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Publications

Books

Hoppenrath, M, Murray, SA, Chomérat, N & Horiguchi, T 2014, Marine benthic dinoflagellates - unveiling their worldwide biodiversity, 1, Senckenberg, Stuttgart.
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Chapters

Geider, RJ, Moore, CM & Suggett, DJ 2014, 'Ecology of marine phytoplankton' in Monson, RK (ed), Ecology and the Environment, Springer, New York, pp. 483-531.
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Journal articles

Ajani, PA, Allen, AP, Ingleton, T & Armand, L 2014, 'A decadal decline in relative abundance and a shift in microphytoplankton composition at a long-term coastal station off southeast Australia', LIMNOLOGY AND OCEANOGRAPHY, vol. 59, no. 2, pp. 519-531.
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Ajani, PA, Allen, AP, Ingleton, T & Armand, L 2014, 'Erratum: A decadal decline in relative abundance and a shift in phytoplankton composition at a long-term coastal station off southeast Australia', Limnology and Oceanography, vol. 59, no. 6, pp. 2240-2242.
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Al-Najjar, MAA, Ramette, A, Kuhl, M, Hamza, W, Klatt, JM & Polerecky, L 2014, 'Spatial patterns and links between microbial community composition and function in cyanobacterial mats', FRONTIERS IN MICROBIOLOGY, vol. 5.
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Ashworth, J, Bernard, B, Reynolds, S, Plaisier, CL, Shmulevich, I & Baliga, NS 2014, 'Structure-based predictions broadly link transcription factor mutations to gene expression changes in cancers.', Nucleic Acids Research, vol. 42, no. 21, pp. 12973-12983.
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Ashworth, J, Plaisier, CL, Lo, FY, Reiss, DJ & Baliga, NS 2014, 'Correction: Inference of expanded Lrp-like feast/famine transcription factor targets in a non-model organism using protein structure-based prediction', PLoS ONE, vol. 9, no. 11.
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Ashworth, J, Plaisier, CL, Lo, FY, Reiss, DJ & Baliga, NS 2014, 'Inference of Expanded Lrp-Like Feast/Famine Transcription Factor Targets in a Non-Model Organism Using Protein Structure-Based Prediction', PLOS ONE, vol. 9, no. 9.
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Barnes, MK, Tilstone, GH, Smyth, TJ, Suggett, DJ, Astoreca, R, Lancelot, C & Kromkamp, JC 2014, 'Absorption-based algorithm of primary production for total and size-fractionated phytoplankton in coastal waters', Marine Ecology Progress Series, vol. 504, pp. 73-89.
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Barraza, V, Grings, F, Ferrazzoli, P, Huete, A, Restrepo-Coupe, N, Beringer, J, Van Gorsel, E & Karszenbaum, H 2014, 'Behavior of multitemporal and multisensor passive microwave indices in Southern Hemisphere ecosystems', Journal of Geophysical Research G: Biogeosciences, vol. 119, no. 12, pp. 2231-2244.
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Behrendt, L, Nielsen, J, Sorensen, SJ, Larkum, A, Winther, JR & Kuhl, M 2014, 'Rapid TaqMan-based quantification of chlorophyll d-containing cyanobacteria in the genus Acaryochloris', Applied and Environmental Microbiology, vol. 80, no. 10, pp. 3244-3249.
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Brodersen, KE, Lichtenberg, M, Ralph, PJ, Kuhl, M & Wangpraseurt, D 2014, 'Radiative energy budget reveals high photosynthetic efficiency in symbiont-bearing corals', Journal of the Royal Society Interface, vol. 11, no. 93.
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Brodersen, KE, Nielsen, DA, Ralph, PJ & Kuhl, M 2014, 'A split flow chamber with artificial sediment to examine the below-ground microenvironment of aquatic macrophytes', MARINE BIOLOGY, vol. 161, no. 12, pp. 2921-2930.
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Brodie, J, Williamson, CJ, Smale, D, Kamenos, KA, Mieszkowska, N, Santos, R, Cunliffe, M, Steinke, M, Yesson, C, Anderson, KM, Asnaghi, V, Brownlee C, Burdett, HL, Burrows, MT, Collins, S, Donahue, PJC, Harvey, B, Foggo, A, Noisette, F, Nunes, J, Ragazzola, F, Raven, JA, Schmidt, DN, Suggett, DJ, Teichberg, M & Hall-Spencer, JM 2014, 'The future of the northeast Atlantic benthic flora in a high CO2 world', Ecology & Evolution, vol. 4, no. 13, pp. 2787-2798.
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Brown, MV, Ostrowski, M, Grzymski, JJ & Lauro, FM 2014, 'A trait based perspective on the biogeography of common and abundant marine bacterioplankton clades', MARINE GENOMICS, vol. 15, pp. 17-28.
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Brown, SP, Mead, AJ, Forgan, DH, Raven, JA & Cockell, CS 2014, 'Photosynthetic potential of planets in 3 : 2 spin-orbit resonances', International Journal of Astrobiology, vol. 13, no. 4, pp. 279-289.
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Cavanagh, JP, Hjerde, E, Holden, MTG, Kahlke, T, Klingenberg, C, Flaegstad, T, Parkhill, J, Bentley, SD & Sollid, JUE 2014, 'Whole-genome sequencing reveals clonal expansion of multiresistant Staphylococcus haemolyticus in European hospitals', JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, vol. 69, no. 11, pp. 2920-2927.
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Christoffersen, B, Restrepo Coupe, N, Arain, MA, Baker, I, Cestaro, BP, Ciais, P, Fisher, JB, Galbraith, D, Guan, X, Gulden, L, van den Hurk, B, Ichii, K, Imbuzeiro, H, Jain, A, Levine, N, Miguez-Macho, G, Poulter, B, Roberti, DR, Sakaguchi, K, Sahoo, A, Schaefer, K, Shi, M, Verbeeck, H, Yang, Z, Araújo, AC, Kruijt, B, Manzi, AO, da Rocha, HR, von Randow, C, Muza, MN, Borak, JS, Costa, MH, de Goncalves, LG, Zeng, X & Saleska, SR 2014, 'Mechanisms of water supply and vegetation demand govern the seasonality and magnitude of evapotranspiration in Amazonia and Cerrado', Agricultural and Forest Meteorology, vol. 191, pp. 33-50.
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Commault, AS, Lear, G & Weld, RJ 2014, 'Comment on microbial community composition is unaffected by anode potential', Environmental science & technology, vol. 48, pp. 14851-14852.

