, Figueira, W, Gribben, PE, Pritchard, T, Roughan, M, Steinberg, PD & Hedge, LH 2015, 'Sydney Harbour: a review of anthropogenic impacts on the biodiversity and ecosystem function of one of the world's largest natural harbours', MARINE AND FRESHWATER RESEARCH, vol. 66, no. 12, pp. 1088-1105.
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McCauley, JI, Meyer, BJ, Winberg, PC, Ranson, M & Skropeta, D 2015, 'Selecting Australian marine macroalgae based on the fatty acid composition and anti-inflammatory activity', JOURNAL OF APPLIED PHYCOLOGY, vol. 27, no. 5, pp. 2111-2121.
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Messer, LF, Doubell, M, Jeffries, TC, Brown, MV & Seymour, JR 2015, 'Prokaryotic and diazotrophic population dynamics within a large oligotrophic inverse estuary', AQUATIC MICROBIAL ECOLOGY, vol. 74, no. 1, pp. 1-15.
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Murray, SA, Diwan, R, Orr, RJS, Kohli, GS & John, U 2015, 'Gene duplication, loss and selection in the evolution of saxitoxin biosynthesis in alveolates', MOLECULAR PHYLOGENETICS AND EVOLUTION, vol. 92, pp. 165-180.
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Murray, SA, Kohli, GS, Farrell, H, Spiers, ZB, Place, AR, Dorantes-Aranda, JJ & Ruszczyk, J 2015, 'A fish kill associated with a bloom of Amphidinium carterae in a coastal lagoon in Sydney, Australia.', Harmful Algae, vol. 49, pp. 19-28.
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Najafpour, MM, Ghobadi, MZ, Larkum, AW, Shen, J-R & Alliakhverdiev, SI 2015, 'The biological water-oxidizing complex at the nano-bio interface', TRENDS IN PLANT SCIENCE, vol. 20, no. 9, pp. 559-568.
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Nielsen, DA, Pernice, M, Schliep, M, Sablok, G, Jeffries, TC, Kuehl, M, Wangpraseurt, D, Ralph, PJ & Larkum, AWD 2015, 'Microenvironment and phylogenetic diversity of Prochloron inhabiting the surface of crustose didemnid ascidians', ENVIRONMENTAL MICROBIOLOGY, vol. 17, no. 10, pp. 4121-4132.
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Nielsen, M, Revsbech, NP & Kuehl, M 2015, 'Microsensor measurements of hydrogen gas dynamics in cyanobacterial microbial mats', FRONTIERS IN MICROBIOLOGY, vol. 6.
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O'Malley-James, JT, Greaves, JS, Raven, JA & Cockell, CS 2015, 'In Search of Future Earths: Assessing the Possibility of Finding Earth Analogues in the Later Stages of Their Habitable Lifetimes', ASTROBIOLOGY, vol. 15, no. 5, pp. 400-411.
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Perdig ao, N, Heinrich, J, Stolte, C, Sabir, KS, Buckley, MJ, Tabor, B, Signal, B, Gloss, BS, Hammang, CJ, Rost, B & others 2015, 'Unexpected features of the dark proteome', Proceedings of the National Academy of Sciences, vol. 112, pp. 15898-15903.

Perez, PG, Zhang, R, Wang, X, Ye, J & Huang, D 2015, 'Characterization of the amino acid composition of soils under organic and conventional management after addition of different fertilizers', JOURNAL OF SOILS AND SEDIMENTS, vol. 15, no. 4, pp. 890-901.
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Pernice, M, Dunn, SR, Tonk, L, Dove, SG, Domart-Coulon, I, Hoppe, P, Schintlmeister, A, Wagner, M & Meibom, A 2015, 'A nanoscale secondary ion mass spectrometry study of dinoagellate functional diversity in reef-building corals', Environmental Microbiology, vol. 17, no. 10, pp. 3570-3580.
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Pulpitel, T, Pernice, M, Simpson, SJ & Ponton, F 2015, 'Tissue-Specific Immune Gene Expression in the Migratory Locust, Locusta Migratoria.', Insects, vol. 6, no. 2, pp. 368-380.
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Radford, D, Szabo, M, Raven, J & Ralph, PJ 2015, 'SATISFYING THE NUTRIENT TANK OF NANNOCHLOROPSIS OCULATA; CO-LIMITATION REDUCES FILLING EFFICIENCY', EUROPEAN JOURNAL OF PHYCOLOGY, vol. 50, pp. 138-139.

