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Publications

Books

Giordano, M, Beardall, J & Raven, JA 2005, CO2 concentrating mechanisms in algae: Mechanisms, environmental modulation, and evolution, ANNUAL REVIEWS.
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Chapters

Raven, JA, Brown, K, Mackay, M, Beardall, J, Giordano, M, Granum, E, Leegood, RC, Kilminster, K & Walker, DI 2005, 'Iron, nitrogen, phosphorus and zinc cycling and consequences for primary productivity in the oceans' in Micro-Organisms and Earth Systems - Advances in Geomicrobiology: Published for the Society for General Microbiology, pp. 247-272.
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Journal articles

Andrews, M, Maule, HG, Raven, JA & Mistry, A 2005, 'Extension growth of Impatiens glandulifera at low irradiance: Importance of nitrate and potassium accumulation', Annals of Botany, vol. 95, no. 4, pp. 641-648.
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Arain, MA & Restrepo Coupe, N 2005, 'Net ecosystem production in a temperate pine plantation in southeastern Canada', Agricultural and Forest Meteorology, vol. 128, no. 3-4, pp. 223-241.
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Belli, SI, Walker, RA & Flowers, SA 2005, 'Global protein expression analysis in apicomplexan parasites: Current status', Proteomics, vol. 5, no. 4, pp. 918-924.
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Bengtson Nash, S, Schreiber, U, Ralph, PJ & Muller, JF 2005, 'The combined SPE: Tox Y-PAM phytotoxicity assay; application and appraisal of a novel Biomonitoring tool for the aquatic environment', Biosensors and Bioelectronics, vol. 20, no. 7, pp. 1443-1451.
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Charpy-Roubaud, C & Larkum, AWD 2005, 'Dinitrogen fixation by exposed communities on the rim of Tikehau atoll (Tuamotu Archipelago, French Polynesia)', Coral Reefs, vol. 24, no. 4, pp. 622-628.
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Chen, M, Bibby, TS, Nield, J, Larkum, A & Barber, J 2005, 'Iron deficiency induces a chlorophyll d-binding Pcb antenna system around Photosystem I in Acaryochloris marina', Biochimica et Biophysica Acta - Bioenergetics, vol. 1708, no. 3, pp. 367-374.
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Chen, M, Bibby, TS, Nield, J, Larkum, AWD & Barber, J 2005, 'Structure of a large photosystem II supercomplex from Acaryochloris marina', FEBS Letters, vol. 579, no. 5, pp. 1306-1310.
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Chen, M, Eggink, LL, Hoober, JK & Larkum, AWD 2005, 'Influence of structure on bindinq of chlorophylls to peptide ligands', Journal of the American Chemical Society, vol. 127, no. 7, pp. 2052-2053.
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Chen, M, Hiller, RG, Howe, CJ & Larkum, AWD 2005, 'Unique origin and lateral transfer of prokaryotic chlorophyll-b and chlorophyll-d light-harvesting systems', Molecular Biology and Evolution, vol. 22, no. 1, pp. 21-28.
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Chen, M, Telfer, A, Lin, S, Pascal, A, Larkum, AWD, Barber, J & Blankenship, RE 2005, 'The nature of the photosystem II reaction centre in the chlorophyll d-containing prokaryote, Acaryochloris marina', Photochemical and Photobiological Sciences, vol. 4, no. 12, pp. 1060-1064.
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Coyne, K, Handy, S, Demir, E, Whereat, E, Hutchins, DA, Portune, K, Doblin, MA & Cary, S 2005, 'Improved quantitative real-time PCR assays for enumeration of harmful algal species in field samples using an exogenous DNA reference standard', Limnology and Oceanography: Methods, vol. 3, pp. 381-391.
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Drake, L, Meyer, A, Forsberg, R, Baier, R, Doblin, MA, Heinemann, SH, Johnson, W, Koch, M, Roblee, P & Dobbs, FC 2005, 'Potential invasion of microorganisms and pathogens via 'interior hull fouling': biofilms inside ballast water tanks', Biological Invasions, vol. 7, pp. 969-982.
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Ferris, MJ, Sheehan, KB, Kuhl, M, Cooksey, K, Wigglesworth-Cooksey, B, Harvey, R & Henson, JM 2005, 'Algal Species and Light Microenvironment in a Low-pH, Geothermal Microbial Mat Community', Applied and Environmental Microbiology, vol. 71, no. 11, pp. 7164-7171.
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Granum, E, Leegood, RC, Brown, K & Raven, JA 2005, 'SINGLE-CELL C(4) PHOTOSYNTHESIS IN MARINE DIATOMS?', PHYCOLOGIA, vol. 44, no. 4, pp. 38-39.