Commault, AS, Lear, G, Novis, P & Weld, RJ 2014, 'Photosynthetic biocathode enhances the power output of a sediment-type microbial fuel cell', New Zealand Journal of Botany, vol. 52, pp. 48-59.
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Craggs, R, Park, J, Heubeck, S & Sutherland, D 2014, 'Biological Enhancements to improve the performance of agricultural effluent treatment ponds', Freshwater and Estuaries, no. November 2014.

Craggs, R, Park, J, Heubeck, S & Sutherland, D 2014, 'Biological Enhancements to improve the performance of agricultural effluent treatment ponds', Freshwater and Estuaries, no. November 2014.

Craggs, R, Park, J, Heubeck, S & Sutherland, D 2014, 'High rate algal pond systems for low-energy wastewater treatment, nutrient recovery and energy production', NEW ZEALAND JOURNAL OF BOTANY, vol. 52, no. 1, pp. 60-73.
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Darling, AE, McKinnon, J, Santos, J, Charles, IG, Roy Chowdhury, P, Djordjevic, S & Worden, P 2014, 'A draft genome of Escherichia coli sequence type 127 strain 2009-46.', Gut Pathogens, vol. Sept 1, no. 6, pp. 32-32.
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Darling, AE, Worden, PJ, Chapman, T, Roy Chowdhury, P, Charles, IG & Djordjevic, SP 2014, 'The genome of Clostridium difficile 5.3', Gut Pathogens, vol. 6, no. 4.
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Everett, J, Baird, ME, Roughan, M, Suthers, I & Doblin, MA 2014, 'Relative impact of seasonal and oceanographic drivers on surface chlorophyll a along a Western Boundary Current', Progress in Oceanography, vol. 120, pp. 340-351.
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Fabris, M, Matthijs, M, Carbonelle, S, Moses, T, Pollier, J, Dasseville, R, Baart, GJE, Vyverman, W & Goossens, A 2014, 'Tracking the sterol biosynthesis pathway of the diatom Phaeodactylum tricornutum', New Phytologist, vol. 204, no. 3, pp. 521-535.
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Fanesi, A, Raven, JA & Giordano, M 2014, 'Growth rate affects the responses of the green alga Tetraselmis suecica to external perturbations.', Plant, Cell and Environment, vol. 37, no. 2, pp. 512-519.
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Farrell, H, Gentien, P, Fernand, L, Lazure, P, Lunven, M, Youenou, A, Reguera, B & Raine, R 2014, 'Vertical and horizontal controls of a haptophyte thin layer in the Bay of Biscay, France', Deep Sea Research Part II: Topical Studies in Oceanography, vol. 101, pp. 80-94.
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Farrell, H, Velo-Suarez, L, Reguera, B & Raine, R 2014, 'Phased cell division, specific division rates and other biological observations of Dinophysis populations in sub-surface layers off the south coast of Ireland', Deep Sea Research Part II: Topical Studies in Oceanography, vol. 101, pp. 249-254.
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Flores-Molina, MR, Thomas, D, Lovazzano, C, Núñez, A, Zapata, J, Kumar, M, Correa, JA & Contreras-Porcia, L 2014, 'Desiccation stress in intertidal seaweeds: Effects on morphology, antioxidant responses and photosynthetic performance', Aquatic Botany, vol. 113, pp. 90-99.
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Fu, S, Luong, S, Pham, A, Charlton, N & Kuzhiumparambil, U 2014, 'Bioanalysis of urine samples after manipulation by oxidizing chemicals: technical considerations', BIOANALYSIS, vol. 6, no. 11, pp. 1543-1561.
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Garren, M, Son, K, Raina, J, Rusconi, R, Menolascina, F, Shapiro, H, Tout, JA, Bourne, DG, Seymour, JR & Stocker, R 2014, 'A bacterial pathogen uses dimethylsulfoniopropionate as a cue to target heat-stressed corals', The ISME Journal, vol. 8, pp. 999-1007.
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Giordano, M & Raven, JA 2014, 'Nitrogen and sulfur assimilation in plants and algae', Aquatic Botany, vol. 118, pp. 45-61.
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Gustafsson, MSM, Baird, ME & Ralph, PJ 2014, 'Modeling photoinhibition-driven bleaching in Scleractinian coral as a function of light, temperature, and heterotrophy', LIMNOLOGY AND OCEANOGRAPHY, vol. 59, no. 2, pp. 603-622.
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Hartmann, M, Gomez-Pereira, P, Grob, C, Ostrowski, M, Scanlan, DJ & Zubkov, MV 2014, 'Efficient CO2 fixation by surface Prochlorococcus in the Atlantic Ocean', ISME JOURNAL, vol. 8, no. 11, pp. 2280-2289.
