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Publications

Chapters

Ajani, PA, Eriksen, R & Rissik, D 2019, 'Coastal and marine phytoplankton: diversity and ecology' in Suthers, I & Rissik, D (eds), Plankton, A Guide to Their Ecology and Monitoring for Water Quality, 2nd Edition, CSIRO Publishing.

Murray, SA & Hallegraeff, G 2019, 'Harmful Algae Introductions: Vectors of Transfer, Mitigation, and Management' in Shumway, S, Burkholder, JA & Morton, S (eds), Harmful Algal Blooms A Compendium Desk Reference, John Wiley & Sons, pp. 493-506.
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Rissik, D, Ajani, P, Bowling, L, gibbs, M, Kobayashi, T, Pitt, K, Richardson, A & Suthers, I 2019, 'Use of Plankton for Management' in Plankton A Guide to Their Ecology and Monitoring for Water Quality, CSIRO PUBLISHING.
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Rissik, D, van Senden, D, Doherty, M, Ingleton, I, Ajani, P, Bowling, L, Gibbs, M, Gladstone, M, Kobayashi, T, Suthers, I & Froneman, W 2019, 'Plankton-related water quality issues' in Suthers, I, Richardson, A & Rissik, D (eds), Plankton, A Guide to Their Ecology and Monitoring for Water Quality, 2nd Edition, CSIRO Publishing.

Wilkinson, S, Ralph, P & Biloria, NM 2019, 'Algae Building: Is This the New Smart Sustainable Technology' in Biloria, N (ed), Data-Driven Multivalence in the Built Environment, Springer Nature, Switzerland, pp. 245-268.
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Journal articles

Aguilar, C, Raina, JB, Fôret, S, Hayward, DC, Lapeyre, B, Bourne, DG & Miller, DJ 2019, 'Transcriptomic analysis reveals protein homeostasis breakdown in the coral Acropora millepora during hypo-saline stress', BMC Genomics, vol. 20, no. 1.
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Akyol, S, Ben Nissan, B, Karacan, I, Yetmez, M, Gokce, H, Suggett, DJ & Oktar, FN 2019, 'Morphology, characterization, and conversion of the corals Goniopora spp. and Porites cylindrica to hydroxyapatite', Journal of the Australian Ceramic Society, vol. 55, no. 3, pp. 893-901.
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Albert, LP, Restrepo-Coupe, N, Smith, MN, Wu, J, Chavana-Bryant, C, Prohaska, N, Taylor, TC, Martins, GA, Ciais, P, Mao, J, Arain, MA, Li, W, Shi, X, Ricciuto, DM, Huxman, TE, McMahon, SM & Saleska, SR 2019, 'Cryptic phenology in plants: Case studies, implications, and recommendations', GLOBAL CHANGE BIOLOGY, vol. 25, no. 11, pp. 3591-3608.
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Andersson, AJ, Venn, AA, Pendleton, L, Brathwaite, A, Camp, EF, Cooley, S, Gledhill, D, Koch, M, Maliki, S & Manfrino, C 2019, 'Ecological and socioeconomic strategies to sustain Caribbean coral reefs in a high-CO2 world', Regional Studies in Marine Science, vol. 29.
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Armbrecht, LH, Coolen, MJL, Lejzerowicz, F, George, SC, Negandhi, K, Suzuki, Y, Young, J, Foster, NR, Armand, LK, Cooper, A, Ostrowski, M, Focardi, A, Stat, M, Moreau, JW & Weyrich, LS 2019, 'Ancient DNA from marine sediments: Precautions and considerations for seafloor coring, sample handling and data generation', Earth-Science Reviews, vol. 196.
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Bai, J, Shi, H, Yu, Q, Xie, Z, Li, L, Luo, G, Jin, N & Li, J 2019, 'Satellite-observed vegetation stability in response to changes in climate and total water storage in Central Asia.', The Science of the total environment, vol. 659, pp. 862-871.
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Barraza, V, Alfredo Huete, Dara Entekhabi, Esteban Roitberg, Francisco Grings, María Gassmann, Mariano Franco, Natalia Restrepo-Coupe & Vanesa Douna 2019, 'Estimation of latent heat flux using satellite land surface temperature and a variational data assimilation scheme over a eucalypt forest savanna in Northern Australia', Agricultural and forest meteorology., vol. 268, pp. 341-353.
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Barros, FDV, Bittencourt, PRL, Brum, M, Restrepo-Coupe, N, Pereira, L, Teodoro, GS, Saleska, SR, Borma, LS, Christoffersen, BO, Penha, D, Alves, LF, Lima, AJN, Carneiro, VMC, Gentine, P, Lee, J-E, Aragão, LEOC, Ivanov, V, Leal, LSM, Araujo, AC & Oliveira, RS 2019, 'Hydraulic traits explain differential responses of Amazonian forests to the 2015 El Niño-induced drought.', The New phytologist, vol. 223, no. 3, pp. 1253-1266.
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Bates, H, Zavafer, A, Szabó, M & Ralph, PJ 2019, 'A guide to Open-JIP, a low-cost open-source chlorophyll fluorometer', Photosynthesis Research.
