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Publications

Books

Labbate, M, Seymour, JR, Lauro, F & Brown, MV 2016, Anthropogenic Impacts on the Microbial Ecology and Function of Aquatic Environments, Frontiers Media SA, Lausanne, Switzerland.
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Chapters

Červený, J, Zavřel, T, Chmelík, D, Búzová, D, Fedorko, J, Literáková, P, Sukačová, K, Segecova, A & Roitsch, T 2016, 'Microalgal adaptive biotechnologies for a sustainable future' in Vačkář, D & Janouš, D (eds), Global Change & Ecosystems, Global Change Research Institute, Czech Academy of Sciences, pp. 148-160.

Commault, A & Weld, RJ 2016, 'Whole-cell Biosensors for Monitoring Bioremediation' in Lear, G (ed), Biofilms in Bioremediation, Caister Academic Press, Norfolk, United Kingdom, pp. 75-91.

Larkum, AW 2016, 'Photosynthesis and Light Harvesting in Algae' in The Physiology of Microalgae, Springer International Publishing, pp. 67-87.
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Ralph, PJ, Hill, R, Doblin, MA & Davy, SK 2016, 'Theory and Application of Pulse Amplitude Modulated Chlorophyll Fluorometry in Coral Health Assessment' in Woodley, CM, Downs, CA, Bruckner, AW, Porter, JW & Galloway, SB (eds), Diseases of Coral, John Wiley & Sons, Hoboken, New Jersey, pp. 506-523.
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Warner, ME & Suggett, DJ 2016, 'The Photobiology of Symbiodinium spp.: Linking Physiological Diversity to the Implications of Stress and Resilience' in The Cnidaria, Past, Present and Future, Springer International Publishing, pp. 489-509.
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Journal articles

