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Publications

Chapters

Field, C 2011, 'Towards adaptation measures in protecting mangroves from climate change' in Jenkins, AL (ed), Climate Change Adaptation: Ecology, Mitigation and Management, Nova Science Publishers, USA, pp. 65-85.

Mazard, S, Ostrowski, M, Garczarek, L & Scanlan, DJ 2011, 'A Targeted Metagenomic Approach to Determine the "Population Genome" of Marine Synechococcus' in Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats, pp. 301-307.
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Ralph, PJ, Wilhelm, C, Lavaud, J, Jakob, T, Petrou, K & Kranz, SA 2011, 'Fluorescence as a Tool to Understand Changes in Photosynthetic Electron Flow Regulation' in Suggett, DJ, Borowitzka, MA & Prasil, O (eds), Chlorophyll a Fluorescence in Aquatic Sciences : Methods and Applications, Springer, United Kingdom, pp. 75-89.
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Warner, ME, Lesser, MP & Ralph, PJ 2011, 'Chlorophyll fluorescence in reef building corals' in Suggett, DJ, Borowitzka, MA & Prasil, O (eds), Chlorophyll a Fluorescence in Aquatic Sciences : Methods and Applications, Springer, UK, pp. 209-221.
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Journal articles

Abbriano, RM, Carranza, MM, Hogle, SL, Levin, RA, Netburn, AN, Seto, KL, Snyder, SM & Franks, PJS 2011, 'DEEPWATER HORIZON OIL SPILL A Review of the Planktonic Response', OCEANOGRAPHY, vol. 24, no. 3, pp. 294-301.
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Baird, ME, Suthers, I, Griffin, DA, Hollings, B, Pattiaratchi, CB, Everett, J, Roughan, M, Oubelkheir, K & Doblin, MA 2011, 'The effect of surface flooding on the physical-biogeochemical dynamics of a warm-core eddy off southeast Australia', Deep Sea Research Part II: Topical Studies in Oceanography, vol. 58, no. 5, pp. 592-605.
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Behrendt, L, Larkum, A, Norman, A, Qvortrup, K, Chen, M, Ralph, PJ, Sorensen, SJ, Trampe, E & Kuhl, M 2011, 'Endolithic chlorophyll d-containing phototrophs', ISME Journal, vol. 5, no. 6, pp. 1072-1076.
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Ben-Dov, E, Siboni, N, Shapiro, OH, Arotsker, L & Kushmaro, A 2011, 'Substitution by Inosine at the 3 '-Ultimate and Penultimate Positions of 16S rRNA Gene Universal Primers', MICROBIAL ECOLOGY, vol. 61, no. 1, pp. 1-6.
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Brading, P, Warner, ME, Davey, P, Smith, DJ, Achterberg, EP & Suggett, DJ 2011, 'Differential effects of ocean acidification on growth and photosynthesis among phylotypes of Symbiodinium (Dinophyceae)', Limnology And Oceanography, vol. 56, no. 3, pp. 927-938.
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Chan, Y-W, Mohr, R, Millard, AD, Holmes, AB, Larkum, AW, Whitworth, AL, Mann, NH, Scanlan, DJ, Hess, WR & Clokie, MRJ 2011, 'Discovery of Cyanophage Genomes Which Contain Mitochondrial DNA Polymerase', MOLECULAR BIOLOGY AND EVOLUTION, vol. 28, no. 8, pp. 2269-2274.
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Doblin, MA, Petrou, K, Shelly, K, Westwood, K, van den Enden, R, Wright, S, Griffiths, B & Ralph, PJ 2011, 'Diel variation of chlorophyll-a fluorescence, phytoplankton pigments and productivity in the Sub-Antarctic and Polar Front Zones south of Tasmania, Australia', Deep Sea Research Part II: Topical Studies in Oceanography, vol. 58, no. 21-22, pp. 2189-2199.
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Dongen-Vogels, V, Seymour, JR, Middleton, JF, Mitchell, JG & Seuront, L 2011, 'Influence of local physical events on picophytoplankton spatial and temporal dynamics in South Australian continental shelf waters', Journal of Plankton Research, vol. 33, no. 12, pp. 1825-1841.
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Earp, AA, Hanson, CE, Ralph, PJ, Brando, VE, Allen, S, Baird, ME, Clementson, L, Daniel, P, Dekker, AG, Fearns, PR, Parslow, JS, Strutton, PG, Thompson, P, Underwood, M, Weeks, S & Doblin, MA 2011, 'Review of fluorescent standards for calibration of in situ fluorometers: Recommendations applied in coastal and ocean observing programs', Optics Express, vol. 19, no. 27, pp. 26768-26782.