Rap, A, Spracklen, DV, Mercado, L, Reddington, CL, Haywood, JM, Ellis, RJ, Phillips, OL, Artaxo, P, Bonal, D, Coupe, NR & Butt, N 2015, 'Fires increase Amazon forest productivity through increases in diffuse radiation', GEOPHYSICAL RESEARCH LETTERS, vol. 42, no. 11, pp. 4654-4662.
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Raven, J & Ralph, PJ 2015, 'Enhanced biofuel production using optimality, pathway modification and waste minimization', Journal of Applied Phycology, vol. 27, pp. 1-31.
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Raven, JA 2015, 'COMPARTMENTATION OF DEFENSIVE COMPOUND SYNTHESIS IN A RED ALGA', JOURNAL OF PHYCOLOGY, vol. 51, no. 2, pp. 222-224.
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Raven, JA 2015, 'Implications of mutation of organelle genomes for organelle function and evolution', JOURNAL OF EXPERIMENTAL BOTANY, vol. 66, no. 19, pp. 5639-5650.
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Raven, JA & Griffiths, H 2015, 'Photosynthesis in reproductive structures: costs and benefits', JOURNAL OF EXPERIMENTAL BOTANY, vol. 66, no. 7, pp. 1699-1705.
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Rickelt, LF, Ottosen, LDM & Kuhl, M 2015, 'Etching of multimode optical glass fibers: A new method for shaping the measuring tip and immobilization of indicator dyes in recessed fiber-optic microprobes', SENSORS AND ACTUATORS B-CHEMICAL, vol. 211, pp. 462-468.
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Sablok, G, Raju, GVP, Mudunuri, SB, Prabha, R, Singh, DP, Baev, V, Yahubyan, G, Ralph, PJ & La Porta, N 2015, 'ChloroMitoSSRDB 2.00: more genomes, more repeats, unifying SSRs search patterns and on-the-fly repeat detection', DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.
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Sablok, G, Srivastva, AK, Suprasanna, P, Baev, V & Ralph, PJ 2015, 'isomiRs: Increasing Evidences of isomiRs Complexity in Plant Stress Functional Biology.', Frontiers in plant science, vol. 6, pp. 949-949.
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Schliep, M, Pernice, M, Sinutok, S, Bryant, CV, York, PH, Rasheed, MA & Ralph, PJ 2015, 'Evaluation of Reference Genes for RT-qPCR Studies in the Seagrass Zostera muelleri Exposed to Light Limitation', SCIENTIFIC REPORTS, vol. 5.
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Siboni, N, Abrego, D, Evenhuis, C, Logan, M & Motti, CA 2015, 'Adaptation to local thermal regimes by crustose coralline algaedoes not affect rates of recruitment in coral larvae', Coral Reefs, vol. 34, pp. 1243-1253.
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Silsbe, GM, Oxborough, K, Suggett, DJ, Forster, RM, Ihnken, S, Komarek, O, Lawrenz, E, Prasil, O, Rottgers, R, Sicner, M, Simis, SGH, Van Dijk, MA & Kromkamp, JC 2015, 'Toward autonomous measurements of photosynthetic electron transport rates: An evaluation of active fluorescence-based measurements of photochemistry', Limnology and Oceanography: Methods, vol. 13, no. 3, pp. 138-155.
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Suggett, DJ, Goyen, S, Evenhuis, C, Szabo, M, Pettay, DT, Warner, ME & Ralph, PJ 2015, 'Functional diversity of photobiological traits within the genus Symbiodinium appears to be governed by the interaction of cell size with cladal designation', New Phytologist, vol. 208, no. 2, pp. 370-381.
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Sutherland, DL, Howard-Williams, C, Turnbull, MH, Broady, PA & Craggs, RJ 2015, 'Enhancing microalgal photosynthesis and productivity in wastewater treatment high rate algal ponds for biofuel production', BIORESOURCE TECHNOLOGY, vol. 184, pp. 222-229.
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Sutherland, DL, Howard-Williams, C, Turnbull, MH, Broady, PA & Craggs, RJ 2015, 'Frequency of CO2 supply affects wastewater microalgal photosynthesis, productivity and nutrient removal efficiency in mesocosms: implications for full-scale high rate algal ponds', JOURNAL OF APPLIED PHYCOLOGY, vol. 27, no. 5, pp. 1901-1911.
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Sutherland, DL, Howard-Williams, C, Turnbull, MH, Broady, PA & Craggs, RJ 2015, 'The effects of CO2 addition along a pH gradient on wastewater microalgal photo-physiology, biomass production and nutrient removal', WATER RESEARCH, vol. 70, pp. 9-26.
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Sutherland, DL, Montemezzani, V, Howard-Williams, C, Turnbull, MH, Broady, PA & Craggs, RJ 2015, 'Modifying the high rate algal pond light environment and its effects on light absorption and photosynthesis', WATER RESEARCH, vol. 70, pp. 86-96.
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Tamburic, B, Evenhuis, CR, Suggett, DJ, Larkum, AWD, Raven, JA & Ralph, PJ 2015, 'Gas Transfer Controls Carbon Limitation During Biomass Production by Marine Microalgae', CHEMSUSCHEM, vol. 8, no. 16, pp. 2727-2736.
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Taylor, DL, Thevarajah, JJ, Narayan, DK, Murphy, P, Mangala, MM, Lim, S, Wuhrer, R, Lefay, C, O'Connor, MD, Gaborieau, M & Castignolles, P 2015, 'Real-time monitoring of peptide grafting onto chitosan films using capillary electrophoresis', ANALYTICAL AND BIOANALYTICAL CHEMISTRY, vol. 407, no. 9, pp. 2543-2555.
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Tebben, J, Motti, CA, Siboni, N, Tapiolas, DM, Negri, AP, Schupp, PJ, Kitamura, M, Hatta, M, Steinberg, PD & Harder, T 2015, 'Chemical mediation of coral larval settlement by crustose coralline algae', SCIENTIFIC REPORTS, vol. 5.