Ajani, PA, Larsson, M, Rubio, A, Bush, S, Brett, S & Farrell, H 2016, 'Modelling bloom formation of the toxic dinoflagellates Dinophysis acuminata and Dinophysis caudata in a highly modified estuary, south eastern Australia', Estuarine, Coastal and Shelf Science, vol. 183, pp. 95-106.
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Argyle, PA, Harwood, DT, Rhodes, LL, Champeau, O & Tremblay, LA 2016, 'Toxicity assessment of New Zealand and Pacific dinoflagellates Ostreopsis and Gambierdiscus (Dinophyceae) extracts using bioassays', New Zealand Journal of Marine and Freshwater Research, vol. 50, no. 3, pp. 444-456.
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Baird, ME, Adams, MP, Babcock, RC, Oubelkheir, K, Mongin, M, Wild-Allen, KA, Skerratt, J, Robson, BJ, Petrou, K, Ralph, PJ, O'Brien, KR, Carter, AB, Jarvis, JC & Rasheed, MA 2016, 'A biophysical representation of seagrass growth for application in a complex shallow-water biogeochemical model', ECOLOGICAL MODELLING, vol. 325, pp. 13-27.
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Baird, ME, Cherukuru, N, Jones, E, Margvelashvili, N, Mongin, M, Oubelkheir, K, Ralph, PJ, Rizwi, F, Robson, BJ, Schroeder, T, Skerratt, J, Steven, ADL & Wild-Allen, KA 2016, 'Remote-sensing reflectance and true colour produced by a coupled hydrodynamic, optical, sediment, biogeochemical model of the Great Barrier Reef, Australia: Comparison with satellite data', ENVIRONMENTAL MODELLING & SOFTWARE, vol. 78, pp. 79-96.
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Baker, KG, Robinson, CM, Radford, DT, McInnes, AS, Evenhuis, C & Doblin, MA 2016, 'Thermal performance curves of functional traits aid understanding of thermally induced changes in diatom-mediated biogeochemical fluxes', Frontiers in Marine Science, vol. 3, pp. 1-14.
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Beld, J, Abbriano, R, Finzel, K, Hildebrand, M & Burkart, MD 2016, 'Probing fatty acid metabolism in bacteria, cyanobacteria, green microalgae and diatoms with natural and unnatural fatty acids', MOLECULAR BIOSYSTEMS, vol. 12, no. 4, pp. 1299-1312.
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Bibiloni-Isaksson, J, Seymour, JR, Ingleton, T, van de Kamp, J, Bodrossy, L & Brown, MV 2016, 'Spatial and temporal variability of aerobic anoxygenic photoheterotrophic bacteria along the east coast of Australia', ENVIRONMENTAL MICROBIOLOGY, vol. 18, no. 12, pp. 4485-4500.
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Camp, EF, Hobbs, J-PA, De Brauwer, M, Dumbrell, AJ & Smith, DJ 2016, 'Cohabitation promotes high diversity of clownfishes in the Coral Triangle', PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, vol. 283, no. 1827.
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Camp, EF, Smith, DJ, Evenhuis, C, Enochs, I, Manzello, D, Woodcock, S & Suggett, DJ 2016, 'Acclimatization to high-variance habitats does not enhance physiological tolerance of two key Caribbean corals to future temperature and pH', PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, vol. 283, no. 1831.
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Camp, EF, Suggett, DJ, Gendron, G, Jompa, J, Manfrino, C & Smith, DJ 2016, 'Mangrove and Seagrass Beds Provide Different Biogeochemical Services for Corals Threatened by Climate Change', Frontiers in Marine Science, vol. 3, pp. 1-16.
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Carney, RL, Seymour, JR, Westhorpe, D & Mitrovic, SM 2016, 'Lotic bacterioplankton and phytoplankton community changes under dissolved organic-carbon amendment: evidence for competition for nutrients', MARINE AND FRESHWATER RESEARCH, vol. 67, no. 9, pp. 1362-1373.
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Chartrand, KM, Bryant, CV, Carter, AB, Ralph, PJ & Rasheed, MA 2016, 'Light thresholds to prevent dredging impacts on the great barrier reef seagrass, Zostera muelleri ssp. capricorni', Frontiers in Marine Science, vol. 3, pp. 1-17.
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Cherukuru, N, Davies, PL, Brando, VE, Anstee, JM, Baird, ME, Clementson, LA & Doblin, MA 2016, 'Physical oceanographic processes influence bio-optical properties in the Tasman Sea', JOURNAL OF SEA RESEARCH, vol. 110, pp. 1-7.
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Chowdhury, PR, DeMaere, M, Chapman, T, Worden, P, Charles, IG, Darling, AE & Djordjevic, SP 2016, 'Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease', BMC MICROBIOLOGY, vol. 16.
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Commault, A, Lear, G, Bouvier, S, Feiler, L, Karacs, J & Weld, R 2016, 'Geobacter-dominated biofilms used as amperometric BOD sensors', Biochemical Engineering Journal, vol. 109, pp. 88-95.
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Cruz, JA, Savage, LJ, Zegarac, R, Hall, CC, Satoh-Cruz, M, Davis, GA, Kovac, WK, Chen, J & Kramer, DM 2016, 'Dynamic Environmental Photosynthetic Imaging Reveals Emergent Phenotypes', CELL SYSTEMS, vol. 2, no. 6, pp. 365-377.
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Dana, S, Herdean, A, Lundin, B & Spetea, C 2016, 'Each of the chloroplast potassium efflux antiporters affects photosynthesis and growth of fully developed Arabidopsis rosettes under short-day photoperiod(Retracted article. See vol. 160, pg. 124, 2017)', PHYSIOLOGIA PLANTARUM, vol. 158, no. 4, pp. 483-491.
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Davey, PA, Pernice, M, Sablok, G, Larkum, A, Lee, HT, Golicz, A, Edwards, D, Dolferus, R & Ralph, P 2016, 'The emergence of molecular profiling and omics techniques in seagrass biology; furthering our understanding of seagrasses.', Functional & Integrative Genomics, vol. 16, no. 5, pp. 465-480.
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de Brauwer, M, Camp, E, Jompa, J & Smith, DJ 2016, 'High levels of heterospecific cohabitation among anemonefishes in Hoga Island, Indonesia', Marine Biodiversity, vol. 46, no. 1, pp. 19-20.
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Doblin, MA & van Sebille, E 2016, 'Drift in ocean currents impacts intergenerational microbial exposure to temperature', Proceedings of the National Academy of Sciences of USA, vol. 113, no. 20, pp. 5700-7505.
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Doblin, MA, Petrou, K, Sinutok, S, Seymour, JR, Messer, LF, Brown, MV, Norman, L, Everett, JD, McInnes, AS, Ralph, PJ, Thompson, PA & Hassler, CS 2016, 'Nutrient uplift in a cyclonic eddy increases diversity, primary productivity and iron demand of microbial communities relative to a western boundary current', PEERJ, vol. 4.
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Farrant, GK, Dore, H, Cornejo-Castillo, FM, Partensky, F, Ratin, M, Ostrowski, M, Pitt, FD, Wincker, P, Scanlan, DJ, Iudicone, D, Acinas, SG & Garczarek, L 2016, 'Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria', PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, vol. 113, no. 24, pp. E3365-E3374.
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Flynn, T, Signal, B, Johnson, SL & Gemmell, NJ 2016, 'Mitochondrial genome diversity among six laboratory zebrafish (Danio rerio) strains', MITOCHONDRIAL DNA PART A, vol. 27, no. 6, pp. 4364-4371.
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Flynn, T, Signal, B, Johnson, SL & Gemmell, NJ 2016, 'Mitochondrial genome diversity among six laboratory zebrafish (Danio rerio) strains', Mitochondrial DNA Part A, vol. 27, pp. 4364-4371.