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Gupta, V, Baghel, RS, Kumar, M, Kumari, P, Mantri, VA, Reddy, CRK & Jha, B 2011, 'Growth and agarose characteristics of isomorphic gametophyte (male and female) and sporophyte of Gracilaria dura and their marker assisted selection', AQUACULTURE, vol. 318, no. 3-4, pp. 389-396.
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Gupta, V, Kumar, M, Brahmbhatt, H, Reddy, CRK, Seth, A & Jha, B 2011, 'Simultaneous determination of different endogenetic plant growth regulators in common green seaweeds using dispersive liquid-liquid microextraction method', PLANT PHYSIOLOGY AND BIOCHEMISTRY, vol. 49, no. 11, pp. 1259-1263.
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Gupta, V, Kumar, M, Kumari, P, Reddy, CRK & Jha, B 2011, 'Optimization of protoplast yields from the red algae Gracilaria dura (C. Agardh) J. Agardh and G. verrucosa (Huds.) Papenfuss', JOURNAL OF APPLIED PHYCOLOGY, vol. 23, no. 2, pp. 209-218.
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Hassler, CS, Djajadikarta, J, Doblin, MA, Everett, J & Thompson, P 2011, 'Characterisation Of Water Masses And Phytoplankton Nutrient Limitation In The East Australian Current Separation Zone During Spring 2008', Deep Sea Research Part II: Topical Studies in Oceanography, vol. 58, no. 5, pp. 664-677.
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Hill, R, Brown, CM, DeZeeuw, K, Campbell, DA & Ralph, PJ 2011, 'Increased rate of D1 repair in coral symbionts during bleaching is insufficient to counter accelerated photo-inactivation', Limnology and Oceanography, vol. 56, no. 1, pp. 139-146.
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Hoeksema, BW & Matthews, JL 2011, 'Contrasting bleaching patterns in mushroom coral assemblages at Koh Tao, Gulf of Thailand', CORAL REEFS, vol. 30, no. 1, pp. 95-95.
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Jeffries, TC, Seymour, JR, Gilbert, JA, Dinsdale, EA, Newton, K, Leterme, SS, Roudnew, B, Smith, RJ, Seuront, L & Mitchell, JG 2011, 'Substrate type determines metagenomic profiles from diverse chemical habitats', PLoS One, vol. 6, no. 9, pp. 1-9.
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Jimenez Denness, IM, Kuhl, M, Larkum, A & Ralph, PJ 2011, 'Effects of flow and colony morphology on the thermal boundary layer of corals', Journal of the Royal Society Interface, vol. 8, no. 65, pp. 1785-1795.
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Kerrison, P, Hall-Spencer, JM, Suggett, DJ, Hepburn, LJ & Steinke, M 2011, 'Assessment of pH variability at a coastal CO2 vent for ocean acidification studies', Estuarine Coastal And Shelf Science, vol. 94, no. 2, pp. 129-137.
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Khan, N-UH, Pandya, N, Maity, NC, Kumar, M, Patel, RM, Kureshy, RI, Abdi, SHR, Mishra, S, Das, S & Bajaj, HC 2011, 'Influence of chirality of V(V) Schiff base complexes on DNA, BSA binding and cleavage activity', EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, vol. 46, no. 10, pp. 5074-5085.
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Kirchhoff, H, Hall, C, Wood, M, Herbstová, M, Tsabari, O, Nevo, R, Charuvi, D, Shimoni, E & Reich, Z 2011, 'Dynamic control of protein diffusion within the granal thylakoid lumen', Proceedings of the National Academy of Sciences of the United States of America, vol. 108, no. 50, pp. 20248-20253.
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Kumar, M, Gupta, V, Trivedi, N, Kumari, P, Bijo, AJ, Reddy, CRK & Jha, B 2011, 'Desiccation induced oxidative stress and its biochemical responses in intertidal red alga Gracilaria corticata (Gracilariales, Rhodophyta)', ENVIRONMENTAL AND EXPERIMENTAL BOTANY, vol. 72, no. 2, pp. 194-201.
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Kumar, M, Kumari, P, Trivedi, N, Shukla, MK, Gupta, V, Reddy, CRK & Jha, B 2011, 'Minerals, PUFAs and antioxidant properties of some tropical seaweed from Saurashtra coast of India', Journal of Applied Phycology, vol. 23, no. 5, pp. 797-810.
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Kumar, M, Trivedi, N, Reddy, CRK & Jha, B 2011, 'Toxic Effects of Imidazolium Ionic Liquids on the Green Seaweed Ulva lactuca: Oxidative Stress and DNA Damage', CHEMICAL RESEARCH IN TOXICOLOGY, vol. 24, no. 11, pp. 1882-1890.