Granum, E, Leegood, RC, Brown, K & Raven, JA 2005, 'The role of the C-4 pathway in carbon acquisition by marine diatoms', COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY, vol. 141, no. 3, pp. S284-S284.

Handy, S, Coyne, K, Portune, K, Demir, E, Doblin, MA, Hare, CE, Cary, S & Hutchins, DA 2005, 'Evaluating vertical migration behaviour of harmful raphidophytes in the Delaware Inland Bays utilizing quantitative real-time PCR', Aquatic Microbial Ecology, vol. 40, pp. 121-132.
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Hawe, I, Schwarz, A-M, Sutherland, DL & Howard-Williams, C 2005, 'Aquatic Ecosystems of the McMurdo Dry Valleys – the edge of survival', Water and Atmosphere, vol. 11, no. 3, pp. 16-17.

Hill, R & Ralph, PJ 2005, 'Diel and seasonal changes in fluorescence rise kinetics of three scleractinian corals', Functional Plant Biology, vol. 32, no. 6, pp. 549-559.
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Hill, R, Frankart, C & Ralph, PJ 2005, 'Impact of bleaching conditions on the components of non-photochemical quenching in the zooxanthellae of a coral', Journal Of Experimental Marine Biology And Ecology, vol. 322, no. 1, pp. 83-92.
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Jensen, SI, Kuhl, M, Glud, RN, Jorgensen, LB & Prieme, A 2005, 'Oxic microzones and radial oxygen loss from roots of Zostera marina', Marine Ecology Progress Series, vol. 293, pp. 49-58.
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Konig, B, Kohls, O, Holst, G, Glud, RN & Kuhl, M 2005, 'Fabrication and test of sol-gel based planar oxygen optodes for use in aquatic sediments', Marine Chemistry, vol. 97, no. 3-4, pp. 262-276.
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Kuehl, M, Chen, M, Ralph, PJ, Schreiber, U & Larkum, A 2005, 'A niche for cyanobacteria containing chlorophyll d', Nature, vol. 433, no. 1, pp. 820-820.
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Kuhl, M 2005, 'Optical microsensors for analysis of microbial communities', Methods in Enzymology, vol. 397, pp. 166-199.
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Larkum, A & Kuhl, M 2005, 'Chlorophyll d: the puzzle resolved', Trends in Plant Science, vol. 10, no. 8, pp. 355-357.
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Macinnis-Ng, CM, Morrison, DJ & Ralph, PJ 2005, 'Temporal and spatial variation in the morphology of the brown macroalga Hormosira banksii (Fucales, Phaeophyta)', Botanica Marina, vol. 48, no. 3, pp. 198-207.
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Moore, LR, Ostrowski, M, Scanlan, DJ, Feren, K & Sweetsir, T 2005, 'Ecotypic variation in phosphorus acquisition mechanisms within marine picocyanobacteria', AQUATIC MICROBIAL ECOLOGY, vol. 39, no. 3, pp. 257-269.
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Murray, SA, Jorgensen, MF, Ho, SY, Patterson, DJ & Jermiin, LS 2005, 'Improving the analysis of dinoflagellate phylogeny based on rDNA', Protist, vol. 156, pp. 269-286.