Gardner, SG, Nielsen, DA, Laczka, O, Shimmon, R, Beltran, VH, Ralph, PJ & Petrou, K 2016, 'Dimethylsulfoniopropionate, superoxide dismutase and glutathione as stress response indicators in three corals under short-term hyposalinity stress', PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, vol. 283, no. 1824.
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Garren, M, Son, K, Tout, J, Seymour, JR & Stocker, R 2016, 'Temperature-induced behavioral switches in a bacterial coral pathogen.', The ISME journal, vol. 10, pp. 1363-1372.
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Gloss, BS, Signal, B, Cheetham, SW, Gruhl, F, Kaczorowski, D, Perkins, AC & Dinger, ME 2016, 'High temporal resolution of gene expression dynamics in developing mouse embryonic stem cells', bioRxiv, pp. 084442-084442.

Hassan, KA, Cain, AK, Huang, T, Liu, Q, Elbourne, LDH, Boinett, CJ, Brzoska, AJ, Li, L, Ostrowski, M, Nguyen, TKN, Tran, DHN, Baker, S, Parkhill, J & Paulsen, IT 2016, 'Fluorescence-Based Flow Sorting in Parallel with Transposon Insertion Site Sequencing Identifies Multidrug Efflux Systems in Acinetobacter baumannii', MBIO, vol. 7, no. 5.
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Herdean, A, Nziengui, H, Zsiros, O, Solymosi, K, Garab, G, Lundin, B & Spetea, C 2016, 'The Arabidopsis Thylakoid Chloride Channel AtCLCe Functions in Chloride Homeostasis and Regulation of Photosynthetic Electron Transport', FRONTIERS IN PLANT SCIENCE, vol. 7.
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Herdean, A, Teardo, E, Nilsson, AK, Pfeil, BE, Johansson, ON, Unnep, R, Nagy, G, Zsiros, O, Dana, S, Solymosi, K, Garab, G, Szabo, I, Spetea, C & Lundin, B 2016, 'A voltage-dependent chloride channel fine-tunes photosynthesis in plants', NATURE COMMUNICATIONS, vol. 7.
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Hopkins, FE, Bell, TG, Yang, M, Suggett, DJ & Steinke, M 2016, 'Air exposure of coral is a significant source of dimethylsulfide (DMS) to the atmosphere', SCIENTIFIC REPORTS, vol. 6.
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Jeffries, TC, Curlevski, NJ, Brown, MV, Harrison, DP, Doblin, MA, Petrou, K, Ralph, PJ & Seymour, JR 2016, 'Partitioning of fungal assemblages across different marine habitats', ENVIRONMENTAL MICROBIOLOGY REPORTS, vol. 8, no. 2, pp. 235-238.
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Jeffries, TC, Schmitz Fontes, ML, Harrison, DP, Van-Dongen-Vogels, V, Eyre, BD, Ralph, PJ & Seymour, JR 2016, 'Bacterioplankton Dynamics within a Large Anthropogenically Impacted Urban Estuary.', Frontiers in Microbiology, vol. 6, pp. 1-17.
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Jin, YK, Lundgren, P, Lutz, A, Raina, JB, Howell, EJ, Paley, AS, Willis, BL & van Oppen, MJH 2016, 'Genetic markers for antioxidant capacity in a reef-building coral', Science Advances, vol. 2, no. 5.
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Kahlke, T & Umbers, KDL 2016, 'Bioluminescence', CURRENT BIOLOGY, vol. 26, no. 8, pp. R313-R314.
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Kelleway, JJ, Saintilan, N, Macreadie, PI & Ralph, PJ 2016, 'Sedimentary Factors are Key Predictors of Carbon Storage in SE Australian Saltmarshes', ECOSYSTEMS, vol. 19, no. 5, pp. 865-880.
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Kelleway, JJ, Saintilan, N, Macreadie, PI, Skilbeck, CG, Zawadzki, A & Ralph, PJ 2016, 'Seventy years of continuous encroachment substantially increases "blue carbon' capacity as mangroves replace intertidal salt marshes', GLOBAL CHANGE BIOLOGY, vol. 22, no. 3, pp. 1097-1109.
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Kim, J, Fabris, M, Baart, G, Kim, MK, Goossens, A, Vyverman, W, Falkowski, P & Lun, DS 2016, 'Flux balance analysis of primary metabolism in the diatom Phaeodactylum tricornutum', The Plant Journal, vol. 85, no. 1, pp. 161-176.
