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Publications

Books

Larkum, AWD 2009, A Natural Calling, Springer Netherlands.
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Murray, SA 2009, Diversity and phylogenetics of sand-dwelling dinoflagellates, 1, VDM Verlag, Germany.

Chapters

Ajani, PA & Rissik, D 2009, 'Coastal and marine phytoplankton: diversity and ecology' in Suthers, I & Rissik, D (eds), Plankton, A Guide to Their Ecology and Monitoring for Water Quality, CSIRO Publishing, pp. 141-155.

Rissik, D, van Senden, D, Doherty, M, Ingleton, I, Ajani, PA, Bowling, L, Gibbs, M, Gladstone, M, Kobayashi, T, Suthers, I & Froneman, W 2009, 'Plankton-related water quality issues' in Suthers, I & Rissik, D (eds), Plankton, A Guide to Their Ecology and Monitoring for Water Quality, CSIRO Publishing, pp. 39-72.

Suggett, DJ & Moore, CM 2009, 'Fluorometry for Biological Sensing' in Encyclopedia of Ocean Sciences, pp. 581-588.
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Journal articles

Acuna Alvarez, L, Exton, D, Timmis, K, Suggett, DJ & Mcgenity, T 2009, 'Characterization Of Marine Isoprene-degrading Communities', Environmental Microbiology, vol. 11, no. 12, pp. 3280-3291.
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Arotsker, L, Siboni, N, Ben-Dov, E, Kramarsky-Winter, E, Loya, Y & Kushmaro, A 2009, 'Vibrio sp as a potentially important member of the Black Band Disease (BBD) consortium in Favia sp corals', FEMS MICROBIOLOGY ECOLOGY, vol. 70, no. 3, pp. 515-524.
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Ashworth, J & Baker, D 2009, 'Assessment of the optimization of affinity and specificity at proteinDNA interfaces', NUCLEIC ACIDS RESEARCH, vol. 37, no. 10.
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Baird, AH, Bhagooli, R, Ralph, PJ & Takahashi, S 2009, 'Coral bleaching: the role of the host', Trends In Ecology & Evolution, vol. 24, no. 1, pp. 16-20.
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Bartlett, CY, Manua, C, Cinner, J, Sutton, S, Jimmy, R, South, R, Nilson, J & Raina, J 2009, 'Comparison of Outcomes of Permanently Closed and Periodically Harvested Coral Reef Reserves', Conservation Biology, vol. 23, no. 6, pp. 1475-1484.
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Bar-zeev, E, Berman-frank, I, Stambler, N, Vazquez-dominguez, E, Zohary, T, Capuzzo, E, Meeder, E, Suggett, DJ, Iluz, D, Dishon, G & Berman, T 2009, 'Transparent exopolymer particles (TEP) link phytoplankton and bacterial production in the Gulf of Aqaba', Aquatic Microbial Ecology, vol. 56, no. 2-3, pp. 217-225.
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Belli, SI, Ferguson, DJ, Katrib, M, Slapetova, I, Mai, K, Slapeta, J, Flowers, SA, Miska, KB, Tomley, FM, Shirley, M, Wallach, M & Smith, NC 2009, 'Conservation of proteins involved in oocyst wall formation in Eimeria maxima, Eimeria tenella and Eimeria acervulina', International Journal For Parasitology, vol. 39, no. 10, pp. 1063-1070.
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Buxton, LJ, Badger, M & Ralph, PJ 2009, 'Effects Of Moderate Heat Stress And Dissolved Inorganic Carbon Concentration On Photosynthesis And Respiration Of Symbiodinium Sp (Dinophyceae) In Culture And In Symbiosis', Journal of Phycology, vol. 45, no. 2, pp. 357-365.
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Cerveny, J & Nedbal, L 2009, 'Metabolic Rhythms of the Cyanobacterium Cyanothece sp ATCC 51142 Correlate with Modeled Dynamics of Circadian Clock', JOURNAL OF BIOLOGICAL RHYTHMS, vol. 24, no. 4, pp. 295-303.
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Cerveny, J, Setlik, I, Trtilek, M & Nedbal, L 2009, 'Photobioreactor for cultivation and real-time, in-situ measurement of O-2 and CO2 exchange rates, growth dynamics, and of chlorophyll fluorescence emission of photoautotrophic microorganisms', ENGINEERING IN LIFE SCIENCES, vol. 9, no. 3, pp. 247-253.
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Cinner, JE, McClanahan, TR, Graham, NAJ, Pratchett, MS, Wilson, SK & Raina, J 2009, 'Gear-based fisheries management as a potential adaptive response to climate change and coral mortality', Journal of Applied Ecology, vol. 46, pp. 724-732.
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Collier, C, Lavery, P, Ralph, PJ & Masini, R 2009, 'Shade-induced response and recovery of the seagrass Posidonia sinuosa', Journal Of Experimental Marine Biology And Ecology, vol. 370, no. 1-2, pp. 89-103.