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Hassler, CS, Ridgway, K, Bowie, AR, Butler, EC, Clementson, L, Doblin, MA, Davies, DM, Law, C, Ralph, PJ, van der Merwe, P, Watson, R & Ellwood, M 2014, 'Primary productivity induced by iron and nitrogen in the Tasman Sea - An overview of the PINTS expedition', Marine and Freshwater Research, vol. 65, no. 6, pp. 517-537.
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Henschke, N, Everett, J, Doblin, MA, Pitt, K, Richardson, AJ & Suthers, IM 2014, 'Demography and interannual variability of salp swarms (Thalia democratica)', Marine Biology, vol. 161, no. 1, pp. 149-163.
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Henschke, N, Everett, JD, Doblin, MA, Pitt, KA, Richardson, AJ & Suthers, IM 2014, 'Demography and interannual variability of salp swarms (Thalia democratica)', Marine Biology, vol. 161, no. 1, pp. 149-163.
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Hill, R, Szabo, M, Rehman, A, Vass, I, Ralph, PJ & Larkum, A 2014, 'Inhibition of photosynthetic CO2 fixation in the coral Pocillopora damicornis and its relationship to thermal bleaching', Journal of Experimental Biology, vol. 217, pp. 2150-2162.
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Jeans, J, Szabo, M, Campbell, DA, Larkum, A, Ralph, PJ & Hill, R 2014, 'Thermal bleaching induced changes in photosystem II function not reflected by changes in photosystem II protein content of Stylophora pistillata', Coral Reefs, vol. 33, pp. 131-139.
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John, U, Litaker, RW, Montresor, M, Murray, S, Brosnahan, ML & Anderson, DM 2014, 'Formal Revision of the Alexandrium tamarense Species Complex (Dinophyceae) Taxonomy: The Introduction of Five Species with Emphasis on Molecular-based (rDNA) Classification', PROTIST, vol. 165, no. 6, pp. 779-804.
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John, U, Litaker, W, Montresor, M, Murray, SA, Brosnahan, ML & Anderson, DM 2014, 'Proposal to reject the name Gonyaulax catenella (Alexandrium catenella) (Dinophyceae)', Taxon, vol. 63, no. 4, pp. 932-933.
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Kanazawa, A, Blanchard, GJ, Szabo, M, Ralph, PJ & Kramer, DM 2014, 'The site of regulation of light capture in Symbiodinium: Does the peridinin-chlorophyll a-protein detach to regulate light capture?', Biochimica et Biophysica Acta - Bioenergetics, vol. 1837, no. 8, pp. 1227-1234.
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Keeling, PJ, Burki, F, Wilcox, HM, Allam, B, Allen, EE, Amaral-Zettler, LA, Armbrust, V, Archibald, JM, Bharti, AK, Bell, CJ, Beszteri, B, Bidle, KD, Cameron, CT, Campbell, L, Caron, DA, Cattolico, RA, Collier, JL, Coyne, K, Davy, SK, Deschamps, P, Dyhrman, S, Edvardsen, B, Gates, RD, Gobler, CJ, Greenwood, SJ, Guida, SM, Jacobi, JL, Jakobsen, KS, James, ER, Jenkins, B, John, U, Johnson, MD, Juhl, AR, Kamp, A, Katz, LA, Kiene, R, Kudryavtsev, A, Leander, BS, Lin, S, Lovejoy, C, Lynn, D, Marchetti, A, McManus, G, Nedelcu, AM, Menden-Deuer, S, Miceli, C, Mock, T, Montresor, M, Moran, MA, Murray, SA, Nadathur, G, Nagai, S, Ngam, PB, Palenik, B, Pawlowski, J, Petroni, G, Piganeau, G, Posewitz, MC, Rengefors, K, Romano, G, Rumpho, ME, Rynearson, T, Schilling, KB, Schroeder, DC, Simpson, AG, Slamovits, CH, Smith, DR, Smith, J, Smith, SR, Sosik, HM, Stief, P, Theriot, E, Twary, SN, Umale, PE, Vaulot, D, Wawrik, B, Wheeler, GL, Wilson, WH, Xu, Y, Zingone, A & Worden, AZ 2014, 'The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing', Plos Biology, vol. 12, no. 6.
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Kohli, GS, Murray, SA, Neilan, BA, Rhodes, L, Harwood, T, Smith, KF, Meyer, L, Capper, A, Brett, S & Hallegraeff, GM 2014, 'High abundance of the potentially maitotoxic dinoflagellate Gambierdiscus carpenteri in temperate waters of New South Wales, Australia', Harmful Algae, vol. 39, pp. 134-145.
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Kohli, GS, Neilan, BA, Brown, MV, Hoppenrath, M & Murray, SA 2014, 'Cob gene pyrosequencing enables characterisation of benthic dinoflagellate diversity and biogeography', Environmental Microbiology, vol. 16, no. 2, pp. 467-485.
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Kohli, GS, Papiol, GG, Rhodes, L, Harwood, T, Selwood, A, Jerrett, A, Murray, SA & Neilan, BA 2014, 'A feeding study to probe the uptake of Maitotoxin by snapper (Pagrus auratus)', Harmful Algae, vol. 37, pp. 125-132.