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Behrendt, L, Trampe, EL, Nord, NB, Nguyen, J, Kuhl, M, Lonco, D, Nyarko, A, Dhinojwala, A, Hershey, OS & Barton, H 2019, 'Life in the dark: far-red absorbing cyanobacteria extend photic zones deep into terrestrial caves', ENVIRONMENTAL MICROBIOLOGY.
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Bodachivskyi, I, Kuzhiumparambil, U & Bradley G Williams, D 2019, 'High Yielding Acid-Catalysed Hydrolysis of Cellulosic Polysaccharides and Native Biomass into Low Molecular Weight Sugars in Mixed Ionic Liquid Systems.', ChemistryOpen, vol. 8, no. 10, pp. 1316-1324.
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Bodachivskyi, I, Kuzhiumparambil, U & Williams, DBG 2019, 'A Systematic Study of Metal Triflates in Catalytic Transformations of Glucose in Water and Methanol: Identifying the Interplay of Bronsted and Lewis Acidity', CHEMSUSCHEM, vol. 12, no. 14, pp. 3263-3270.
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Bodachivskyi, I, Kuzhiumparambil, U & Williams, DBG 2019, 'A Systematic Study of Metal Triflates in Catalytic Transformations of Glucose in Water and Methanol: Identifying the Interplay of Brønsted and Lewis Acidity', ChemSusChem, vol. 12, pp. 3208-3208.
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Bodachivskyi, I, Kuzhiumparambil, U & Williams, DBG 2019, 'Acid-Catalysed Conversion of Carbohydrates into Furan-Type Molecules in Zinc Chloride Hydrate', ChemPlusChem, vol. 84, no. 4, pp. 352-357.
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Bodachivskyi, I, Kuzhiumparambil, U & Williams, DBG 2019, 'Metal triflates are tunable acidic catalysts for high yielding conversion of cellulosic biomass into ethyl levulinate', Fuel Processing Technology, vol. 195.
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Bodachivskyi, I, Kuzhiumparambil, U & Williams, DBG 2019, 'The role of the molecular formula of ZnCl2·: N H2O on its catalyst activity: A systematic study of zinc chloride hydrates in the catalytic valorisation of cellulosic biomass', Catalysis Science and Technology, vol. 9, no. 17, pp. 4693-4701.
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Bramucci, AR & Case, RJ 2019, 'Phaeobacter inhibens induces apoptosis-like programmed cell death in calcifying Emiliania huxleyi.', Scientific reports, vol. 9, no. 1.
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Bretherton, L, Poulton, AJ, Lawson, T, Rukminasari, N, Balestreri, C, Schroeder, D, Mark Moore, C & Suggett, DJ 2019, 'Day length as a key factor moderating the response of coccolithophore growth to elevated pCO 2', Limnology and Oceanography, vol. 64, no. 3, pp. 1284-1296.
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Brodersen, KE, Koren, K, Revsbech, NP & Kuehl, M 2019, 'Strong leaf surface basification and CO2 limitation of seagrass induced by epiphytic biofilm microenvironments', PLANT CELL AND ENVIRONMENT.
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Brown, P, RELISH Consortium & Zhou, Y 2019, 'Large expert-curated database for benchmarking document similarity in biomedical literature search', Database: the journal of biological databases and curation.
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Buapet, P, Mohammadi, NS, Pernice, M, Kumar, M, Kuzhiumparambil, U & Ralph, PJ 2019, 'Excess copper promotes photoinhibition and modulates the expression of antioxidant-related genes in Zostera muelleri', AQUATIC TOXICOLOGY, vol. 207, pp. 91-100.
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Camp, EF, Edmondson, J, Doheny, A, Rumney, J, Grima, AJ, Huete, A & Suggett, DJ 2019, 'Mangrove lagoons of the Great Barrier Reef support coral populations persisting under extreme environmental conditions', Marine Ecology Progress Series, vol. 625, pp. 1-14.
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Canonico, G, Buttigieg, PL, Montes, E, Muller-Karger, FE, Stepien, C, Wright, D, Benson, A, Helmuth, B, Costello, M, Sousa-Pinto, I, Saeedi, H, Newton, J, Appeltans, W, Bednaršek, N, Bodrossy, L, Best, BD, Brandt, A, Goodwin, KD, Iken, K, Marques, AC, Miloslavich, P, Ostrowski, M, Turner, W, Achterberg, EP, Barry, T, Defeo, O, Bigatti, G, Henry, LA, Ramiro-Sánchez, B, Durán, P, Morato, T, Murray Roberts, J, García-Alegre, A, Cuadrado, MS & Murton, B 2019, 'Global observational needs and resources for marine biodiversity', Frontiers in Marine Science, vol. 6, no. JUL.
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Cardona, T, Sánchez-Baracaldo, P, Rutherford, AW & Larkum, AW 2019, 'Early Archean origin of Photosystem II.', Geobiology, vol. 17, no. 2, pp. 127-150.
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Carney, RL, Labbate, M, Siboni, N, Tagg, KA, Mitrovic, SM & Seymour, JR 2019, 'Urban beaches are environmental hotspots for antibiotic resistance following rainfall.', Water research, vol. 167.