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Koyyalamudi, SR, Kuzhiumparambil, U, Nath, CE, Byrne, JA, Fraser, CJ, O'Brien, TA, Earl, JW & Shaw, PJ 2016, 'Development and Validation of a High Pressure Liquid Chromatography-UV Method for the Determination of Treosulfan and Its Epoxy Metabolites in Human Plasma and Its Application in Pharmacokinetic Studies', JOURNAL OF CHROMATOGRAPHIC SCIENCE, vol. 54, no. 3, pp. 326-333.
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Kumar, M, Kuzhiumparambil, U, Pernice, M, Jiang, Z & Ralph, PJ 2016, 'Metabolomics: an emerging frontier of systems biology in marine macrophytes', ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS, vol. 16, pp. 76-92.
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Labbate, M, Seymour, JR, Lauro, F & Brown, MV 2016, 'Anthropogenic Impacts on the Microbial Ecology and Function of Aquatic Environments', FRONTIERS IN MICROBIOLOGY, vol. 7.
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Labeeuw, L, Khey, J, Bramucci, AR, Atwal, H, de la Mata, AP, Harynuk, J & Case, RJ 2016, 'Indole-3-Acetic Acid Is Produced by Emiliania huxleyi Coccolith-Bearing Cells and Triggers a Physiological Response in Bald Cells', FRONTIERS IN MICROBIOLOGY, vol. 7.
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Laiolo, L, McInnes, AS, Matear, R & Doblin, MA 2016, 'Key Drivers of Seasonal Plankton Dynamics in Cyclonic and Anticyclonic Eddies off East Australia', Frontiers in Marine Science, vol. 3, no. 155, pp. 1-14.
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Lee, H, Golicz, AA, Bayer, PE, Jiao, Y, Tang, H, Paterson, AH, Sablok, G, Krishnaraj, RR, Chan, C-KK, Batley, J, Kendrick, GA, Larkum, AWD, Ralph, PJ & Edwards, D 2016, 'The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri)', PLANT PHYSIOLOGY, vol. 172, no. 1, pp. 272-283.
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Lepere, C, Ostrowski, M, Hartmann, M, Zubkov, MV & Scanlan, DJ 2016, 'In situ associations between marine photosynthetic picoeukaryotes and potential parasites - a role for fungi?', ENVIRONMENTAL MICROBIOLOGY REPORTS, vol. 8, no. 4, pp. 445-451.
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Lichtenberg, M, Larkum, AWD & Kuehl, M 2016, 'Photosynthetic Acclimation of Symbiodinium in hospite Depends on Vertical Position in the Tissue of the Scleractinian Coral Montastrea curta', FRONTIERS IN MICROBIOLOGY, vol. 7.
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Matthews, JL, Sproles, AE, Oakley, CA, Grossman, AR, Weis, VM & Davy, SK 2016, 'Menthol-induced bleaching rapidly and effectively provides experimental aposymbiotic sea anemones (Aiptasia sp.) for symbiosis investigations', JOURNAL OF EXPERIMENTAL BIOLOGY, vol. 219, no. 3, pp. 306-310.
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Matthijs, M, Fabris, M, Broos, S, Vyverman, W & Goossens, A 2016, 'Profiling of the Early Nitrogen Stress Response in the Diatom Phaeodactylum Tricornutum Reveals a Novel Family of RING-Domain Transcription Factors', Plant Physiology, vol. 170, no. 1, pp. 489-498.
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Mayers, TJ, Bramucci, AR, Yakimovich, KM & Case, RJ 2016, 'A Bacterial Pathogen Displaying Temperature-Enhanced Virulence of the Microalga Emiliania huxleyi', FRONTIERS IN MICROBIOLOGY, vol. 7.
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Mazard, S, Penesyan, A, Ostrowski, M, Paulsen, IT & Egan, S 2016, 'Tiny Microbes with a Big Impact: The Role of Cyanobacteria and Their Metabolites in Shaping Our Future', MARINE DRUGS, vol. 14, no. 5.
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McCauley, JI, Meyer, BJ, Winberg, PC & Skropeta, D 2016, 'Parameters affecting the analytical profile of fatty acids in the macroalgal genus Ulva', FOOD CHEMISTRY, vol. 209, pp. 332-340.