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Kolpen, M, Bjarnsholt, T, Moser, C, Rønne Hansen, C, Rickelt, LF, Kuhl, M, Hempel, C, Pressler, T, Hoiby, N & Østrup Jensen, P 2014, 'Nitric oxide production by polymorphonuclear leukocytes in infected cystic fibrosis sputum consumes oxygen', Clinical and Experimental Immunology, vol. 176, no. 3.
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Kolpen, M, Kuhl, M, Bjarnsholt, T, Moser, C, Hansen, CR, Liengaard, L, Kharazmi, A, Pressler, T, Hoiby, N & Østrup Jensen, P 2014, 'Nitrous Oxide Production in Sputum from Cystic Fibrosis Patients with Chronic Pseudomonas aeruginosa Lung Infection', PLoS One, vol. 9, no. 1, p. e84353.
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Kragh, KN, Alhede, M, Jensen, PO, Moser, C, Scheike, T, Jacobsen, CS, Poulsen, SS, Eickhardt-Sorensen, SR, Trostrup, H, Christoffersen, L, Hougen, H-P, Rickelt, LF, Kuhl, M, Hoiby, N & Bjarnsholt, T 2014, 'Polymorphonuclear Leukocytes Restrict Growth of Pseudomonas aeruginosa in the Lungs of Cystic Fibrosis Patients', INFECTION AND IMMUNITY, vol. 82, no. 11, pp. 4477-4486.
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Kramarsky-Winter, E, Arotsker, L, Rasoulouniriana, D, Siboni, N, Loya, Y & Kushmaro, A 2014, 'The possible role of cyanobacterial filaments in coral black band disease pathology.', Microbial Ecology, vol. 67, no. 1, pp. 177-185.
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Kumar, M, Kumari, P, Reddy, CRK & Jha, B 2014, 'Salinity and Desiccation Induced Oxidative Stress Acclimation in Seaweeds', Advances in Botanical Research, vol. 71, pp. 91-123.
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Kumari, P, Kumar, M, Reddy, CRK & Jha, B 2014, 'Nitrate and Phosphate Regimes Induced Lipidomic and Biochemical Changes in the Intertidal Macroalga Ulva lactuca (Ulvophyceae, Chlorophyta)', Plant and Cell Physiology, vol. 55, no. 1, pp. 52-63.
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Laczka, OF, Labbate, M & Doblin, MA 2014, 'Application of an ELISA-type amperometric assay to the detection of Vibrio species with screenprinted electrodes', Analytical Methods, vol. 6, pp. 2020-2023.
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Laczka, OF, Labbate, M, Seymour, JR, Bourne, DG, Fielder, SS & Doblin, MA 2014, 'Surface Immuno-Functionalisation for the Capture and Detection of Vibrio Species in the Marine Environment: A New Management Tool for Industrial Facilities', PLOS ONE, vol. 9, no. 10.
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Lauro, FM, Senstius, SJ, Cullen, J, Neches, R, Jensen, RM, Brown, MV, Darling, AE, Givskov, M, McDougald, D, Hoeke, R, Ostrowski, M, Philip, GK, Paulsen, IT & Grzymski, JJ 2014, 'The common oceanographer: crowdsourcing the collection of oceanographic data.', PLoS biology, vol. 12, no. 9, pp. e1001947-e1001947.
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Lavery, TJ, Roudnew, B, Seymour, JR, Mitchell, JG, Smetacek, V & Nicol, S 2014, 'Whales sustain fisheries: Blue whales stimulate primary production in the Southern Ocean', Marine Mammal Science, vol. 30, no. 3, pp. 888-904.
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Li, R, Pedersen, KS, Liu, Y, Pedersen, HS, Lægdsmand, M, Rickelt, LF, Kühl, M & Callesen, H 2014, 'Effect of red light on the development and quality of mammalian embryos.', Journal of Assisted Reproduction and Genetics, vol. 31, no. 7, pp. 795-801.
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Liengaard, L, Figueiredo, V, Markfoged, R, Revsbech, NP, Nielsen, LP, Enrich-Prast, A & Kuhl, M 2014, 'Hot moments of N2O transformation and emission in tropical soils from the Pantanal and the Amazon (Brazil)', Soil Biology & Biochemistry, vol. 75, pp. 26-36.
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Line, L, Alhede, M, Kolpen, M, Kuehl, M, Ciofu, O, Bjarnsholt, T, Moser, C, Toyofuku, M, Nomura, N, Hoiby, N & Jensen, PO 2014, 'Physiological levels of nitrate support anoxic growth by denitrification of Pseudomonas aeruginosa at growth rates reported in cystic fibrosis lungs and sputum', FRONTIERS IN MICROBIOLOGY, vol. 5.
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Line, L, Kolpen, M, Alhede, M, Kuhl, M, Bjarnsholt, T, Moser, C, Hoiby, N & Jensen, OP 2014, 'PHYSIOLOGICAL LEVELS OF NITRATE SUPPORT ANOXIC GROWTH OF PSEUDOMONAS AERUGINOSA BY DENITRIFICATION AT GROWTH RATES REPORTED IN CYSTIC FIBROSIS SPUTUM', PEDIATRIC PULMONOLOGY, vol. 49, pp. 336-336.