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Larkum, A, Salih, A & Kuhl, M 2011, 'Rapid Mass Movement of Chloroplasts during Segment Formation of the Calcifying Siphonalean Green Alga, Halimeda macroloba', PLoS One, vol. 6, no. 7, pp. 1-9.
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Mai, K, Smith, NC, Feng, Z, Katrib, M, Slapeta, J, Slapetova, I, Wallach, M, Luxford, C, Davies, MJ, Zhang, X, Norton, RS & Belli, SI 2011, 'Peroxidase catalysed cross-linking of an intrinsically unstructured protein via dityrosine bonds in the oocyst wall of the apicomplexan parasite, Eimeria maxima', International Journal For Parasitology, vol. 41, no. 11, pp. 1157-1164.
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Marcos, M, Seymour, JR, Luhar, M, Mitchell, JG, Durham, WM, Macke, A & Stocker, R 2011, 'Microbial Alignment In Flow Changes Ocean Light Climate', Proceedings Of The National Academy Of Sciences Of The United States Of America, vol. 108, no. 10, pp. 3860-3864.
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Mella-Flores, D, Mazard, S, Humily, F, Partensky, F, Mahe, F, Bariat, L, Courties, C, Marie, D, Ras, J, Mauriac, R, Jeanthon, C, Bendif, EM, Ostrowski, M, Scanlan, DJ & Garczarek, L 2011, 'Is the distribution of Prochlorococcus and Synechococcus ecotypes in the Mediterranean Sea affected by global warming?', BIOGEOSCIENCES, vol. 8, no. 9, pp. 2785-2804.
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Munro, TP, Mahler, SM, Huang, EP, Chin, DY & Gray, PP 2011, 'Bridging the gap', mAbs, vol. 3, no. 5, pp. 440-452.
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Nagy, G, Posselt, D, Kovacs, L, Holm, JK, Szabo, M, Ughy, B, Rosta, L, Peters, J, Timmins, P & Garab, G 2011, 'Reversible membrane reorganizations during photosynthesis in vivo: revealed by small-angle neutron scattering', Biochemical Journal, vol. 436, pp. 225-230.
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Ostrowski, M, Tetu, S, Hassan, K, Penesyan, A, Lim, K, Elbourne, L, Li, L, Varkey, D & Paulsen, I 2011, 'From omics to systems biology: Exploring the mystery box of microbial life', Microbiology Australia, vol. 32, no. 4, pp. 147-147.
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Pernice, M, Dunn, SR, Miard, T, Dufour, S, Dove, S & Hoegh-Guldberg, O 2011, 'Regulation of Apoptotic Mediators Reveals Dynamic Responses to Thermal Stress in the Reef Building Coral Acropora millepora', PLOS ONE, vol. 6, no. 1.
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Petrou, K & Ralph, PJ 2011, 'Photosynthesis and net primary productivity in three Antarctic diatoms: possible significance for their distribution in the Antarctic marine ecosystem', Marine Ecology Progress Series, vol. 437, pp. 27-40.
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Petrou, K, Doblin, MA & Ralph, PJ 2011, 'Heterogeneity in the photoprotective capacity of three Antarctic diatoms during short-term changes in salinity and temperature', Marine Biology, vol. 158, no. 5, pp. 1029-1041.
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Petrou, K, Hassler, CS, Doblin, MA, Shelly, K, Schoemann, V, van den Enden, R, Wright, S & Ralph, PJ 2011, 'Iron-limitation and high light stress on phytoplankton populations from the Australian Sub-Antarctic Zone (SAZ)', Deep Sea Research Part II: Topical Studies in Oceanography, vol. 58, no. 21-22, pp. 2200-2211.
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Petrou, K, Hill, R, Doblin, MA, McMinn, A, Johnson, R, Wright, SW & Ralph, PJ 2011, 'Photoprotection of sea-ice microalgal communities from the east Antarctic pack ice', Journal of Phycology, vol. 47, no. 1, pp. 77-86.
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Ponton, F, Chapuis, M-P, Pernice, M, Sword, GA & Simpson, SJ 2011, 'Evaluation of potential reference genes for reverse transcription-qPCR studies of physiological responses in Drosophila melanogaster', JOURNAL OF INSECT PHYSIOLOGY, vol. 57, no. 6, pp. 840-850.
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Raghu, AV, Unnikrishnan, K, Geetha, SP, Martin, G & Balachandran, I 2011, 'Plant regeneration and production of embelin from organogenic and embryogenic callus cultures of Embelia ribes Burm. f.-a vulnerable medicinal plant', IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT, vol. 47, no. 4, pp. 506-515.