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McElroy, D, Doblin, MA, Murphy, R, Hochuli, D & Coleman, R 2016, 'A limited legacy effect of copper in marine biofilms', Marine Pollution Bulletin, vol. 109, no. 1, pp. 117-127.
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Messer, LF, Mahaffey, C, Robinson, CM, Jeffries, TC, Baker, KG, Bibiloni Isaksson, J, Ostrowski, M, Doblin, MA, Brown, MV & Seymour, JR 2016, 'High levels of heterogeneity in diazotroph diversity and activity within a putative hotspot for marine nitrogen fixation.', The ISME journal, vol. 10, pp. 1499-1513.
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Mongin, M, Baird, ME, Tilbrook, B, Matear, RJ, Lenton, A, Herzfeld, M, Wild-Allen, K, Skerratt, J, Margvelashvili, N, Robson, BJ, Duarte, CM, Gustafsson, MS, Ralph, PJ & Steven, AD 2016, 'The exposure of the Great Barrier Reef to ocean acidification.', Nature Communications, vol. 7, pp. 1-8.
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Murray, SA, Suggett, DJ, Seymour, JR, Doblin, M, Kohli, GS, Fabris, M & Ralph, PJ 2016, 'Unravelling the functional genetics of dinoflagellates: a review of approaches and opportunities', Perspectives in Phycology, vol. 3, no. 1, pp. 37-52.
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Orata, FD, Rosana, ARR, Xu, Y, Simkus, DN, Bramucci, AR, Boucher, Y & Case, RJ 2016, 'Draft genome sequences of four bacterial strains isolated from a polymicrobial culture of naked (N-Type) Emiliania huxleyi CCMP1516', Genome Announcements, vol. 4, no. 4.
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Pernice, M, Sinutok, S, Sablok, G, Commault, A, Schliep, M, Macreadie, P, Rasheed, M & Ralph, P 2016, 'Molecular physiology reveals ammonium uptake and related gene expression in the seagrass Zostera muelleri', Marine Environmental Research.
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Petrou, K, Kranz, SA, Trimborn, S, Hassler, CS, Ameijeiras, SB, Sackett, O, Ralph, PJ & Davidson, AT 2016, 'Southern Ocean phytoplankton physiology in a changing climate', JOURNAL OF PLANT PHYSIOLOGY, vol. 203, pp. 135-150.
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Pitt, FD, Millard, A, Ostrowski, M, Dervish, S, Mazard, S, Paulsen, IT, Zubkov, MV & Scanlan, DJ 2016, 'A Sample-to-Sequence Protocol for Genus Targeted Transcriptomic Profiling: Application to Marine Synechococcus', FRONTIERS IN MICROBIOLOGY, vol. 7.
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R Marcelino, V, Cremen, MCM, Jackson, CJ, Larkum, AAW & Verbruggen, H 2016, 'Evolutionary Dynamics of Chloroplast Genomes in Low Light: A Case Study of the Endolithic Green Alga Ostreobium quekettii.', Genome biology and evolution, vol. 8, no. 9, pp. 2939-2951.
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Raina, J, Tapiolas, D, Motti, CA, Foret, S, Seemann, T, Tebben, J, Willis, BL & Bourne, DG 2016, 'Isolation of an antimicrobial compoundproduced by bacteria associated withreef-building corals', PeerJ, vol. 4, pp. 1-20.
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Rehman, AU, Szabó, M, Deák, Z, Sass, L, Larkum, A, Ralph, P & Vass, I 2016, 'Symbiodinium sp. cells produce light-induced intra- and extracellular singlet oxygen, which mediates photodamage of the photosynthetic apparatus and has the potential to interact with the animal host in coral symbiosis.', The New phytologist, vol. 212, pp. 472-484.
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Rhodes, L, Harwood, T, Smith, K, Argyle, P & Munday, R 2016, 'Corrigendum to ‘Production of ciguatoxin and maitotoxin by strains of Gambierdiscus australes, G. pacificus and G. polynesiensis (Dinophyceae) isolated from Rarotonga, Cook Islands’ [Harmful Algae 39 (2014) 185–190] (S1568988314001449) (10.1016/j.hal.2014.07.018))', Harmful Algae, vol. 55, p. 295.