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Chen, L, Xiang, W, Wu, H, Ouyang, S, Lei, P, Hu, Y, Ge, T, Ye, J & Kuzyakov, Y 2019, 'Contrasting patterns and drivers of soil fungal communities in subtropical deciduous and evergreen broadleaved forests.', Applied microbiology and biotechnology, vol. 103, no. 13, pp. 5421-5433.
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Clifton, J, Osman, EO, Suggett, DJ & Smith, DJ 2019, 'Resolving conservation and development tensions in a small island state: A governance analysis of Curieuse Marine National Park, Seychelles', Marine Policy.
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Coleman, MA, Clark, JS, Doblin, MA, Bishop, MJ & Kelaher, BP 2019, 'Genetic differentiation between estuarine and open coast ecotypes of a dominant ecosystem engineer', Marine and Freshwater Research.
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Collins, S, Boyd, PW & Doblin, MA 2019, 'Evolution, Microbes, and Changing Ocean Conditions.', Annual review of marine science.
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Commault, AS, Fabris, M, Kuzhiumparambil, U, Adriaans, J, Pernice, M & Ralph, PJ 2019, 'Methyl jasmonate treatment affects the regulation of the 2-C-methyl-D-erythritol 4-phosphate pathway and early steps of the triterpenoid biosynthesis in Chlamydomonas reinhardtii', Algal Research, vol. 39.
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Curson, ARJ, Williams, BT, Pinchbeck, BJ, Sims, LP, Martínez, AB, Rivera, PPL, Kumaresan, D, Mercadé, E, Spurgin, LG, Carrión, O, Moxon, S, Cattolico, RA, Kuzhiumparambil, U, Guagliardo, P, Clode, PL, Raina, J-B & Todd, JD 2019, 'Author Correction: DSYB catalyses the key step of dimethylsulfoniopropionate biosynthesis in many phytoplankton.', Nature microbiology, vol. 4, no. 3, pp. 540-542.
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De Lima Ribeiro, A, Artlett, C, Ajani, P, Derkenne, C & Pask, H 2019, 'Impact of fluorescence on Raman remote sensing of temperature in natural water samples', Optics Express, vol. 27, no. 16, pp. 22339-22351.
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Duke, NC, Field, C, Mackenzie, JR, Meynecke, JO & Wood, AL 2019, 'Rainfall and its possible hysteresis effect on the proportional cover of tropical tidal-wetland mangroves and saltmarsh-saltpans', Marine and Freshwater Research, vol. 70, no. 8, pp. 1047-1055.
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Espinoza-Vergara, G, Noorian, P, Silva-Valenzuela, CA, Raymond, BBA, Allen, C, Hoque, MM, Sun, S, Johnson, MS, Pernice, M, Kjelleberg, S, Djordjevic, SP, Labbate, M, Camilli, A & McDougald, D 2019, 'Vibrio cholerae residing in food vacuoles expelled by protozoa are more infectious in vivo', Nature Microbiology.
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Filippini, G, Bugnot, AB, Johnston, EL, Ruszczyk, J, Potts, J, Scanes, P, Ferguson, A, Ostrowski, M, Varkey, D & Dafforn, KA 2019, 'Sediment bacterial communities associated with environmental factors in Intermittently Closed and Open Lakes and Lagoons (ICOLLs).', The Science of the total environment, vol. 693.
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Fisher, A, Wangpraseurt, D, Larkum, AWD, Johnson, M, Kühl, M, Chen, M, Wong, HL & Burns, BP 2019, 'Correlation of bio-optical properties with photosynthetic pigment and microorganism distribution in microbial mats from Hamelin Pool, Australia.', FEMS microbiology ecology, vol. 95, no. 1.
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Gardner, SG, Camp, EF, Smith, DJ, Kahlke, T, Osman, EO, Gendron, G, Hume, BCC, Pogoreutz, C, Voolstra, CR & Suggett, DJ 2019, 'Coral microbiome diversity reflects mass coral bleaching susceptibility during the 2016 El Niño heat wave.', Ecology and Evolution, vol. 9, no. 3, pp. 938-956.
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Gleason, FH, Larkum, AWD, Raven, JA, Manohar, CS & Lilje, O 2019, 'Ecological implications of recently discovered and poorly studied sources of energy for the growth of true fungi especially in extreme environments', Fungal Ecology, vol. 39, pp. 380-387.
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Goessling, JW, Su, Y, Maibohm, C, Ellegaard, M & Kuhl, M 2019, 'Differences in the optical properties of valve and girdle band in a centric diatom', INTERFACE FOCUS, vol. 9, no. 1.
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Gómez-Consarnau, L, Raven, JA, Levine, NM, Cutter, LS, Wang, D, Seegers, B, Arístegui, J, Fuhrman, JA, Gasol, JM & Sañudo-Wilhelmy, SA 2019, 'Microbial rhodopsins are major contributors to the solar energy captured in the sea.', Science advances, vol. 5, no. 8.
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Goyen, S, Camp, EF, Fujise, L, Lloyd, A, Nitschke, MR, LaJeunensse, T, Kahlke, T, Ralph, PJ & Suggett, D 2019, 'Mass coral bleaching of P. versipora in Sydney Harbour driven by the 2015–2016 heatwave', Coral Reefs, vol. 38, no. 4, pp. 815-830.