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Muyzer, G, Yildirim, E, van Dongen, U, Kuhl, M & Thar, R 2005, 'Identification of 'Candidatus Thioturbo danicus,' Microaerophilic Bacterium That Builds Conspicuous Veils on Sulfidic Sediments', Applied and Environmental Microbiology, vol. 71, no. 12, pp. 8929-8933.
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O'Meara, TJ, Sercombe, JK, Morgan, G, Reddel, HK, Xuan, W & Tovey, ER 2005, 'The reduction of rhinitis symptoms by nasal filters during natural exposure to ragweed and grass pollen', Allergy, vol. 60, no. 4, pp. 529-532.
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Oren, A, Pri-El, N, Shapiro, O & Siboni, N 2005, 'Gas vesicles isolated from Halobacterium cells by lysis in hypotonic solution are structurally weakened', FEMS MICROBIOLOGY LETTERS, vol. 252, no. 2, pp. 337-341.
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Petrášek, Z, Schmitt, FJ, Theiss, C, Huyer, J, Chen, M, Larkum, A, Eichler, HJ, Kemnitz, K & Eckert, HJ 2005, 'Excitation energy transfer from phycobiliprotein to chlorophyll d in intact cells of Acaryochloris marina studied by time- and wavelength-resolved fluorescence spectroscopy', Photochemical and Photobiological Sciences, vol. 4, no. 12, pp. 1016-1022.
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Ralph, PJ & Gademann, R 2005, 'Rapid light curves: A powerful tool to assess photosynthetic activity', Aquatic Botany, vol. 82, no. 3, pp. 222-237.
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Ralph, PJ, Larkum, A & Kuehl, M 2005, 'Temporal patterns in effective quantum yield of individual zooxanthellae expelled during bleaching', Journal Of Experimental Marine Biology And Ecology, vol. 316, no. 1, pp. 17-28.
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Ralph, PJ, Macinnis-Ng, CM & Frankart, C 2005, 'Fluorescence imaging application: effect of leaf age on seagrass photokinetics', Aquatic Botany, vol. 81, no. 1, pp. 69-84.
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Ralph, PJ, McMinn, A, Ryan, KG & Ashworth, C 2005, 'Short-term effect of temperature on the photokinetics of microalgae from the surface layers of Antarctic pack ice', Journal Of Phycology, vol. 41, no. 4, pp. 763-769.
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Ralph, PJ, Schreiber, U, Gademann, R, Kuehl, M & Larkum, A 2005, 'Coral photobiology studied with a new imaging pulse amplitude modulated fluorometer', Journal Of Phycology, vol. 41, no. 2, pp. 335-342.
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Raven, J 2005, 'John Raven.', Current biology : CB, vol. 15, no. 22.

Raven, JA 2005, 'Cellular location of starch synthesis and evolutionary origin of starch genes', JOURNAL OF PHYCOLOGY, vol. 41, no. 6, pp. 1070-1072.
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Raven, JA, Andrews, M & Quigg, A 2005, 'The evolution of oligotrophy: implications for the breeding of crop plants for low input agricultural systems', ANNALS OF APPLIED BIOLOGY, vol. 146, no. 3, pp. 261-280.
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Raven, JA, Finkel, ZV & Irwin, AJ 2005, 'Picophytoplankton: Bottom-up and top-down controls on ecology and evolution', VIE ET MILIEU-LIFE AND ENVIRONMENT, vol. 55, no. 3-4, pp. 209-215.