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Rinke, C, Low, S, Woodcroft, BJ, Raina, J, Skarshewski, A, Le, XH, Butler, MK, Stocker, R, Seymour, JR, Tyson, GW & Hugenholtz, P 2016, 'Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics', PeerJ, vol. 2016, no. 9.
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Rogers, K, Boon, PI, Branigan, S, Duke, NC, Field, CD, Fitzsimons, JA, Kirkman, H, Mackenzie, JR & Saintilan, N 2016, 'The state of legislation and policy protecting Australia's mangrove and salt marsh and their ecosystem services', MARINE POLICY, vol. 72, pp. 139-155.
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Ros, M, Pernice, M, Le Guillou, S, Doblin, MA, Schrameyer, V & Laczka, O 2016, 'Colorimetric detection of caspase 3 activity and reactive oxygen derivatives: Potential early indicators of thermal stress in corals', Journal of Marine Biology, vol. 2016, pp. 1-11.
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Rosana, ARR, Orata, FD, Xu, Y, Simkus, DN, Bramucci, AR, Boucher, Y & Case, RJ 2016, 'Draft genome sequences of seven bacterial strains isolated from a polymicrobial culture of coccolith-bearing (C-Type) Emiliania huxleyi M217', Genome Announcements, vol. 4, no. 4.
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Roy Chowdhury, P, Scott, M, Worden, P, Huntington, P, Hudson, B, Karagiannis, T, Charles, I & Djordjevic, S 2016, 'Genomic islands 1 and 2 play key roles in the evolution of extensively drug-resistant ST235 isolates of Pseudomonas aeruginosa', Open Biology, vol. 6, pp. 1-12.
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Sablok, G, Mudunuri, SB, Edwards, D & Ralph, PJ 2016, 'Chloroplast genomics: Expanding resources for an evolutionary conserved miniature molecule with enigmatic applications', Current Plant Biology, vol. 7-8, pp. 34-38.
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Sablok, G, Pérez-Pulido, AJ, Do, T, Seong, TY, Casimiro-Soriguer, CS, La Porta, N, Ralph, PJ, Squartini, A, Muñoz-Merida, A & Harikrishna, JA 2016, 'PlantFuncSSR: Integrating first and next generation transcriptomics for mining of SSR-functional domains markers', Frontiers in Plant Science, vol. 7, pp. 1-9.
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Sackett, O, Petrou, K, Reedy, B, Hill, R, Doblin, M, Beardall, J, Ralph, P & Heraud, P 2016, 'Snapshot prediction of carbon productivity, carbon and protein content in a Southern Ocean diatom using FTIR spectroscopy.', The ISME journal, vol. 10, pp. 416-426.
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Schneider, A, Steinberger, I, Herdean, A, Gandini, C, Eisenhut, M, Kurz, S, Morper, A, Hoecker, N, Ruehle, T, Labs, M, Fluegge, U-I, Geimer, S, Schmidt, SB, Husted, S, Weber, APM, Spetea, C & Leister, D 2016, 'The Evolutionarily Conserved Protein PHOTOSYNTHESIS AFFECTED MUTANT71 Is Required for Efficient Manganese Uptake at the Thylakoid Membrane in Arabidopsis', PLANT CELL, vol. 28, no. 4, pp. 892-910.
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Schrameyer, V, Kraemer, W, Hill, R, Jeans, J, Larkum, AWD, Bischof, K, Campbell, DA & Ralph, PJ 2016, 'Under high light stress two Indo-Pacific coral species display differential photodamage and photorepair dynamics', MARINE BIOLOGY, vol. 163, no. 8.
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Siboni, N, Balaraju, V, Carney, R, Labbate, M & Seymour, JR 2016, 'Spatiotemporal Dynamics of Vibrio spp. within the Sydny harbour Estuary', FRONTIERS IN MICROBIOLOGY, vol. 7.
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Signal, B, Gloss, BS & Dinger, ME 2016, 'Computational approaches for functional prediction and characterisation of long noncoding RNAs', Trends in Genetics, vol. 32, pp. 620-637.