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Thode, SK, Kahlke, T, Robertsen, EM, Hansen, H & Haugen, P 2015, 'The immediate global responses of Aliivibrio salmonicida to iron limitations', BMC MICROBIOLOGY, vol. 15.
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Thompson, PA, Bonham, P, Thomson, P, Rochester, W, Doblin, MA, Waite, AM, Richardson, A & Rousseaux, CS 2015, 'Climate variability drives plankton community composition changes: the 2010-2011 El Nino to La Nina transition around Australia', JOURNAL OF PLANKTON RESEARCH, vol. 37, no. 5, pp. 966-984.
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Thomson, AC, York, PH, Smith, TM, Sherman, CD, Booth, DJ, Keough, MJ, Ross, DJ & Macreadie, PI 2015, 'Seagrass Viviparous Propagules as a Potential Long-Distance Dispersal Mechanism', Estuaries and Coasts, vol. 38, no. 3, pp. 927-940.
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Thomson, ACG, York, PH, Smith, TM, Sherman, CDH, Booth, DJ, Keough, MJ, Ross, DJ & Macreadie, PI 2015, 'Response to "Comment on 'Seagrass Viviparous Propagules as a Potential Long-Distance Dispersal Mechanism' by A. C. G. Thomson et al"', ESTUARIES AND COASTS, vol. 39, no. 3, pp. 875-876.
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Tian, C, Pei, H, Hu, W, Hao, D, Doblin, MA, Ren, Y, Wei, J & Feng, Y 2015, 'Variation of phytoplankton functional groups modulated by hydraulic controls in Hongze Lake, China', ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, vol. 22, no. 22, pp. 18163-18175.
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Tout, J, Jeffries, TC, Petrou, K, Tyson, GW, Webster, NS, Garren, M, Stocker, R, Ralph, PJ & Seymour, JR 2015, 'Chemotaxis by natural populations of coral reef bacteria', ISME JOURNAL, vol. 9, no. 8, pp. 1764-1777.
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Tout, J, Siboni, N, Messer, LF, Garren, M, Stocker, R, Webster, NS, Ralph, PJ & Seymour, JR 2015, 'Increased seawater temperature increases the abundance and alters the structure of natural Vibrio populations associated with the coral Pocillopora damicornis', Frontiers in Microbiology, vol. 6, pp. 1-12.
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Tout, J, Siboni, N, Messer, LF, Garren, M, Stocker, R, Webster, NS, Ralph, PJ & Seymour, JR 2015, 'Increased seawater temperature increases the abundance and alters the structure of natural Vibrio populations associated with the coral Pocillopora damicornis.', Frontiers in Microbiology, vol. 6, pp. 432-432.
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Trampe, E, Hansen, PJ & Kuhl, M 2015, 'A comparison of photosynthesis measurements by O-2 evolution, C-14 assimilation, and variable chlorophyll fluorescence during light acclimatization of the diatom Coscinodiscus granii', ALGAE, vol. 30, no. 2, pp. 103-119.
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Trevathan-Tackett, SM, Kelleway, J, Macreadie, PI, Beardall, J, Ralph, P & Bellgrove, A 2015, 'Comparison of marine macrophytes for their contributions to blue carbon sequestration', ECOLOGY, vol. 96, no. 11, pp. 3043-3057.
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Tschitschko, B, Williams, TJ, Allen, MA, Paez-Espino, D, Kyrpides, N, Zhong, L, Raftery, MJ & Cavicchioli, R 2015, 'Antarctic archaea-virus interactions: metaproteome-led analysis of invasion, evasion and adaptation', ISME JOURNAL, vol. 9, no. 9, pp. 2094-2107.
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Wilkinson, AD, Collier, CJ, Flores, F, Mercurio, P, O'Brien, J, Ralph, PJ & Negri, AP 2015, 'A Miniature Bioassay for Testing the Acute Phytotoxicity of Photosystem II Herbicides on Seagrass', PLOS ONE, vol. 10, no. 2.
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Woodcock, S, Manojlovic, B, Baird, ME & Ralph, PJ 2015, 'A Poisson-Pareto Model of chlorophyll-A Fluorescence Signals in Marine Environments', Australia and New Zealand Industrial and Applied Mathematics (ANZIAM) Journal, vol. 56, no. 4, pp. 373-370.
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Yao, C, Joseph, S, Li, L, Pan, G, Lin, Y, Munroe, P, Pace, B, Taherymoosavi, S, Van Zwieten, L, Thomas, T, Nielsen, S, Ye, J & Donne, S 2015, 'Developing More Effective Enhanced Biochar Fertilisers for Improvement of Pepper Yield and Quality', PEDOSPHERE, vol. 25, no. 5, pp. 703-712.
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Ye, J, Nielsen, S, Joseph, S & Thomas, T 2015, 'High-Resolution and Specific Detection of Bacteria on Complex Surfaces Using Nanoparticle Probes and Electron Microscopy', PLOS ONE, vol. 10, no. 5.
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Zavafer, A, Cheah, MH, Hillier, W, Chow, WS & Takahashi, S 2015, 'Photodamage to the oxygen evolving complex of photosystem II by visible light', SCIENTIFIC REPORTS, vol. 5.
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Zavafer, A, Chow, WS & Cheah, MH 2015, 'The action spectrum of Photosystem II photoinactivation in visible light', JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY, vol. 152, pp. 247-260.
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Zhang, D, Chanona, EAD-R, Vassiliadis, VS & Tamburic, B 2015, 'Analysis of green algal growth via dynamic model simulation and process optimization', BIOTECHNOLOGY AND BIOENGINEERING, vol. 112, no. 10, pp. 2025-2039.
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Conferences