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Rosic, NN, Pernice, M, Dove, S, Dunn, S & Hoegh-Guldberg, O 2011, 'Gene expression profiles of cytosolic heat shock proteins Hsp70 and Hsp90 from symbiotic dinoflagellates in response to thermal stress: possible implications for coral bleaching', CELL STRESS & CHAPERONES, vol. 16, no. 1, pp. 69-80.
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Rosic, NN, Pernice, M, Rodriguez-Lanetty, M & Hoegh-Guldberg, O 2011, 'Validation of Housekeeping Genes for Gene Expression Studies in Symbiodinium Exposed to Thermal and Light Stress', MARINE BIOTECHNOLOGY, vol. 13, no. 3, pp. 355-365.
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Safranek, D, Cerveny, J, Klement, M, Pospisilova, J, Brim, L, Lazar, D & Nedbal, L 2011, 'E-photosynthesis: Web-based platform for modeling of complex photosynthetic processes', BIOSYSTEMS, vol. 103, no. 2, pp. 115-124.
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Shukla, MK, Kumar, M, Prasad, K, Reddy, CRK & Jha, B 2011, 'Partial characterization of sulfohydrolase from Gracilaria dura and evaluation of its potential application in improvement of the agar quality', CARBOHYDRATE POLYMERS, vol. 85, no. 1, pp. 157-163.
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Singh, RP, Gupta, V, Kumari, P, Kumar, M, Reddy, CRK, Prasad, K & Jha, B 2011, 'Purification and partial characterization of an extracellular alginate lyase from Aspergillus oryzae isolated from brown seaweed', JOURNAL OF APPLIED PHYCOLOGY, vol. 23, no. 4, pp. 755-762.
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Sinutok, S, Hill, R, Doblin, MA, Wuhrer, R & Ralph, PJ 2011, 'Warmer more acidic conditions cause decreased productivity and calcification in subtropical coral reef sediment-dwelling calcifiers', Limnology and Oceanography, vol. 56, no. 4, pp. 1200-1212.
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Steinke, M, Brading, P, Kerrison, P, Warner, ME & Suggett, DJ 2011, 'Concentrations of dimethylsulfoniopropionate and dimethyl sulfide are strain-specific in symbiotic dinoflagellates (Symbiodinium sp., Dinophyceae)', Journal Of Phycology, vol. 47, no. 4, pp. 775-783.
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Suggett, DJ & Smith, DJ 2011, 'Interpreting the sign of coral bleaching as friend vs. foe', Global Change Biology, vol. 17, no. 1, pp. 45-55.
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Tao, L, Chen, G, Zhao, L, Xu, J, Huang, E, Liu, A, Marquis, CP & Davis, TP 2011, 'Protein Release from Biodegradable PolyHPMA-Lysozyme Conjugates Resulting in Bioactivity Enhancement', Chemistry - An Asian Journal, vol. 6, no. 6, pp. 1398-1404.
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Thompson, P, Bonham, P, Waite, A, Clementson, L, Cherukuru, N, Hassler, CS & Doblin, MA 2011, 'Contrasting Oceanographic Conditions And Phytoplankton Communities On The East And West Coasts Of Australia', Deep-Sea Research Part Ii-Topical Studies In Oceanography, vol. 58, no. 5, pp. 645-663.
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Trivedi, N, Gupta, V, Kumar, M, Kumari, P, Reddy, CRK & Jha, B 2011, 'An alkali-halotolerant cellulose from Bacillus flexus isolated from green seaweed Ulva lactuca.', Carbohydrate Polymers, vol. 83, no. 2, pp. 891-897.
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Trivedi, N, Gupta, V, Kumar, M, Kumari, P, Reddy, CRK & Jha, B 2011, 'Solvent tolerant marine bacterium Bacillus aquimaris secreting organic solvent stable alkaline cellulase', CHEMOSPHERE, vol. 83, no. 5, pp. 706-712.
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Ulstrup, K, Kuhl, M, van Oppen, MJ, Cooper, TF & Ralph, PJ 2011, 'Variation in photosynthesis and respiration in geographically distinct populations of two reef-building coral species', Aquatic Biology, vol. 12, pp. 241-248.
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Velikova, V, Varkonyi, Z, Szabo, M, Maslenkova, L, Nogues, I, Kovacs, L, Peeva, V, Busheva, M, Garab, G, Sharkey, TD & Loreto, F 2011, 'Increased thermostability of thylakoid membranes in isoprene-emitting leaves probed with three biophysical techniques', Plant Physiology, vol. 157, pp. 905-916.
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Conferences