Signal, B, Gloss, BS, Dinger, ME & Mercer, TR 2016, 'Machine-learning annotation of human splicing branchpoints', BioRxiv, pp. 094003-094003.

Slavov, C, Schrameyer, V, Reus, M, Ralph, PJ, Hill, R, Buechel, C, Larkum, AWD & Holzwarth, AR 2016, '"Super-quenching" state protects Symbiodinium from thermal stress - Implications for coral bleaching', BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, vol. 1857, no. 6, pp. 840-847.
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Smith, SR, Gle, C, Abbriano, RM, Traller, JC, Davis, A, Trentacoste, E, Vernet, M, Allen, AE & Hildebrand, M 2016, 'Transcript level coordination of carbon pathways during silicon starvation-induced lipid accumulation in the diatom Thalassiosira pseudonana', NEW PHYTOLOGIST, vol. 210, no. 3, pp. 890-904.
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Sutherland, DL, Montemezzani, V, Mehrabadi, A & Craggs, RJ 2016, 'Winter-time CO2 addition in high rate algal mesocosms for enhanced microalgal performance', WATER RESEARCH, vol. 89, pp. 301-308.
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ten Hoopen, P, Amid, C, Buttigieg, PL, Pafilis, E, Bravakos, P, Cerdeno-Tarraga, AM, Gibson, R, Kahlke, T, Legaki, A, Murthy, KN, Papastefanou, G, Pereira, E, Rossello, M, Toribio, AL & Cochrane, G 2016, 'Value, but high costs in post-deposition data curation', DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.
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Tran, N-AT, Padula, MP, Evenhuis, CR, Commault, AS, Ralph, PJ & Tamburic, B 2016, 'Proteomic and biophysical analyses reveal a metabolic shift in nitrogen deprived Nannochloropsis oculata', ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS, vol. 19, pp. 1-11.
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Varkey, D, Mazard, S, Ostrowski, M, Tetu, SG, Haynes, P & Paulsen, IT 2016, 'Effects of low temperature on tropical and temperate isolates of marine Synechococcus', ISME JOURNAL, vol. 10, no. 5, pp. 1252-1263.
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Wangpraseurt, D, Pernice, M, Guagliardo, P, Kilburn, MR, Clode, PL, Polerecky, L & Kuehl, M 2016, 'Light microenvironment and single-cell gradients of carbon fixation in tissues of symbiont-bearing corals', ISME JOURNAL, vol. 10, no. 3, pp. 788-792.
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Watanabe, S, Kuzhiumparambil, U, Winiarski, Z & Fu, S 2016, 'Biotransformation of synthetic cannabinoids JWH-018, JWH-073 and AM2201 by Cunninghamella elegans', Forensic Science International, vol. 261, pp. 33-42.
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Watanabe, S, Kuzhiumparambil, U, Winiarski, Z & Fu, S 2016, 'Data on individual metabolites of synthetic cannabinoids JWH-018, JWH-073 and AM2201 by Cunninghamella elegans', Data in Brief, vol. 7, pp. 332-340.
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Williamson, A, Hjerde, E & Kahlke, T 2016, 'Analysis of the distribution and evolution of the ATP-dependent DNA ligases of bacteria delineates a distinct phylogenetic group 'Lig E'', MOLECULAR MICROBIOLOGY, vol. 99, no. 2, pp. 274-290.
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Wong, MYL, Uppaluri, C, Medina, A, Seymour, J & Buston, PM 2016, 'The four elements of within-group conflict in animal societies: an experimental test using the clown anemonefish, Amphiprion percula', BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY, vol. 70, no. 9, pp. 1467-1475.
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Zavrel, T, Cerveny, J, Knoop, H & Steuer, R 2016, 'Optimizing cyanobacterial product synthesis: Meeting the challenges', BIOENGINEERED, vol. 7, no. 6, pp. 490-496.
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Zavrel, T, Knoop, H, Steuer, R, Jones, PR, Cerveny, J & Trtilek, M 2016, 'A quantitative evaluation of ethylene production in the recombinant cyanobacterium Synechocystis sp PCC 6803 harboring the ethylene-forming enzyme by membrane inlet mass spectrometry', BIORESOURCE TECHNOLOGY, vol. 202, pp. 142-151.
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Zhu, Y, Ishizaka, J, Tripathy, SC, Wang, S, Mino, Y, Matsuno, T & Suggett, DJ 2016, 'Variation of the photosynthetic electron transfer rate and electron requirement for daily net carbon fixation in Ariake Bay, Japan', Journal of Oceanography, vol. 72, no. 5, pp. 761-776.
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Conferences