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Goyen, S, Camp, EF, Fujise, L, Lloyd, A, Nitschke, MR, LaJeunesse, TC, Kahlke, T, Ralph, PJ & Suggett, D 2019, 'Mass coral bleaching of P. versipora in Sydney Harbour driven by the 2015-2016 heatwave (vol 38, pg 815, 2019)', CORAL REEFS, vol. 38, no. 4, pp. 877-877.
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Gray, R, Jones, HA, Hitchcock, JN, Hardwick, L, Pepper, D, Lugg, A, Seymour, JR & Mitrovic, SM 2019, 'Mitigation of cold-water thermal pollution downstream of a large dam with the use of a novel thermal curtain', River Research and Applications, vol. 35, pp. 855-866.
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Green, TJ, Siboni, N, King, WL, Labbate, M, Seymour, JR & Raftos, D 2019, 'Simulated Marine Heat Wave Alters Abundance and Structure of Vibrio Populations Associated with the Pacific Oyster Resulting in a Mass Mortality Event.', Microbial ecology, vol. 77, no. 3, pp. 736-747.
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Haro, S, Brodersen, KE, Bohórquez, J, Papaspyrou, S, Corzo, A & Kühl, M 2019, 'Radiative Energy Budgets in a Microbial Mat Under Different Irradiance and Tidal Conditions.', Microbial ecology, vol. 77, no. 4, pp. 852-865.
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Hewson, I, Sullivan, B, Jackson, EW, Xu, Q, Long, H, Lin, C, Carde, EMQ, Seymour, J, Siboni, N, Jones, MRL & Sewell, MA 2019, 'Perspective: Something Old, Something New? Review of Wasting and Other Mortality in Asteroidea (Echinodermata)', FRONTIERS IN MARINE SCIENCE, vol. 6.
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Hoppenrath, M, Kretzschmar, AL, Kaufmann, MJ & Murray, SA 2019, 'Morphological and molecular phylogenetic identification and record verification of Gambierdiscus excentricus (Dinophyceae) from Madeira Island (NE Atlantic Ocean)', Marine Biodiversity Records, vol. 12, no. 1.
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Hughes, DJ, Crosswell, JR, Doblin, MA, Oxborough, K, Ralph, PJ, Varkey, D & Suggett, DJ 2019, 'Dynamic variability of the phytoplankton electron requirement for carbon fixation in eastern Australian waters', Journal of Marine Systems, pp. 103252-103252.
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Hurtado-McCormick, V, Kahlke, T, Petrou, K, Jeffries, T, Ralph, PJ & Seymour, JR 2019, 'Regional and Microenvironmental Scale Characterization of the Zostera muelleri Seagrass Microbiome.', Frontiers in Microbiology, vol. 10.
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Jacques, SL, Wangpraseurt, D & Kühl, M 2019, 'Optical properties of living corals determined with diffuse reflectance spectroscopy', Frontiers in Marine Science, vol. 6, no. JUL.
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Jaramillo-Madrid, AC, Ashworth, J, Fabris, M & Ralph, PJ 2019, 'Phytosterol biosynthesis and production by diatoms (Bacillariophyceae).', Phytochemistry, vol. 163, pp. 46-57.
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Kahlke, T & Ralph, PJ 2019, 'BASTA – Taxonomic classification of sequences and sequence bins using last common ancestor estimations', Methods in Ecology and Evolution, vol. 10, no. 1, pp. 100-103.
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Kim, JH, Kim, H, Kang, D, Lim, YK, Ajani, P, Jung, SW & Baek, SH 2019, 'Field application and validity of a red-tide acoustic sensing system (RASS) for monitoring and alerting of harmful algal blooms (HABs) in Korean coastal waters', Journal of Applied Phycology.
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Kim, M, Pernice, M, Watson-Lazowski, A, Guagliardo, P, Kilburn, MR, Larkum, AWD, Raven, JA & Ralph, PJ 2019, 'Effect of reduced irradiance on 13C uptake, gene expression and protein activity of the seagrass Zostera muelleri.', Marine environmental research, vol. 149, pp. 80-89.
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King, WL, Jenkins, C, Go, J, Siboni, N, Seymour, JR & Labbate, M 2019, 'Characterisation of the Pacific Oyster Microbiome During a Summer Mortality Event.', Microbial Ecology, vol. 77, pp. 502-512.
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King, WL, Jenkins, C, Seymour, JR & Labbate, M 2019, 'Oyster disease in a changing environment: Decrypting the link between pathogen, microbiome and environment.', Marine environmental research, vol. 143, pp. 124-140.
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King, WL, Siboni, N, Williams, NLR, Kahlke, T, Nguyen, KV, Jenkins, C, Dove, M, O'Connor, W, Seymour, JR & Labbate, M 2019, 'Variability in the Composition of Pacific Oyster Microbiomes Across Oyster Families Exhibiting Different Levels of Susceptibility to OsHV-1 μvar Disease.', Frontiers in microbiology, vol. 10, no. Mar.