Restrepo Coupe, N & Arain, MA 2005, 'Energy and water exchanges from a temperate pine plantation forest', Hydrological Processes, vol. 19, no. 1, pp. 27-49.
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Rodriguez-Lanetty, M, Scaramuzzi, C, Quinnell, RG & Larkum, AWD 2005, 'Transport of symbiotic zooxanthellae in mesogleal canals of Zoanthus robustus?', Coral Reefs, vol. 24, no. 2, pp. 195-196.
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Seymour, JR, Seuront, L & Mitchell, JG 2005, 'Microscale and small scale temporal dynamics of a coastal planktonic microbial community', Marine Ecology Progress Series, vol. 300, pp. 21-37.
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Smith, DJ, Suggett, DJ & Baker, NR 2005, 'Is photoinhibition of zooxanthellae photosynthesis the primary cause of thermal bleaching in corals?', Global Change Biology, vol. 11, no. 1, pp. 1-11.
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Steunou, AS, Bateson, MM, Cohan, FM, Grossman, AR, Khuri, N, Ward, DM, Kuhl, M, Heidelberg, J & Bhaya, D 2005, 'THERMOPHILIC, MAT-DWELLING CYANOBACTERIAL STRAINS AND CONTROL OF METABOLISM', PHYCOLOGIA, vol. 44, no. 4, pp. 40-40.

Thar, R & Kuhl, M 2005, 'Complex pattern formation of marine gradient bacteria explained by a simple computer model', FEMS MICROBIOLOGY LETTERS, vol. 246, no. 1, pp. 75-79.
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Trapido-Rosenthal, H, Zielke, S, Owen, R, Buxton, LJ, Boeing, B, Bhagooli, R & Archer, J 2005, 'Increased zooxanthellae nitric oxide synthase activity is associated with coral bleaching', Biological Bulletin, vol. 208, no. 1, pp. 3-6.
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Ulstrup, K, Hill, R & Ralph, PJ 2005, 'Photosynthetic impact of hypoxia on in hospite zooxanthellae in the scleractinian coral Pocillopora damicornis', Marine Ecology-Progress Series, vol. 286, pp. 125-132.
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van der Meer, MT, Schouten, S, Bateson, MM, Nubel, U, Wieland, A, Kuhl, M, de Leeuw, JW, Damste, JS & Ward, DM 2005, 'Diel Variations in Carbon Metabolism by Green Nonsulfur-Like Bacteria in Alkaline Siliceous Hot Spring Microbial Mats from Yellowstone National Park', Applied and Environmental Microbiology, vol. 71, no. 7, pp. 3978-3986.
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Wieland, A, Zopfi, J, Benthien, M & Kuhl, M 2005, 'Biogeochemistry of an Iron-Rich Hypersaline Microbial Mat (Camargue, France)', Microbial Ecology, vol. 49, no. 1, pp. 34-49.
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Conferences

Beardall, J, Roberts, S & Raven, JA 2004, 'Regulation of inorganic carbon acquisition by phosphorus limitation in the green alga Chlorella emersonii', CANADIAN JOURNAL OF BOTANY-REVUE CANADIENNE DE BOTANIQUE, 5th International Symposium on Inorganic Carbon Utilization by Aquatic Photosynthetic Organisms, NATL RESEARCH COUNCIL CANADA, St Sauveur, CANADA, pp. 859-864.
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Granum, E, Raven, JA & Leegood, RC 2004, 'How do marine diatoms fix 10 billion tonnes of inorganic carbon per year?', CANADIAN JOURNAL OF BOTANY-REVUE CANADIENNE DE BOTANIQUE, 5th International Symposium on Inorganic Carbon Utilization by Aquatic Photosynthetic Organisms, CANADIAN SCIENCE PUBLISHING, NRC RESEARCH PRESS, St Sauveur, CANADA, pp. 898-908.
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Raven, JA, Ball, LA, Beardall, J, Giordano, M & Maberly, SC 2004, 'Algae lacking carbon-concentrating mechanisms', CANADIAN JOURNAL OF BOTANY-REVUE CANADIENNE DE BOTANIQUE, 5th International Symposium on Inorganic Carbon Utilization by Aquatic Photosynthetic Organisms, CANADIAN SCIENCE PUBLISHING, NRC RESEARCH PRESS, St Sauveur, CANADA, pp. 879-890.
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Scanlan, D, Ostrowski, M, Mazard, S, Dufresne, A & Partensky, F 2005, 'GENOMICS OF MARINE SYNECHOCOCCUS', PHYCOLOGIA, INT PHYCOLOGICAL SOC, pp. 91-92.