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Publications

Chapters

Kuhl, M, Fenchel, T & Kazmierczak, J 2003, 'Growth, structure and calcification potential of an artificial cyanobacterial mat' in Krumbein, WE, Paterson, D & Zavarzin, G (eds), Fossil and recent biofilms, a natural history of life on planet Earth, Kluwer Academic Publishers, Dordrecht, pp. 77-102.

Raven, JA & Skene, KR 2003, 'Chemistry of the early oceans: The environment of early life' in Evolution on Planet Earth: The Impact of the Physical Environment, pp. 55-64.
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Journal articles

Belli, SI, Monnerat, S, Schaff, C, Masina, S, Noll, T, Myler, PJ, Stuart, K & Fasel, N 2003, 'Sense and antisense transcripts in the histone (HIS-1) locus of Leishmania major', International Journal of Parasitology, vol. 33, pp. 965-975.
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Belli, SI, Wallach, M & Smith, NC 2003, 'Cloning and characterization of the 82 kDa tyrosine-rich sexual stage glycoprotein, GAM82, and its role in oocyst wall formation in the apicomplexan parasite, Eimeria maxima', Gene, vol. 307, pp. 201-212.
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Belli, SI, Wallach, M, Luxford, C, Davies, MJ & Smith, NC 2003, 'Roles of tyrosine-rich precursor glycoproteins and dityrosine- and 3,4-dihydroxyphenylalanine-mediated protein cross-linking in development of the oocyst wall in the coccidian parasite Eimeria maxima', Eukaryotic Cell, vol. 2, no. 3, pp. 456-464.
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Bibby, TS, Nield, J, Chen, M, Larkum, AWD & Barber, J 2003, 'Structure of a photosystem II supercomplex isolated from Prochloron didemni retaining its chlorophyll a/b light-harvesting system', Proceedings of the National Academy of Sciences of the United States of America, vol. 100, no. 15, pp. 9050-9054.
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Choinski, JS, Ralph, PJ & Eamus, D 2003, 'Changes in photosynthesis during leaf expansion in Corymbia gummifera', Australian Journal Of Botany, vol. 51, no. 1, pp. 111-118.
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Davey, MS, Suggett, DJ, Geider, RJ & Taylor, AR 2003, 'Phytoplankton plasma membrane redox activity: Effect of iron limitation and interaction with photosynthesis', Journal Of Phycology, vol. 39, no. 6, pp. 1132-1144.
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Dufresne, A, Salanoubat, M, Partensky, F, Artiguenave, F, Axmann, IM, Barbe, V, Duprat, S, Galperin, MY, Koonin, EV, Le Gall, F, Makarova, KS, Ostrowski, M, Oztas, S, Robert, C, Rogozin, IB, Scanlan, DJ, de Marsac, NT, Weissenbach, J, Wincker, P, Wolf, YI & Hess, WR 2003, 'Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome', PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, vol. 100, no. 17, pp. 10020-10025.
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Ferguson, DJ, Belli, SI, Smith, NC & Wallach, M 2003, 'The development of the macrogamete and oocyst wall in Eimeria maxima: immuno-light and electron microscopy', International Journal For Parasitology, vol. 33, no. 12, pp. 1329-1340.
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Ferris, MJ, Kuhl, M, Wieland, A & Ward, DM 2003, 'Cyanobacterial Ecotypes in Different Optical Microenvironments of a 68 degrees C Hot Spring Mat Community Revealed by 16S-23S rRNA Internal Transcribed Spacer Region Variation', Applied and Environmental Microbiology, vol. 69, no. 5, pp. 2893-2898.
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Ferris, MJ, Magnuson, TS, Fagg, JA, Thar, R, Kuhl, M, Sheehan, KB & Henson, JM 2003, 'Microbially mediated sulphide production in a thermal, acidic algal mat community in Yellowstone National Park', Environmental Microbiology, vol. 5, no. 10, pp. 954-960.
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Gilmore, AM, Larkum, AWD, Salih, A, Itoh, S, Shibata, Y, Bena, C, Yamasaki, H, Papina, M & Van Woesik, R 2003, 'Simultaneous Time Resolution of the Emission Spectra of Fluorescent Proteins and Zooxanthellar Chlorophyll in Reef-building Corals', Photochemistry and Photobiology, vol. 77, no. 5, pp. 515-523.
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Giordano, M, Norici, A, Forssen, M, Eriksson, M & Raven, JA 2003, 'An anaplerotic role for mitochondrial carbonic anhydrase in Chlamydomonas reinhardtii', PLANT PHYSIOLOGY, vol. 132, no. 4, pp. 2126-2134.
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Hawes, I, Riis, T, Sutherland, D & Flanagan, M 2003, 'Physical constraints to aquatic plant growth in New Zealand lakes', JOURNAL OF AQUATIC PLANT MANAGEMENT, vol. 41, pp. 44-52.