Craggs, R & Sutherland, D 2011, 'Wastewater Treatment and Biofuel Production in High Rate Algal Ponds', Algae World Australia.

Craggs, R, Park, J, Heubeck, S & Sutherland, D 2011, 'Process Engineering of Wastewater Treatment Algal Biofuel Pond Systems', SCENZ – IChemE in New Zealand Annual Conference, University of Waikato, Hamilton, Hamilton, NZ.

Craggs, R, Sutherland, D, Park, J & Heubeck, S 2011, 'Low Energy Wastewater Treatment, Energy Recovery and Biofuel Production Using Enhanced Pond Systems', International Conference Environmental (Bio)Technologies, Gdansk, Poland.

Craggs, R, Sutherland, DL & Campbell, H 2011, 'Large-Scale demonstration of High Rate Algal Ponds with CO2 addition for enhanced wastewater treatment and biofuel production', Proceedings of the 4th congress of the International Society for Applied Phcology, Halifax, Canada.

Suggett, DJ 2011, 'PHYSIOLOGICAL SIGNATURES OF MICROALGAL PHOTO-ACCLIMATION AND -ADAPTATION TO ENVIRONMENTAL CHANGE', EUROPEAN JOURNAL OF PHYCOLOGY, TAYLOR & FRANCIS LTD, pp. 34-35.

Suggett, DJ, Lawrenz, E, Silsbe, G, Capuzzo, E, Ylostalo, P, Forster, RM, Simis, S, Prasil, O & Kromkamp, JC 2011, 'TOWARDS PREDICTING THE MINIMUM QUANTUM REQUIREMENT FOR CARBON FIXATION IN EUROPEAN SEAS', EUROPEAN JOURNAL OF PHYCOLOGY, TAYLOR & FRANCIS LTD, pp. 54-54.

Reports

de Winton, M, Champion, P & Sutherland, D 2011, Baseline condition of the Hurunui lakes: LakeSPI and turf communities and regional weed surveillance, Hamilton.

Petrou, K, Jimenez Denness, IM, Chartrand, KM, Ralph, PJ & Rasheed, A DEEDI Publication 2011, Seagrass Health Study - Phase II August Update, pp. 1-54, Cairns.

Sutherland, D & Taumoepeau, A 2011, Macrophyte and water quality status of Waituna Lagoon, Christchurch.

Sutherland, DL 2011, Potential aquatic habitat development in the proposed Mokihinui Reservoir, Christchurch, NZ.

Sutherland, DL 2011, Reduced Risks Herbicides – Review of new herbicides available in the United States, Christchurch, NZ.

Sutherland, DL 2011, Water Quality monitoring in the Waiau Arm of Lake Manapouri, Christchurch, NZ.

Sutherland, DL & Champion, P 2011, Rare and threatened turf species, Christchurch, NZ.

Sutherland, DL & Norton, N 2011, Proposed Hunter Downs Irrigation Scheme: assessment of effects on water quality in Wainono Lagoon and options for mitigation, Christchurch, NZ.

Wells, R & Sutherland, DL 2011, Hornwort eradication programme, centennial Lake, Timaru, Hamilton, NZ.

Wells, R, Sutherland, D, Clayton, J & Taumoepeau, A 2011, Upper Waitaki aquatic weeds and the diaquat control option, Hamilton.

Other

Clayton, J, Wells, R & Sutherland, D 2011, 'Lagarosiphon major and the Waitaki Catchment. Workshop on Weeds, Water Quality and the Waitaki Lakes'.

Sutherland, D 2011, 'Water Quality in the Waitaki catchment. Workshop on Weeds, Water Quality and the Waitaki Lakes.'.

Sutherland, D 2011, 'Weed issues in Ohau B and C Canals. Workshop on Weeds, Water Quality and the Waitaki Lakes.'.