Lockhart, PJ, Larkum, AWD, Becker, M & Penny, D 2014, 'We are Still Learning About the Nature of Species and Their Evolutionary Relationships', Annals of the Missouri Botanical Garden, vol. 100, no. 1-2, pp. 6-13.
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Lohr, KE, Camp, EF & Manfrino, C 2014, 'First record of the basslet Gramma dejongi outside of Cuba', CORAL REEFS, vol. 33, no. 1, pp. 221-221.
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Lucker, BF, Hall, CC, Zegarac, R & Kramer, DM 2014, 'The environmental photobioreactor (ePBR): An algal culturing platform for simulating dynamic natural environments', ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS, vol. 6, pp. 242-249.
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Ma, X, Huete, A, Yu, Q, Restrepo-Coupe, N, Beringer, J, Hutley, LB, Kanniah, KD, Cleverly, J & Eamus, D 2014, 'Parameterization of an ecosystem light-use-efficiency model for predicting savanna GPP using MODIS EVI', REMOTE SENSING OF ENVIRONMENT, vol. 154, pp. 253-271.
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Macreadie, PI, Baird, ME, Trevathan-Tackett, SM, Larkum, A & Ralph, PJ 2014, 'Quantifying and modelling the carbon sequestration capacity of seagrass meadows - A critical assessment', Marine Pollution Bulletin, vol. 83, pp. 430-439.
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Macreadie, PI, Schliep, MT, Rasheed, M, Chartrand, KM & Ralph, PJ 2014, 'Molecular indicators of chronic seagrass stress: A new era in the management of seagrass ecosystems?', Ecological Indicators, vol. 38, pp. 279-281.
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Mazard, S, Ostrowski, M, Holland, R, Zubkov, MV & Scanlan, DJ 2014, 'Targeted genomics of flow cytometrically sorted cultured and uncultured microbial groups', Methods in Molecular Biology, vol. 1096, pp. 203-212.
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Mazard, S, Ostrowski, M, Holland, R, Zubkov, MV & Scanlan, DJ 2014, 'Targeted genomics of flow cytometrically sorted cultured and uncultured microbial groups', Methods in Molecular Biology, vol. 1096, pp. 203-212.
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Mitra, A, Flynn, KJ, Burkholder, JM, Berge, T, Calbet, A, Raven, JA, Granéli, E, Glibert, PM, Hansen, PJ, Stoecker, DK, Thingstad, F, Tillmann, U, Väge, S, Wilken, S & Zubkov, MV 2014, 'The role of mixotrophic protists in the biological carbon pump', Biogeosciences, vol. 11, no. 4, pp. 995-1005.
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Murray, SA, Hoppenrath, M, Orr, RJ, Bolch, C, John, U, Diwan, R, Yauwenas, R, Harwood, T, de Salas, M, Neilan, B & Hallegraeff, G 2014, 'Alexandrium diversaporum sp. nov., a new non-saxitoxin producing species: Phylogeny, morphology and sxtA genes', Harmful Algae, vol. 31, pp. 54-65.
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Murray, SA, Momigliano, P, Heimann, K & Blair, D 2014, 'Molecular phylogenetics and morphology of Gambierdiscus yasumotoi from tropical eastern Australia', Harmful Algae, vol. 39, pp. 242-252.
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O'Malley-James, JT, Cockell, CS, Greaves, JS & Raven, JA 2014, 'Swansong biospheres II: the final signs of life on terrestrial planets near the end of their habitable lifetimes', INTERNATIONAL JOURNAL OF ASTROBIOLOGY, vol. 13, no. 3, pp. 229-243.
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Pandya-Kumar, N, Shema, R, Kumar, M, Mayzlish-Gati, E, Levy, D, Zemach, H, Belausov, E, Wininger, S, Abu-Abied, M, Kapulnik, Y & Koltai, H 2014, 'Strigolactone analog GR24 triggers changes in PIN2 polarity, vesicle trafficking and actin filament architecture', New Phytologist, vol. 202, no. 4, pp. 1184-1196.
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Peichl, M, Arain, AM, Moore, TR, Brodeur, JJ, Khomik, M, Ullah, S, Restrepo-Coupe, N, McLaren, J & Pejam, MR 2014, 'Carbon and greenhouse gas balances in an age sequence of temperate pine plantations', BIOGEOSCIENCES, vol. 11, no. 19, pp. 5399-5410.
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Perez, PG, Ye, J, Wang, S, Wang, X & Huang, D 2014, 'Analysis of the occurrence and activity of diazotrophic communities in organic and conventional horticultural soils', APPLIED SOIL ECOLOGY, vol. 79, pp. 37-48.
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Pernice, M & Levy, O 2014, 'Novel tools integrating metabolic and gene function to study the impact of the environment on coral symbiosis', Frontiers in Microbiology, vol. 5, pp. 1-6.
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Pernice, M, Simpson, S & Ponton, F 2014, 'Towards an integrated understanding of gut microbiota using insects as model systems', Journal of Insect Physiology, vol. 69, pp. 12-18.
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Petrou, K, Trimborn, S, Kühl, M & Ralph, PJ 2014, 'Desiccation stress in two intertidal beachrock biofilms', Marine Biology, vol. 161, no. 8, pp. 176-1773.
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Petrou, K, Trimborn, S, Rost, B, Ralph, PJ & Hassler, CS 2014, 'The impact of iron limitation on the physiology of the Antarctic diatom Chaetoceros simplex', Marine Biology, vol. 161, pp. 925-937.
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Plaisier, CL, Lo, FY, Ashworth, J, Brooks, AN, Beer, KD, Kaur, A, Pan, M, Reiss, DJ, Facciotti, MT & Baliga, NS 2014, 'Evolution of context dependent regulation by expansion of feast/famine regulatory proteins.', BMC Systems Biology, vol. 8, pp. 1-14.
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Poulton, AJ, Stinchcombe, MC, Achterberg, EP, Bakker, DCE, Dumousseaud, C, Lawson, HE, Lee, GA, Richier, S, Suggett, DJ & Young, JR 2014, 'Coccolithophores on the north-west European shelf: calcification rates and environmental controls', BIOGEOSCIENCES, vol. 11, no. 14, pp. 3919-3940.
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Quek, XC, Thomson, DW, Maag, JLV, Bartonicek, N, Signal, B, Clark, MB, Gloss, BS & Dinger, ME 2014, 'lncRNAdb v2. 0: expanding the reference database for functional long noncoding RNAs', Nucleic acids research, vol. 43, pp. D168-D173.