Craggs, RJ, Park, J, Sutherland, DL & Heubeck, S 2016, 'Enhanced Pond Systems for Dairy farm effluent treatment.', BOPRC and DairyNZ workshop and site visit to demonstration of fish feed from dairy farm effluent.

Hawes, RJ, Park, J, Sutherland, DL & Heubeck, S 2016, 'Cambridge Enhanced Pond System Trial', Workshop on pond performance with Tauranga CCC.

Park, J, Craggs, RJ, Sutherland, DL & Heubeck, S 2016, 'Economic construction and operation of hectare-scale High Rate Algal Pond systems', 11th IWA Specialist Group Conference and workshop on Wastewater Pond Technology, Leeds, UK.

Sutherland, DL 2016, 'Summary of the impacts of proposed Waiau Enhancement Project on the periphyton and macrophytes, including rare and threatened species, in Lakes Te Anau and Manapouri', Waiau Enhancement.

Trojak, M, Safranek, D, Hrabec, J, Salagovic, J, Romanovska, F & Cerveny, J 2016, 'E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria', COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY (CMSB 2016), 14th International Conference on Computational Methods in Systems Biology (CMSB), SPRINGER INTERNATIONAL PUBLISHING AG, Univ Cambridge, Comp Lab, Cambridge, ENGLAND, pp. 316-322.
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Vlachynska, A, Cerveny, J, Cmiel, V & Turecek, T 2016, 'Automatic Image-Based Method for Quantitative Analysis of Photosynthetic Cell Cultures', Hybrid Artificial Intelligent Systems, 11th International Conference on Hybrid Artificial Intelligence Systems (HAIS), SPRINGER-VERLAG BERLIN, Seville, SPAIN, pp. 402-413.
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Reports

Sutherland, DL 2016, Visual survey of the benthic habitat underneath the salmon farms in a hydro-power network., Christchurch, New Zealand.

Sutherland, DL & Burton, T 2016, Ecological assessment of 5 Canterbury lakes using LakeSPI and weed surveillance in 23 waterbodies, Christchurch, New Zealand.

Sutherland, DL & Craggs, R 2016, Filamentous algal nutrient scrubbers for treatment of diffuse nutrient pollution, Christchurch, New Zealand.

Sutherland, DL & James, M 2016, Enhancement package for the Manapouri Power Scheme - effects on aquatic biological communities, Christchurch, NZ.

Sutherland, DL & Taumoepeau, A 2016, Macrophyte monitoring in Waituna Lagoon - summer 2016, Christchurch, New Zealand.

Wilkinson, SJ, Stoller, P, Ralph, P & Hamdorf, B UTS 2016, Feasibility of Algae Building Technology in Sydney, Feasibility of Algae Building Technology in Sydney, no. 1, pp. 1-56, Sydney Australia.

Other

McInnes, AS, Messer, LF, Laiolo, L, Laverock, B, Laczka, O, Brown, M, Seymour, JR & Doblin, MA 2016, 'Microbial utilization of nitrogen in cold core eddies: size does matter'.
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