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Koren, K, Moßhammer, M, Scholz, VV, Borisov, SM, Holst, G & Kühl, M 2019, 'Luminescence Lifetime Imaging of Chemical Sensors-A Comparison between Time-Domain and Frequency-Domain Based Camera Systems.', Analytical chemistry, vol. 91, no. 5, pp. 3233-3238.
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Kretzschmar, AL, Larsson, ME, Hoppenrath, M, Doblin, MA & Murray, SA 2019, 'Characterisation of Two Toxic Gambierdiscus spp. (Gonyaulacales, Dinophyceae) from the Great Barrier Reef (Australia): G. lewisii sp. nov. and G. holmesii sp. nov', Protist, pp. 125699-125699.
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Kretzschmar, AL, Verma, A, Murray, S, Kahlke, T, Fourment, M & Darling, A 2019, 'Trial by phylogenetics - Evaluating the Multi-Species Coalescent for phylogenetic inference on taxa with high levels of paralogy (Gonyaulacales, Dinophyceae)'.
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Larsson, ME, Harwood, TD, Lewis, RJ, Himaya, SWA & Doblin, MA 2019, 'Toxicological characterization of Fukuyoa paulensis (Dinophyceae) from temperate Australia', Phycological Research, vol. 67, no. 1, pp. 65-71.
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Larsson, ME, Smith, KF & Doblin, MA 2019, 'First description of the environmental niche of the epibenthic dinoflagellate species Coolia palmyrensis, C. malayensis, and C. tropicalis (Dinophyceae) from Eastern Australia.', Journal of phycology, vol. 55, no. 3, pp. 565-577.
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Leggat, WP, Camp, EF, Suggett, DJ, Heron, SF, Fordyce, AJ, Gardner, S, Deakin, L, Turner, M, Beeching, LJ, Kuzhiumparambil, U, Eakin, CM & Ainsworth, TD 2019, 'Rapid Coral Decay Is Associated with Marine Heatwave Mortality Events on Reefs.', Current biology : CB, vol. 29, no. 16, pp. 2723-2730.
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Leles, SG, Mitra, A, Flynn, KJ, Tillmann, U, Stoecker, D, Jeong, HJ, Burkholder, JA, Hansen, PJ, Caron, DA, Glibert, PM, Hallegraeff, G, Raven, JA, Sanders, RW & Zubkov, M 2019, 'Sampling bias misrepresents the biogeographical significance of constitutive mixotrophs across global oceans', Global Ecology and Biogeography, vol. 28, no. 4, pp. 418-428.
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Liao, J, Ye, J, Liang, Y, Khalid, M & Huang, D 2019, 'Pakchoi antioxidant improvement and differential rhizobacterial community composition under organic fertilization', Sustainability (Switzerland), vol. 11, no. 8.
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Liu, Y, Ge, T, Ye, J, Liu, S, Shibistova, O, Wang, P, Wang, J, Li, Y, Guggenberger, G, Kuzyakov, Y & Wu, J 2019, 'Initial utilization of rhizodeposits with rice growth in paddy soils: Rhizosphere and N fertilization effects', Geoderma, vol. 338, pp. 30-39.
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Lohr, KE, Camp, EF, Kuzhiumparambil, U, Lutz, A, Leggat, W, Patterson, JT & Suggett, DJ 2019, 'Resolving coral photoacclimation dynamics through coupled photophysiological and metabolomic profiling.', The Journal of experimental biology, vol. 222, no. Pt 8.
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Lohr, KE, Khattri, RB, Guingab-Cagmat, J, Camp, EF, Merritt, ME, Garrett, TJ & Patterson, JT 2019, 'Metabolomic profiles differ among unique genotypes of a threatened Caribbean coral.', Scientific reports, vol. 9, no. 1.
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Macreadie, PI, Anton, A, Raven, JA, Beaumont, N, Connolly, RM, Friess, DA, Kelleway, JJ, Kennedy, H, Kuwae, T, Lavery, PS, Lovelock, CE, Smale, DA, Apostolaki, ET, Atwood, TB, Baldock, J, Bianchi, TS, Chmura, GL, Eyre, BD, Fourqurean, JW, Hall-Spencer, JM, Huxham, M, Hendriks, IE, Krause-Jensen, D, Laffoley, D, Luisetti, T, Marbà, N, Masque, P, McGlathery, KJ, Megonigal, JP, Murdiyarso, D, Russell, BD, Santos, R, Serrano, O, Silliman, BR, Watanabe, K & Duarte, CM 2019, 'The future of Blue Carbon science.', Nature communications, vol. 10, no. 1.
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Macreadie, PI, Atwood, TB, Seymour, JR, Fontes, MLS, Sanderman, J, Nielsen, DA & Connolly, RM 2019, 'Vulnerability of seagrass blue carbon to microbial attack following exposure to warming and oxygen.', Science of the Total Environment, vol. 686, pp. 264-275.
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McInnes, AS, Laczka, OF, Baker, KG, Larsson, ME, Robinson, CM, Clark, JS, Laiolo, L, Alvarez, M, Laverock, B, Kremer, CT, van Sebille, E & Doblin, MA 2019, 'Live cell analysis at sea reveals divergent thermal performance between photosynthetic ocean microbial eukaryote populations.', The ISME journal, vol. 13, no. 5, pp. 1374-1378.