Raven, J, Beardall, J & Giordano, M 2014, 'Energy costs of carbon dioxide concentration mechanisms in aquatic organisms', Photosynthesis Research, vol. 121, no. 2-Mar, pp. 111-124.
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Raven, JA 2014, 'Speedy small stomata?', JOURNAL OF EXPERIMENTAL BOTANY, vol. 65, no. 6, pp. 1415-1424.
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Raven, JA & Beardall, J 2014, 'CO2 concentrating mechanisms and environmental change', Aquatic Botany, vol. 118, pp. 24-37.
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Raven, JA & Doblin, MA 2014, 'Active water transport in unicellular algae: where, why, and how', JOURNAL OF EXPERIMENTAL BOTANY, vol. 65, no. 22, pp. 6279-6292.
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Raven, JA & Giordano, M 2014, 'Algae', Current Biology, vol. 24, no. 13, pp. R590-R595.
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Rhodes, L, Harwood, T, Smith, K, Argyle, P & Munday, R 2014, 'Production of ciguatoxin and maitotoxin by strains of Gambierdiscus australes, G. pacificus and G. polynesiensis (Dinophyceae) isolated from Rarotonga, Cook Islands', Harmful Algae, vol. 39, pp. 185-190.
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Richier, S, Achterberg, EP, Dumousseaud, C, Poulton, AJ, Suggett, DJ, Tyrrell, T, Zubkov, MV & Moore, CM 2014, 'Phytoplankton responses and associated carbon cycling during shipboard carbonate chemistry manipulation experiments conducted around Northwest European shelf seas', BIOGEOSCIENCES, vol. 11, no. 17, pp. 4733-4752.
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Rickelt, LF, Askaer, L, Walpersdorf, E, Elberling, B, Glud, RN & Kuehl, M 2014, 'An Optode Sensor Array for Long-Term In Situ Oxygen Measurements in Soil and Sediment (vol 42, pg 1267, 2013)', JOURNAL OF ENVIRONMENTAL QUALITY, vol. 43, no. 5, pp. 1821-1821.
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Robinson, C, Suggett, DJ, Cherukuru, N, Ralph, PJ & Doblin, MA 2014, 'Performance of Fast Repetition Rate fluorometry based estimates of primary productivity in coastal waters', JOURNAL OF MARINE SYSTEMS, vol. 139, pp. 299-310.
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Roudnew, B, Lavery, TJ, Seymour, JR, Jeffries, TC & Mitchell, JG 2014, 'Variability in Bacteria and Virus-Like Particle Abundances During Purging of Unconfined Aquifers', Groundwater, vol. 52, no. 1, pp. 118-124.
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Sackett, O, Armand, L, Beardall, J, Hill, R, Doblin, M, Connelly, C, Howes, J, Stuart, B, Ralph, P & Heraud, P 2014, 'Taxon-specific responses of Southern Ocean diatoms to Fe enrichment revealed by synchrotron radiation FTIR microspectroscopy', Biogeosciences Discussions, vol. 11, no. 20, pp. 5795-5808.
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Sánchez-Baracaldo, P, Ridgwell, A & Raven, JA 2014, 'A neoproterozoic transition in the marine nitrogen cycle.', Current Biology, vol. 24, no. 6, pp. 652-657.
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Schrameyer, V, Wangpraseurt, D, Hill, R, Kuehl, M, Larkum, AWD & Ralph, PJ 2014, 'Light Respiratory Processes and Gross Photosynthesis in Two Scleractinian Corals', PLOS ONE, vol. 9, no. 10.
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Seymour, JR 2014, 'A sea of microbes: the diversity and activity of marine microorganisms', Microbiology Australia, vol. 35, no. 4, pp. 183-183.
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Shilova, IN, Robidart, JC, Tripp, HJ, Turk-Kubo, K, Wawrik, B, Post, AF, Thompson, AW, Ward, B, Hollibaugh, JT, Millard, A, Ostrowski, M, Scanlan, DJ, Paerl, RW, Stuart, R & Zehr, JP 2014, 'A microarray for assessing transcription from pelagic marine microbial taxa', ISME JOURNAL, vol. 8, no. 7, pp. 1476-1491.
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Siboni, N, Abrego, D, Motti, CA, Tebben, J & Harder, T 2014, 'Gene expression patterns during the early stages of chemically induced larval metamorphosis and settlement of the coral Acropora millepora.', PLoS ONE, vol. 9, no. 3, pp. 1-9.
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Sinutok, S, Hill, R, Kuhl, M, Doblin, MA & Ralph, PJ 2014, 'Ocean acidification and warming alter photosynthesis and calcification of the symbiont-bearing foraminifera Marginopora vertebralis', Marine Biology, vol. 161, pp. 2143-2154.
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Stittrich, A-B, Lehman, A, Bodian, DL, Ashworth, J, Zong, Z, Li, H, Lam, P, Khromykh, A, Iyer, RK, Vockley, JG, Baveja, R, Silva, ES, Dixon, J, Leon, EL, Solomon, BD, Glusman, G, Niederhuber, JE, Roach, JC & Patel, MS 2014, 'Mutations in NOTCH1 Cause Adams-Oliver Syndrome', AMERICAN JOURNAL OF HUMAN GENETICS, vol. 95, no. 3, pp. 275-284.
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Sulpice, R, Ishihara, H, Schlereth, A, Cawthray, GR, Encke, B, Giavalisco, P, Ivakov, A, Arrivault, S, Jost, R, Krohn, N, Kuo, J, Laliberté, E, Pearse, SJ, Raven, JA, Scheible, W-R, Teste, F, Veneklaas, EJ, Stitt, M & Lambers, H 2014, 'Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species.', Plant, Cell and Environment, vol. 37, no. 6, pp. 1276-1298.
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Sutherland, DL, Howard-Williams, C, Turnbull, MH, Broady, PA & Craggs, RJ 2014, 'Seasonal variation in light utilisation, biomass production and nutrient removal by wastewater microalgae in a full-scale high-rate algal pond', JOURNAL OF APPLIED PHYCOLOGY, vol. 26, no. 3, pp. 1317-1329.
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Sutherland, DL, Turnbull, MH & Craggs, RJ 2014, 'Increased pond depth improves algal productivity and nutrient removal in wastewater treatment high rate algal ponds', WATER RESEARCH, vol. 53, pp. 271-281.
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Sutherland, DL, Turnbull, MH, Broady, PA & Craggs, RJ 2014, 'Effects of two different nutrient loads on microalgal production, nutrient removal and photosynthetic efficiency in pilot-scale wastewater high rate algal ponds', WATER RESEARCH, vol. 66, pp. 53-62.