Ajani, P, Hallegraeff, GM, Kohli, G & Murray, S 2015, 'Population structure of ecologically significant diatoms in south eastern Australia using microsatellite markers', Molecular Life of Diatoms Conference, Washington, USA.

Craggs, RJ, Park, J, Sutherland, DL & Heubeck, S 2015, 'Enhancements of wastewater treatment High Rate Algal Ponds', Japanese Algae Workshop, Hamilton, New Zealand.

Craggs, RJ, Park, J, Sutherland, DL & Heubeck, S 2015, 'Hectare-scale wastewater treatment and resource recovery high rate algal ponds', Green and Life Innovations by Algae Biomass Symposium, Japan.

Craggs, RJ, Park, J, Sutherland, DL & Heubeck, S 2015, 'Initial performance of the Cambridge enhanced pond system', Waipa District Council Wastewater Project Advisory Group Meeting 20th April, Cambridge, Cambridge, NZ.

Frommlet, JC, Sousa, L, Alves, A, Vieira, SI, Suggett, DJ & Serodio, J 2015, 'SYMBIODINIUM - THE FIRST DINOFLAGELLATE KNOWN TO DRIVE MICROBIAL-ALGAL CALCIFICATION', EUROPEAN JOURNAL OF PHYCOLOGY, TAYLOR & FRANCIS LTD, pp. 56-57.