Hawes, I, Sutherland, D & Hanelt, D 2003, 'The use of pulse amplitude modulated fluorometry to determine fine-scale temporal and spatial variation of in situ photosynthetic activity within an Isoetes-dominated canopy', AQUATIC BOTANY, vol. 77, no. 1, pp. 1-15.
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Helfrich, M, Bommer, B, Oster, U, Klement, H, Mayer, K, Larkum, AWD & Rüdiger, W 2003, 'Chlorophylls of the c family: Absolute configuration and inhibition of NADPH:protochlorophyllide oxidoreductase', Biochimica et Biophysica Acta - Bioenergetics, vol. 1605, no. 1-3, pp. 97-103.
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Hohnberg, D, Ralph, PJ & Jones, H 2003, 'Toxicity of the herbicide atrazine at environmental concentrations to Vallisneria Gigantea, assessed using chlorophyll fluorescence', Australasian Journal of Ecotoxicology, vol. 9, pp. 93-100.
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Jermiin, LS, Ho, SYW, Ababneh, F, Robinson, J & Larkum, AWD 2003, 'Hetero: a program to simulate the evolution of DNA on a four-taxon tree.', Applied bioinformatics, vol. 2, no. 3, pp. 159-163.
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Kustka, A, Sanudo-Wilhelmy, S, Carpenter, EJ, Capone, DG & Raven, JA 2003, 'A revised estimate of the iron use efficiency of nitrogen fixation, with special reference to the marine cyanobacterium Trichodesmium spp. (Cyanophyta)', JOURNAL OF PHYCOLOGY, vol. 39, no. 1, pp. 12-25.
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Larkum, A, Koch, EW & Kuhl, M 2003, 'Diffusive boundary layers and photosynthesis of the epilithic algal community of coral reefs', Marine Biology, vol. 142, no. 5, pp. 1073-1082.
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Larkum, AWD 2003, 'Contributions of henrik lundegårdh.', Photosynthesis research, vol. 76, no. 1-3, pp. 105-110.
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Larkum, AWD, Koch, EMW & Kuhl, M 2003, 'Diffusive boundary layers and photosynthesis of the epilithic algal community of coral reefs', MARINE BIOLOGY, vol. 142, no. 6, pp. 1073-1082.
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Lenzen, M, Murray, SA, Korte, B & Dey, CJ 2003, 'Environmental impact assessment including indirect effects - a case study using input - output analysis', Environmental Impact Assessment Review, vol. 23, pp. 263-282.