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Dondrup, M, Albaum, SP, Griebel, T, Henckel, K, Juenemann, S, Kahlke, T, Kleindt, CK, Kuester, H, Linke, B, Mertens, D, Mittard-Runte, V, Neuweger, H, Runte, KJ, Tauch, A, Tille, F, Puehler, A & Goesmann, A 2009, 'EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data', BMC BIOINFORMATICS, vol. 10.
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Duxbury, Z, Schliep, MT, Ritchie, RJ, Larkum, A & Chen, M 2009, 'Chromatic photoacclimation extends utilisable photosynthetically active radiation in the chlorophyll d-containing cyanobacterium, Acaryochloris marina', Photosynthesis Research, vol. 101, no. 1, pp. 69-75.
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Fahnenstiel, G, Hong, Y, Millie, D, Doblin, MA, Johengen, T & Reid, D 2009, 'Marine dinoflagellate cysts in the ballast tank sediments of ships entering the Laurentian Great Lakes', Verhandlungen Internationale Verein Limnology, vol. 30, no. 7, pp. 1035-1038.
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Glud, RN, Woelfel, J, Karsten, U, Kuhl, M & Rysgaard, S 2009, 'Benthic microalgal production in the Arctic: applied methods and status of the current database', Botanica Marina, vol. 52, no. 6, pp. 559-571.
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Gribben, PE, Wright, JT, O'Connor, W, Doblin, MA, Eyre, B & Steinberg, P 2009, 'Reduced performance of native infauna following recruitment to a habitat-forming invasive marine alga', Oecologia, vol. 158, no. 4, pp. 733-745.
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Haapkyla, J, Seymour, AS, Barneah, O, Brickner, I, Hennige, S, Suggett, DJ & Smith, D 2009, 'Association of Waminoa sp. (Acoela) with corals in the Wakatobi Marine Park, South-East Sulawesi, Indonesia', Marine Biology, vol. 156, no. 5, pp. 1021-1027.
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Hennige, SJ, Suggett, DJ, Warner, ME, McDougall, KE & Smith, DJ 2009, 'Photobiology of Symbiodinium revisited: bio-physical and bio-optical signatures', Coral Reefs, vol. 28, no. 1, pp. 179-195.
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Hill, R, Ulstrup, K & Ralph, PJ 2009, 'Temperature Induced Changes In Thylakoid Membrane Thermostability Of Cultured, Freshly Isolated, And Expelled Zooxanthellae From Scleractinian Corals', Bulletin of Marine Science, vol. 85, no. 3, pp. 223-244.
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Mai, K, Sharman, PA, Walker, RA, Katrib, M, De Souza, D, McConville, M, Wallach, M, Belli, SI, Ferguson, DJ & Smith, NC 2009, 'Oocyst wall formation and composition in coccidian parasites', Memorias do Instituto Oswaldo Cruz, vol. 104, no. 2, pp. 281-289.
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Mantri, VA, Thakur, MC, Kumar, M, Reddy, CRK & Jha, B 2009, 'The carpospore culture of industrially important red alga Gracilaria dura (Gracilariales, Rhodophyta)', AQUACULTURE, vol. 297, no. 1-4, pp. 85-90.
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Mohr, R, Voss, B, Schliep, MT, Kurz, T, Maldener, I, Adams, DG, Larkum, A, Chen, M & Hess, WR 2009, 'A new chlorophyll d-containing cyanobacterium: evidence for niche adaptation in the genus Acaryochloris', ISME Journal, vol. 4, no. 11, pp. 1456-1469.
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Moore, C, Mills, M, Achterberg, E, Geider, R, Laroche, J, Lucas, M, Mcdonagh, E, Pan, X, Poulton, A, Rijkenberg, M, Suggett, DJ, Ussher, S & Woodward, E 2009, 'Large-scale Distribution Of Atlantic Nitrogen Fixation Controlled By Iron Availability', Nature Geoscience, vol. 2, no. 12, pp. 867-871.
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Murray, SA, Ip, CL, Moore, R, Nagahama, Y & Fukuyo, Y 2009, 'Are prorocentroid dinoflagellates monophyletic? A study of 25 species based on nuclear and mitochondrial genes', Protist, vol. 160, no. 2, pp. 245-264.
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Murray, SA, O'Connor, WA, Alvin, A, Mihali, TK, Kalaitzis, J & Neilan, BA 2009, 'Differential accumulation of paralytic shellfish toxins from Alexandrium minutum in the pearl oyster, Pinctada imbricata', Toxicon, vol. 54, no. 3, pp. 217-223.
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Pernice, M, Boucher, J, Boucher-Rodoni, R, Joannot, P & Bustamante, P 2009, 'Comparative bioaccumulation of trace elements between Nautilus pompilius and Nautilus macromphalus (Cephalopoda: Nautiloidea) from Vanuatu and New Caledonia', ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY, vol. 72, no. 2, pp. 365-371.
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Petrou, K, Doblin, M, Hassler, C & Ralph, P 2009, 'MULTIPLE STRESSORS ON ANTARCTIC MICROALGAE IMPACTS OF SEASONAL FREEZING AND MELTING OF SEA-ICE', PHYCOLOGIA, vol. 48, no. 4, pp. 106-106.