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Sutherland, DL, Turnbull, MH, Broady, PA & Craggs, RJ 2014, 'Wastewater microalgal production, nutrient removal and physiological adaptation in response to changes in mixing frequency', WATER RESEARCH, vol. 61, pp. 130-140.
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Sutton, AT, Read, E, Maniego, AR, Thevarajah, JJ, Marty, J-D, Destarac, M, Gaborieau, M & Castignolles, P 2014, 'Purity of double hydrophilic block copolymers revealed by capillary electrophoresis in the critical conditions', JOURNAL OF CHROMATOGRAPHY A, vol. 1372, pp. 187-195.
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Szabo, M, Parker, KB, Guruprasad, S, Kuzhiumparambil, U, Lilley, RM, Tamburic, B, Schliep, MT, Larkum, A, Schreiber, U, Raven, J & Ralph, PJ 2014, 'Photosynthetic acclimation of Nannochloropsis oculata investigated by multi-wavelength chlorophyll fluorescence analysis', Bioresource Technology, vol. 167, pp. 521-529.
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Szabo, M, Wangpraseurt, D, Tamburic, B, Larkum, A, Schreiber, U, Suggett, DJ, Kühl, M & Ralph, PJ 2014, 'Effective light absorption and absolute electron transport rates in the coral Pocillopora damicornis', Plant Physiology and Biochemistry, vol. 83, pp. 159-167.
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Tamburic, B, Guruprasad, S, Radford, DT, Szabo, M, Lilley, R, Larkum, A, Franklin, J, Kramer, D, Blackburn, S, Raven, J, Schliep, MT & Ralph, PJ 2014, 'The effect of diel temperature and light cycles on the growth of Nannochloropsis oculata in a photobioreactor matrix', PLoS One, vol. 9, no. 1, p. e86047.
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Tamburic, B, Szabo, M, Tran, A, Larkum, A, Suggett, DJ & Ralph, PJ 2014, 'Action spectra of oxygen production and chlorophyll a fluorescence in the green microalga Nannochloropsis oculata', Bioresource Technology, vol. 169, pp. 320-327.
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Thyme, SB, Boissel, SJS, Quadri, SA, Nolan, T, Baker, DA, Park, RU, Kusak, L, Ashworth, J & Baker, D 2014, 'Reprogramming homing endonuclease specificity through computational design and directed evolution', NUCLEIC ACIDS RESEARCH, vol. 42, no. 4, pp. 2564-2576.
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Torres, MA, Ritchie, RJ, Lilley, R, Grillet, C & Larkum, AWD 2014, 'Measurement of photosynthesis and photosynthetic efficiency in two diatoms', New Zealand Journal of Botany, vol. 52, no. 1, pp. 6-27.
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Tout, JA, Jeffries, TC, Webster, NS, Stocker, R, Ralph, PJ & Seymour, JR 2014, 'Variability in Microbial Community Composition and Function Between Different Niches Within a Coral Reef', Microbial Ecology, vol. 67, pp. 540-552.
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Trevathan-Tackett, SM, Macreadie, PI, Ralph, PJ & Seymour, JR 2014, 'Detachment and flow cytometric quantification of seagrass-associated bacteria', Journal of Microbiological Methods, vol. 102, pp. 23-25.
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Trolle, D, Spigel, B, Hamilton, DP, Norton, N, Sutherland, D, Plew, D & Allan, MG 2014, 'Application of a Three-Dimensional Water Quality Model as a Decision Support Tool for the Management of Land-Use Changes in the Catchment of an Oligotrophic Lake', ENVIRONMENTAL MANAGEMENT, vol. 54, no. 3, pp. 479-493.
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Ung, AT, Williams, SG, Angeloski, A, Ashmore, J, Kuzhiumparambil, U, Bhadbhade, M & Bishop, R 2014, 'Formation of 3-azabicyclo[3.3.1]non-3-enes: imino amides vs. imino alkenes', Monatshefte fur Chemie, vol. 145, no. 6, pp. 983-992.
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Wangpraseurt, D, Larkum, A, Franklin, J, Szabo, M, Ralph, PJ & Kuhl, M 2014, 'Lateral light transfer ensures efficient resource distribution in symbiont-bearing corals', Journal of Experimental Biology, vol. 217, pp. 489-498.
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Wangpraseurt, D, Polerecky, L, Larkum, A, Ralph, PJ, Nielsen, DA, Pernice, M & Kuhl, M 2014, 'The in situ light microenvironment of corals', Limnology and Oceanography, vol. 59, no. 3, pp. 917-926.
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Wangpraseurt, D, Tamburic, B, Szabo, M, Suggett, DJ, Ralph, PJ & Kuhl, M 2014, 'Spectral Effects on Symbiodinium Photobiology Studied with a Programmable Light Engine', PLoS One.
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Watanabe, K, Miyoshi, Y, Kubo, F, Onuma, R, Murray, SA & Horiguchi, T 2014, 'Ankistrodinium armigerum sp. nov. (Dinophyceae), a new species of heterotrophic marine sand-dwelling dinoflagellate from Japan and Australia', Phycological Research, vol. 62, no. 2, pp. 125-135.
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Wiese, M, Murray, SA, Alvin, A & Neilan, BA 2014, 'Gene expression and molecular evolution of sxtA4 in a saxitoxin producing dinoflagellate Alexandrium catenella', TOXICON, vol. 92, pp. 102-112.
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Wu, Y, Campbell, DA, Irwin, AJ, Suggett, DJ & Finkel, Z 2014, 'Ocean acidification enhances the growth rate of larger diatoms', Limnology and Oceanography, vol. 59, no. 3, pp. 1027-1034.
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Wu, Y, Jeans, J, Suggett, DJ, Finkel, ZV & Campbell, DA 2014, 'Large centric diatoms allocate more cellular nitrogen to photosynthesis to counter slower RUBISCO turnover rates', Frontiers in Marine Science, vol. 1, pp. 1-11.
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Zhang, D, Glasby, TM, Ralph, PJ & Gribben, PE 2014, 'Mechanisms Influencing the Spread of a Native Marine Alga', PLOS ONE, vol. 9, no. 4.
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Conferences