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Meunier, V, Bonnet, S, Pernice, M, Benavides, M, Lorrain, A, Grosso, O, Lambert, C & Houlbreque, F 2019, 'Bleaching forces coral's heterotrophy on diazotrophs and Synechococcus', ISME JOURNAL, vol. 13, no. 11, pp. 2882-2886.
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Moore, LR, Huang, T, Ostrowski, M, Mazard, S, Kumar, SS, Gamage, HKAH, Brown, MV, Messer, LF, Seymour, JR & Paulsen, IT 2019, 'Unicellular Cyanobacteria Are Important Components of Phytoplankton Communities in Australia's Northern Oceanic Ecoregions.', Frontiers in microbiology, vol. 9, no. Jan.
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Moßhammer, M, Brodersen, KE, Kühl, M & Koren, K 2019, 'Nanoparticle- and microparticle-based luminescence imaging of chemical species and temperature in aquatic systems: a review.', Mikrochimica acta, vol. 186, no. 2.
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Murray, SA, Ruvindy, R, Kohli, GS, Anderson, DM & Brosnahan, ML 2019, 'Evaluation of sxtA and rDNA qPCR assays through monitoring of an inshore bloom of Alexandrium catenella Group 1.', Scientific reports, vol. 9, no. 1.
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Nguyen, LN, Johir, MAH, Commault, A, Bustamante, H, Aurisch, R, Lowrie, R & Nghiem, LD 2019, 'Impacts of mixing on foaming, methane production, stratification and microbial community in full-scale anaerobic co-digestion process.', Bioresource technology, vol. 281, pp. 226-233.
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Nguyen, LN, Labeeuw, L, Commault, AS, Emmerton, B, Ralph, PJ, Johir, MAH, Guo, W, Ngo, HH & Nghiem, LD 2019, 'Validation of a cationic polyacrylamide flocculant for the harvesting fresh and seawater microalgal biomass', Environmental Technology and Innovation, vol. 16.
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Ordoñez, A, Wangpraseurt, D, Lyndby, NH, Kühl, M & Diaz-Pulido, G 2019, 'Elevated CO2 leads to enhanced photosynthesis but decreased growth in early life stages of reef building coralline algae', Frontiers in Marine Science, vol. 5, no. JAN.
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Pernice, M & Hughes, DJ 2019, 'Forecasting global coral bleaching', Nature Climate Change, vol. 9, no. 11, pp. 803-804.
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Pernice, M, Raina, J-B, Rädecker, N, Cárdenas, A, Pogoreutz, C & Voolstra, CR 2019, 'Down to the bone: the role of overlooked endolithic microbiomes in reef coral health.', The ISME journal.
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Pollier, J, Vancaester, E, Kuzhiumparambil, U, Vickers, CE, Vandepoele, K, Goossens, A & Fabris, M 2019, 'A widespread alternative squalene epoxidase participates in eukaryote steroid biosynthesis.', Nature Microbiology, vol. 4, pp. 226-233.
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Raina, J-B, Fernandez, V, Lambert, B, Stocker, R & Seymour, JR 2019, 'The role of microbial motility and chemotaxis in symbiosis.', Nature reviews. Microbiology, vol. 17, no. 5, pp. 284-294.
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Raven, JA, Gobler, CS & Hansen, PJ 2019, 'Dynamic CO 2 and pH levels in coastal, estuarine, and inland waters: Theoretical and observed effects on harmful algal blooms', Harmful Algae.
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Rinke, C, Rubino, F, Messer, LF, Youssef, N, Parks, DH, Chuvochina, M, Brown, M, Jeffries, T, Tyson, GW, Seymour, JR & Hugenholtz, P 2019, 'A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.).', The ISME Journal, vol. 13, no. 3, pp. 663-675.
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Segečová, A, Pérez-Bueno, ML, Barón, M, Červený, J & Roitsch, TG 2019, 'Noninvasive determination of toxic stress biomarkers by high-throughput screening of photoautotrophic cell suspension cultures with multicolor fluorescence imaging.', Plant methods, vol. 15, no. 1.
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Seguro, I, Marca, AD, Painting, SJ, Shutler, JD, Suggett, DJ & Kaiser, J 2019, 'High-resolution net and gross biological production during a Celtic Sea spring bloom', Progress in Oceanography, vol. 177.
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Serrano, O, Lovelock, CE, B Atwood, T, Macreadie, PI, Canto, R, Phinn, S, Arias-Ortiz, A, Bai, L, Baldock, J, Bedulli, C, Carnell, P, Connolly, RM, Donaldson, P, Esteban, A, Ewers Lewis, CJ, Eyre, BD, Hayes, MA, Horwitz, P, Hutley, LB, Kavazos, CRJ, Kelleway, JJ, Kendrick, GA, Kilminster, K, Lafratta, A, Lee, S, Lavery, PS, Maher, DT, Marbà, N, Masque, P, Mateo, MA, Mount, R, Ralph, PJ, Roelfsema, C, Rozaimi, M, Ruhon, R, Salinas, C, Samper-Villarreal, J, Sanderman, J, J Sanders, C, Santos, I, Sharples, C, Steven, ADL, Cannard, T, Trevathan-Tackett, SM & Duarte, CM 2019, 'Australian vegetated coastal ecosystems as global hotspots for climate change mitigation.', Nature communications, vol. 10, no. 1.