Macinnis-Ng, CM & Ralph, PJ 2003, 'In situ impact of petrochemicals on the photosynthesis of the seagrass Zostera capricorni', Marine Pollution Bulletin, vol. 46, no. 11, pp. 1395-1407.
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Macinnis-Ng, CM & Ralph, PJ 2003, 'Short-term response and recovery of Zostera capricorni photosynthesis after herbicide exposure', Aquatic Botany, vol. 76, no. 1, pp. 1-15.
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Mi, D, Chen, M, Lin, S, Lince, M, Larkum, AWD & Blankenship, RE 2003, 'Excitation dynamics in the core antenna in the photosystem I reaction center of the chlorophyll d-containing photosynthetic prokaryote acaryochloris marina', Journal of Physical Chemistry B, vol. 107, no. 6, pp. 1452-1457.
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Mitakakis, T, O'meara, T & Tovey, E 2003, 'The effect of sunlight on allergen release from spores of the fungus Alternaria', Grana, vol. 42, no. 1, pp. 43-46.
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Moore, CM, Suggett, DJ, Holligan, PM, Sharples, J, Abraham, ER, Lucas, MI, Rippeth, T, Fisher, NR, Simpson, JH & Hydes, D 2003, 'Physical controls on phytoplankton physiology and production at a shelf sea front: a fast repetition-rate fluorometer based field study', Marine Ecology Progress Series, vol. 259, pp. 29-45.
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Mountfort, DO, Kaspar, HF, Asher, RA & Sutherland, D 2003, 'Influences of pond geochemistry, temperature, and freeze-thaw on terminal anaerobic processes occurring in sediments of six ponds of the McMurdo Ice Shelf, near Bratina Island, Antarctica', APPLIED AND ENVIRONMENTAL MICROBIOLOGY, vol. 69, no. 1, pp. 583-592.
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Nieuwenburg, P, Clarke, R, Cai, Z, Chen, M, Larkum, A, Cabral, N, Ghiggino, K & Reimers, JR 2003, 'Examination Of The Photophysical Processes Of Chlorophyll D Leading To A Clarification Of Proposed Uphill Energy Transfer Processes In Cells Of Acaryochloris Marina', Photochemistry And Photobiology, vol. 77, no. 6, pp. 628-637.
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Pritchard, TR, Lee, RS, Ajani, PA, Rendell, PS, Black, K & Koop, K 2003, 'Phytoplankton responses to nutrient sources in coastal waters off southeastern Australia', Aquatic Ecosystem Health and Management, vol. 6, no. 2 SPEC. ISS., pp. 105-117.
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Purkerson, DG, Doblin, MA, Bollens, SM, Luoma, SN & Cutter, GA 2003, 'Selenium in San Francisco Bay zooplankton: Potential effects of hydrodynamics and food web interactions', Estuaries, vol. 26, no. 4A, pp. 956-969.
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Raven, JA 2003, 'Can plants rely on nitrate?', TRENDS IN PLANT SCIENCE, vol. 8, no. 7, pp. 314-315.
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Raven, JA 2003, 'Carboxysomes and peptidoglycan walls of cyanelles: possible physiological functions', EUROPEAN JOURNAL OF PHYCOLOGY, vol. 38, no. 1, pp. 47-53.
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Raven, JA 2003, 'Cycling silicon - the role of accumulation in plants - Commentary', NEW PHYTOLOGIST, vol. 158, no. 3, pp. 419-421.
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Raven, JA 2003, 'Inorganic carbon concentrating mechanisms in relation to the biology of algae', PHOTOSYNTHESIS RESEARCH, vol. 77, no. 2-3, pp. 155-171.
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Raven, JA 2003, 'Long-distance transport in non-vascular plants', PLANT CELL AND ENVIRONMENT, vol. 26, no. 1, pp. 73-85.
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Raven, JA & Allen, JF 2003, 'Genomics and chloroplast evolution: what did cyanobacteria do for plants?', GENOME BIOLOGY, vol. 4, no. 3.
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Raven, JA & Taylor, R 2003, 'Macroalgal growth in nutrient-enriched estuaries: A biogeochemical and evolutionary perspective', Water, Air, and Soil Pollution: Focus, vol. 3, no. 1, pp. 7-26.
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Runcie, JW, Ritchie, RJ & Larkum, AWD 2003, 'Uptake kinetics and assimilation of inorganic nitrogen by Catenella nipae and Ulva lactuca', Aquatic Botany, vol. 76, no. 2, pp. 155-174.
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Stopar, D, Cerne, A, Zigman, M, Poljsak-Prijatelj, M & Turk, V 2003, 'Viral abundance and a high proportion of lysogens suggest that viruses are important members of the microbial community in the Gulf of Trieste', MICROBIAL ECOLOGY, vol. 46, no. 2, pp. 249-256.
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Suggett, DJ, Oxborough, K, Baker, N, Macintyre, H, Kana, T & Geider, R 2003, 'Fast Repetition Rate And Pulse Amplitude Modulation Chlorophyll A Fluorescence Measurements For Assessment Of Photosynthetic Electron Transport In Marine Phytoplankton', European Journal Of Phycology, vol. 38, no. 4, pp. 371-384.
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Thar, R & Kuhl, M 2003, 'Bacteria are not too small for spatial sensing of chemical gradients: An experimental evidence', Proceedings of the National Academy of Sciences, vol. 100, no. 10, pp. 5748-5753.
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Waters, RL, Mitchell, JG & Seymour, JR 2003, 'Geostatistical characterisation of centimetre-scale spatial structure of in vivo fluorescence', Marine Ecology Progress Series, vol. 251.

Wieland, A, Kuhl, M, McGowan, L, Fourcans, A, Duran, R, Caumette, P, de Oteyza, TG, Grimalt, JO, Sole, A, Diestra, E, Esteve, I & Herbert, RA 2003, 'Microbial mats on the Orkney Islands revisited: Microenvironment and microbial community composition', Microbial Ecology, vol. 46, pp. 371-390.
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Witcombe, DM, Belli, SI, Wallach, M & Smith, NC 2003, 'Molecular characterisation of EmTFP250: a novel member of the TRAP protein family in Eimeria maxima', International Journal For Parasitology, vol. 33, no. 7, pp. 691-702.
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Conferences

Allen, JF & Raven, JA 2003, 'Chloroplasts and mitochondria: functional genomics and evolution - Papers of Discussion Meetings organized and edited by J. F. Allen and J. A. Raven - Meetings held at The Royal Society on 26 and 27 June 2002 and at the Novartis Foundation on 28 June 2002 - Introduction', PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, ROYAL SOC, pp. 3-4.
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Allen, JF, Raven, JA, Douglas, AE, Cavalier-Smith, T, Blankenship, RE, Lopez-Juez, E, Bauer, CE, Russell, MJ, Martin, W, Nisbet, E, Doolittle, WF, Embley, TM, Whatley, FR & Tovar, J 2003, 'General discussion', PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES, ROYAL SOC LONDON, pp. 217-222.
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Douglas, AE & Raven, JA 2002, 'Genomes at the interface between bacteria and organelles', PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES, Royal-Society Discussion Meeting, ROYAL SOC LONDON, LONDON, ENGLAND, pp. 5-17.
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Salih, A, Cox, G & Larkum, AW 2003, 'Cellular organization & spectral diversity of GFP-like proteins in live coral cells studied by single & multi-photon imaging & microspectroscopy', Proceedings of SPIE - The International Society for Optical Engineering, pp. 194-200.
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