Huete, A, Xie, Z, Restrepo-Coupe, N, Devadas, R, Davies, K & Waston, C 2015, 'Terrestrial Total Water Storage Dynamics Of Australia's Recent Dry And Wet Events', Proceedings of the 2015 IEEE International Geoscience and Remote Sensing Symposium (IGARSS), 2015 IEEE International Geoscience and Remote Sensing Symposium (IGARSS), IEEE, Milan, pp. 992-995.
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Osman, E, Pettay, T, Suggett, DJ, RVoolstra, C, Warner, ME & Smith, D 2015, 'PHYSIOLOGICAL RESPONSE OF SYMBIODINIUM POPULATIONS ADAPTED TO DIFFERENT THERMAL REGIMES IN THE RED SEA', EUROPEAN JOURNAL OF PHYCOLOGY, TAYLOR & FRANCIS LTD, pp. 60-60.

Oxborough, K, Moore, M, Suggett, DJ & Geider, R 2015, 'USING FAST REPETITION RATE FLUOROMETRY TO ESTIMATE PSII ELECTRON FLUX PER UNIT VOLUME: A PURELY OPTICAL METHOD FOR ESTIMATING GPP BY PHYTOPLANKTON?', EUROPEAN JOURNAL OF PHYCOLOGY, TAYLOR & FRANCIS LTD, pp. 34-34.

Tanner, C, Sukias, J, de Winton, M, Larned, S, Sutherland, DL & Hughs, AA 1970, 'Te Waihora wetland assessment', Whakaora Te Waihora and Te Waihora Zone Committee.

Warner, ME & Suggett, DJ 2015, 'ESTABLISHING A FUNCTIONAL BASIS TO UNRAVEL SYMBIODINIUM DIVERSITY', EUROPEAN JOURNAL OF PHYCOLOGY, TAYLOR & FRANCIS LTD, pp. 152-153.

Reports

Pernice, M, Schliep, M, Szabo, M, Rasheed, M, Bryant, C, York, P, Chartrand, K & Petrou, K 2015, Development of a molecular biology tool kit to monitor dredging-related light stress in the seagrass Zostera muelleri ssp. capricorniin Port Curtis - final report, no. 15/08, Cairns.
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Roberts, C, Nicastro, A, Pernice, M & Blount, C 2015, Coral Monitoring Post-Dredging Report − Ichthys Nearshore Environmental Monitoring Program, pp. 1-249, Sydney.
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Ruvindy, R, Ajani, P & Murray, S 2015, Microalgal Community Composition Assessment in Warringah Lagoons 2014-2015.

Sigel, B, Plew, D, Hamilton, D, Sutherland, D & Howard-Williams, C 2015, Updated model assessment of the effects of increased nutrient loads into Lake Benmore, Christchurch.

Sutherland, D 2015, Ecological impact of the salmon farms in the Upper Waitaki hydro-canals, Christchurch.

Sutherland, D & Burton, T 2015, Assessment of the ecological condition of six Canterbury lakes using LakeSPI and weed surveillance in sixteen lakes, Christchurch.

Sutherland, D, Inder, F, Molineux, M & Wells, R 2015, Monitoring the potential effects of MTAD on the Waiau Arm water quality and macrophytes: year three, Christchurch.

Sutherland, DL 2015, Assessment of Ulva / Graciliaria growth dynamics in the Avon-Heathcote Estuary, Christchurch, NZ.

Sutherland, DL 2015, Water quality in the Wainono Lagoon and potential impacts of proposed flow augmentation on water clarity. Evidence prepared for the Proposed Plan Change 3 (SCCS Area) to the Operative Canterbury Land and Water Regional Plan, Christchurch, NZ.

Sutherland, DL & Craggs, RJ 2015, Alofi wastewater management project. Project design document., Christchurch, NZ.

Other

Baker, KG, Doblin, MA & Robinson, C 2015, 'THERMAL PERFORMANCE CURVES REVEAL ALTERNATIVE ENERGY PATHWAYS AT STRESSFUL TEMPERATURES: A MULTI-TRAIT ANALYSIS OF PHENOTYPIC PLASTICITY IN THALASSIOSIRA PSEUDONANA'.

Hughes, DJ, Doblin, MA, Ralph, PJ, van Dongen-Vogels, V, Ingleton, T & Suggett, DJ 2015, 'NITROGEN AVAILABILITY DRIVES VARIABILITY OF THE ELECTRON REQUIREMENT FOR CARBON FIXATION IN COASTAL PHYTOPLANKTON COMMUNITIES'.