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Shah Mohammadi, N, Buapet, P, Pernice, M, Signal, B, Kahlke, T, Hardke, L & Ralph, PJ 2019, 'Transcriptome profiling analysis of the seagrass, Zostera muelleri under copper stress.', Marine pollution bulletin, vol. 149.
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Simoniello, C, Jencks, J, Lauro, FM, Loftis, JD, Weslawski, JM, Deja, K, Forrest, DR, Gossett, S, Jeffries, TC, Jensen, RM, Kobara, S, Nolan, L, Ostrowski, M, Pounds, D, Roseman, G, Basco, O, Gosselin, S, Reed, A, Wills, P & Wyatt, D 2019, 'Citizen-science for the future: Advisory case studies from around the globe', Frontiers in Marine Science, vol. 6, no. May.
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Simoniello, C, Jencks, J, Lauro, FM, Loftis, JD, Weslawski, JM, Deja, K, Forrest, DR, Gossetts, S, Jeffries, TC, Jensen, RM, Kobara, S, Nolan, L, Ostrowski, M, Pounds, D, Roseman, G, Basco, O, Gosselin, S, Reed, A, Wills, P & Wyatt, D 2019, 'Citizen-Science for the Future: Advisory Case Studies From Around the Globe', Frontiers in Marine Science, vol. 6.
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Smith, MN, Stark, SC, Taylor, TC, Ferreira, ML, de Oliveira, E, Restrepo-Coupe, N, Chen, S, Woodcock, T, Dos Santos, DB, Alves, LF, Figueira, M, de Camargo, PB, de Oliveira, RC, Aragão, LEOC, Falk, DA, McMahon, SM, Huxman, TE & Saleska, SR 2019, 'Seasonal and drought-related changes in leaf area profiles depend on height and light environment in an Amazon forest.', The New phytologist, vol. 222, no. 3, pp. 1284-1297.
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Spicer, GLC, Eid, A, Wangpraseurt, D, Swain, TD, Winkelmann, JA, Yi, J, Kühl, M, Marcelino, LA & Backman, V 2019, 'Measuring light scattering and absorption in corals with Inverse Spectroscopic Optical Coherence Tomography (ISOCT): a new tool for non-invasive monitoring.', Scientific reports, vol. 9, no. 1.
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Sproles, AE, Oakley, CA, Matthews, JL, Peng, L, Owen, JG, Grossman, AR, Weis, VM & Davy, SK 2019, 'Proteomics quantifies protein expression changes in a model cnidarian colonised by a thermally tolerant but suboptimal symbiont.', The ISME Journal, vol. 13, no. 9, pp. 2334-2345.
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Suggett, DJ & Smith, DJ 2019, 'Coral bleaching patterns are the outcome of complex biological and environmental networking.', Global change biology.
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Suggett, DJ, Camp, EF, Edmondson, J, Boström-Einarsson, L, Ramler, V, Lohr, K & Patterson, JT 2019, 'Optimizing return-on-effort for coral nursery and outplanting practices to aid restoration of the Great Barrier Reef', Restoration Ecology, vol. 27, no. 3, pp. 683-693.
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Sukačová, K, Búzová, D, Trávníček, P, Červený, J, Vítězová, M & Vítěz, T 2019, 'Optimization of microalgal growth and cultivation parameters for increasing bioenergy potential: Case study using the oleaginous microalga Chlorella pyrenoidosa Chick (IPPAS C2)', Algal Research, vol. 40.
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Sutherland, DL & Ralph, PJ 2019, 'Microalgal bioremediation of emerging contaminants - Opportunities and challenges.', Water research, vol. 164.
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Tan, ZH, Zhao, JF, Wang, GZ, Chen, MP, Yang, LY, He, CS, Restrepo-Coupe, N, Peng, SS, Liu, XY, da Rocha, HR, Kosugi, Y, Hirano, T, Saleska, SR, Goulden, ML, Zeng, J, Ding, FJ, Gao, F & Song, L 2019, 'Surface conductance for evapotranspiration of tropical forests: Calculations, variations, and controls', Agricultural and Forest Meteorology, vol. 275, pp. 317-328.
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Thomson, A, Trevathan-Tackett, S, Ralph, P, Macreadie, P & Maher, D 2019, 'Bioturbator-stimulated loss of seagrass sediment carbon stocks', Limnology and Oceanography, vol. 64, pp. 342-356.
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Trevathan-Tackett, SM, Sherman, CDH, Huggett, MJ, Campbell, AH, Laverock, B, Hurtado-McCormick, V, Seymour, JR, Firl, A, Messer, LF, Ainsworth, TD, Negandhi, KL, Daffonchio, D, Egan, S, Engelen, AH, Fusi, M, Thomas, T, Vann, L, Hernandez-Agreda, A, Gan, HM, Marzinelli, EM, Steinberg, PD, Hardtke, L & Macreadie, PI 2019, 'A horizon scan of priorities for coastal marine microbiome research.', Nature ecology & evolution.