Ajani, P, Murray, S, Hallegraeff, G, Brett, S, Webster, G & Armand, L 2013, 'Identification and seasonal occurrence of potentially toxic Pseudo-nitzschia diatoms in oyster growing estuaries of New South Wales, Australia', Proc. 9th Int. Conf. Molluscan Shellfish Safety, International Conference of Molluscan Shellfish Safety, United Nations FAO, Sydney Australia, pp. 100-103.
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Ajani, PA, Murray, S, Hallegraeff, G, Brett, S, Webster, G & Armand, L 2014, 'Cryptic and harmful: Molecular analysis of algal species causing amnesic shellfish poisoning in Australian waters', 5th Congress of the International Society for Applied Phycology 2014, Molecular analysis of algal species causing amnesic shellfish poisoning in Australian waters, Sydney.
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Allan, M, Hamilton, D, Spigel, B, Howard-Williams, C & Sutherland, DL 2014, 'Remote sensing of vegetation adjacent to Lake Benmore Ahuriri Arm', 21st Century Watershed Conference, Hamilton.

Craggs, R, Park, J, Heubeck, S & Sutherland, D 2014, 'Wastewater treatment and biofuel production using enhanced anaerobic and algal pond systems', Chemical and Materials Engineering seminar.

Craggs, RJ, Park, J, Heubeck, S & Sutherland, DL 1970, 'Economic construction and operation of hectare-scale wastewater treatment high rate algal pond systems', 5th Congress of the International Society for Applied Phycology.

Craggs, RJ, Park, J, Heubeck, S, Montemezzani, V & Sutherland, DL 2014, 'Biological enhancements to improve the performance of agricultural effluent treatment ponds', 21st Century Watershed Conference, Hamilton, NZ.

Craggs, RJ, Park, J, Sutherland, DL & Heubeck, S 2014, 'Economic Construction and Operation of Hectare-Scale Wastewater Treatment Enhanced Pond Systems', IWA Session, WaterNZ Annual Conference.

Craggs, RJ, Park, J, Sutherland, DL & Heubeck, S 2014, 'Enhancements of wastewater treatment High Rate Algal Ponds', Korean Algae Workshop, Hamilton, NZ.

Craggs, RJ, Park, J, Sutherland, DL & Heubeck, S 2014, 'Enhancements of wastewater treatment High Rate Algal Ponds for biofuel production', Advanced Biofuels Research Network Science Symposium, Rotorua.

Craggs, RJ, Sutherland, DL, Park, J & Heubeck, S 2014, 'Cambridge Wastewater Treatment Plant NIWA Enhanced Pond System Demonstration'.

Craggs, RJ, Sutherland, DL, Park, J & Heubeck, S 2014, 'Wastewater Energy and Nutrient Recovery for Island Communities', 7th Pacific Water Conference, Amercian Samoa.

Farrell, H, Ajani, P, Brett, S, Zammit, A & Murray, S 2013, 'Alexandrium species in New South Wales (NSW) coastal waters: historical distributions and identification of high-risk zones', Proc. 9th Int. Conf. Molluscan Shellfish Safety, International Conference on Molluscan Shellfish Safety, United Nations FAO, Sydney Australia, pp. 107-110.
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Larsson, M, Ajani, P, Rubio, A, McPherson, R, Brett, S, Ralph, P & Doblin, M 2014, 'Long term water quality and phytoplankton dynamics in response to a reduction in point source nutrient deliver.', 16th International Conference on Harmful Algae (ICHA) 2014, Wellington, New Zealand.

Murray, SA, Orr, R & John, U 2014, 'Can evolutionary ecology help us to design better biotoxin detection tools? The case of Alexandrium.', Marine and Freshwater Algae, International Conference on Harmful Algae, Cawthron Institute, Wellington, New Zealand, pp. 30-33.
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Sutherland, D 2014, 'Lakes weeds and recreational impacts', Ashburton Aquatic Park Charitable Trust.

Sutherland, DL, Howard-Williams, C, Turnbull, M, Broady, PA & Craggs, RJ 2014, 'Improvement in light absorption and utilisation by microalgae through addition of carbon dioxide in wastewater treatment high rate algal ponds', 5th Congress of the International Society for Applied Phycology.

Tanner, C, Sukias, J, de Winton, M & Sutherland, DL 2014, 'How much wetland would we need to clean up Te Waihora / Lake Ellesmere', Waihora Ellesmere Trust Conference.

Wangpraseurt, D & Kuhl, M 2014, 'Direct and diffuse light propagation through coral tissue', Optical Interactions with Tissue and Cells XXV; and Terahertz for Biomedical Applications, SPIE, San Francisco.
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Watson, CJ, Coupe, NR & Huete, AR 2013, 'Hyperspectral assessments of condition and species composition of Australian grasslands', Proceedings of the 2013 IEEE International Geoscience & Remote Sensing Symposium, IEEE International Geoscience and Remote Sensing Symposium, IEEE, Melbourne, VIC, Australia, pp. 2770-2773.
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Reports

Ajani, P & Murray, SA 2014, Microalgal Community Composition Assessment in Warringah Lagoons 2013-2014.

Norton, N, Allan, M, Hamilton, D, Horrell, G, Sutherland, D & Meredith, A 2014, Technical Report to support water quality limit settings process in Selwyn Waihora Catchment. Predicting consequences of future scenarios: Te Waihora / Lake Ellesmere, Christchurch.

Roberts, C, Pernice, M & Nicastro, A 2014, Bimonthly Coral Monitoring Report: Dredging Report 6 − Ichthys Nearshore Environmental Monitoring Program., no. 6, pp. 1-294, Sydney.
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Roberts, C, Pernice, M & Nicastro, A 2014, Bimonthly Coral Monitoring Report: Dredging Report 7 − Ichthys Nearshore Environmental Monitoring Program., no. 7, pp. 1-234, Sydney.
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Sutherland, D & Champion, P 2014, Effects of MTAD on lake macrophytes – year two, Christchurch.

Sutherland, D & Taumoepeau, A 2014, Macrophytes and water quality in the Waituna Lagoon – Summer 2014, Christchurch.

Sutherland, D, Edwards, T, Wells, R & Kelly, G 2014, Assessment of the ecological condition of 8 Canterbury lakes using LakeSPI - and weed surveillance in 12 lakes, Christchurch.

Sutherland, DL 2014, Evaluating the efficiency of diquat application on Egeria densa in the Avon River, Christchurch, NZ.

Other

Ajani, PA 2014, 'Phytoplankton diversity in the coastal waters of New South Wales. PhD Thesis, Macquarie University.'.

Commault, A 2014, 'Engineering microbial fuel cell biofilm communities'.