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Verma, A, Barua, A, Ruvindy, R, Savela, H, Ajani, PA & Murray, SA 2019, 'The Genetic Basis of Toxin Biosynthesis in Dinoflagellates.', Microorganisms, vol. 7, no. 8.
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Verma, A, Kazandjian, A, Sarowar, C, Harwood, DT, Murray, JS, Pargmann, I, Hoppenrath, M & Murray, SA 2019, 'Morphology and Phylogenetics of Benthic Prorocentrum Species (Dinophyceae) from Tropical Northwestern Australia.', Toxins, vol. 11, no. 10.
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Verma, A, Kohli, GS, Harwood, DT, Ralph, PJ & Murray, SA 2019, 'Transcriptomic investigation into polyketide toxin synthesis in Ostreopsis (Dinophyceae) species', Environmental Microbiology.
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Wangpraseurt, D, Jacques, S, Lyndby, N, Holm, JB, Pages, CF & Kuhl, M 2019, 'Microscale light management and inherent optical properties of intact corals studied with optical coherence tomography', JOURNAL OF THE ROYAL SOCIETY INTERFACE, vol. 16, no. 151.
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Wangpraseurt, D, Lichtenberg, M, Jacques, SL, Larkum, AWD & Kühl, M 2019, 'Optical Properties of Corals Distort Variable Chlorophyll Fluorescence Measurements.', Plant physiology, vol. 179, no. 4, pp. 1608-1619.
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Watson, CJ, Restrepo-Coupe, N & Huete, AR 2019, 'Multi-scale phenology of temperate grasslands: Improving monitoring and management with near-surface phenocams', Frontiers in Environmental Science, vol. 7, no. FEB.
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Wu, S, Gu, W, Huang, A, Li, Y, Kumar, M, Lim, PE, Huan, L, Gao, S & Wang, G 2019, 'Elevated CO2 improves both lipid accumulation and growth rate in the glucose-6-phosphate dehydrogenase engineered Phaeodactylum tricornutum.', Microbial cell factories, vol. 18, no. 1.
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Xie, Q, Dash, J, Huete, A, Jiang, A, Yin, G, Ding, Y, Peng, D, Hall, CC, Brown, L, Shi, Y, Ye, H, Dong, Y & Huang, W 2019, 'Retrieval of crop biophysical parameters from Sentinel-2 remote sensing imagery', International Journal of Applied Earth Observation and Geoinformation, vol. 80, pp. 187-195.
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Xie, Z, Huete, A, Cleverly, J, Phinn, S, McDonald-Madden, E, Cao, Y & Qin, F 2019, 'Multi-climate mode interactions drive hydrological and vegetation responses to hydroclimatic extremes in Australia', Remote Sensing of Environment, vol. 231.
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You, F, Zhang, L, Ye, J & Huang, L 2019, 'Microbial decomposition of biomass residues mitigated hydrogeochemical dynamics in strongly alkaline bauxite residues.', The Science of the total environment, vol. 663, pp. 216-226.
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Zapata, J, Meynard, A, Anguita, C, Espinoza, C, Alvear, P, Kumar, M & Contreras-Porcia, L 2019, 'Ecophysiological differentiation led distribution of Pyropia species inferred through environmental stress.', Journal of phycology.
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Zavřel, T, Faizi, M, Loureiro, C, Poschmann, G, Stühler, K, Sinetova, M, Zorina, A, Steuer, R & Červený, J 2019, 'Quantitative insights into the cyanobacterial cell economy.', eLife, vol. 8.
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Zhu, Y, Suggett, DJ, Liu, C, He, J, Lin, L, Le, F, Ishizaka, J, Goes, J & Hao, Q 2019, 'Primary productivity dynamics in the summer Arctic Ocean confirms broad regulation of the electron requirement for carbon fixation by light-phytoplankton community interaction', Frontiers in Marine Science, vol. 6, no. May.
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Conferences

Ajani, P, Farrell, H, Hallegraeff, G, Helleren, S, Lamb, P, Turnbull, A, Zammit, A & Murray, S 2019, 'Diarrhetic Shellfish Toxins in Australian Shellfish', Australian Shellfish Quality Assurance Advisory Committee's National Shellfish Symposium, Perth, WA.

Akkineni, AR, Trampe, E, Koren, K, Lode, A, Krujatz, F, Kühl, M & Gelinsky, M 2019, 'In situ quantification of local O 2 concentration in 3D bioprinted constructs using luminescent nanoparticles', Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium, p. 135.
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Murray, S, Verma, A, Palanisami, S & Ajani, P 2019, 'The use of eDNA and arrays for precise estuarine water quality assessment', 3rd Australian and New Zealand Marine Biotechnology Society Conference, Sydney, Australia.

Schreiber, I, Muzika, F & Červený, J 2019, 'Reaction Networks, Oscillatory Motifs and Parameter Estimation in Biochemical Systems', Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 30-41.
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Verma, A, Palanisami, S, Ajani, P & Murray, S 2019, 'Novel molecular ecology tools to predict harmful algal blooms in oyster- producing estuaries', Australian Marine Science Association Conference, Freemantle, Australia.