Quevrain, E, Domart-Coulon, I, Pernice, M & Bourguet-Kondracki, M-L 2009, 'Novel natural parabens produced by a Microbulbifer bacterium in its calcareous sponge host Leuconia nivea', ENVIRONMENTAL MICROBIOLOGY, vol. 11, no. 6, pp. 1527-1539.
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Raina, J, Tapiolas, DM, Willis, BL & Bourne, DG 2009, 'Coral-associated bacteria and their role in the biogeochemical cycling of sulfur', Applied and Environmental Microbiology, vol. 75, no. 11, pp. 3492-3501.
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Rasoulouniriana, D, Siboni, N, Ben-Dov, E, Kramarsky-Winter, E, Loya, Y & Kushmaro, A 2009, 'Pseudoscillatoria coralii gen. nov., sp nov., a cyanobacterium associated with coral black band disease (BBD)', DISEASES OF AQUATIC ORGANISMS, vol. 87, no. 1-2, pp. 91-96.
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Scanlan, DJ, Ostrowski, M, Mazard, S, Dufresne, A, Garczarek, L, Hess, WR, Post, AF, Hagemann, M, Paulsen, I & Partensky, F 2009, 'Ecological Genomics of Marine Picocyanobacteria', MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, vol. 73, no. 2, pp. 249-+.
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Seebacher, F, Murray, SA & Else, PL 2009, 'Thermal acclimation and regulation of metabolism in a reptile (Crocodylus porosus): the importance of transcriptional mechanisms and membrane composition', Physiological and Biochemical Zoology, vol. 82, no. 6, pp. 766-775.
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Seuront, L, Leterme, SC, Seymour, JR, Mitchell, JG, Ashcroft, D, Noble, W, Thomson, PG, Davidson, AT, van den Enden, R, Scott, FJ, Wright, SW, Schapira, M, Chapperon, C & Cribb, N 2009, 'Role of microbial and phytoplanktonic communities in the control of seawater viscosity off East Antarctica (30-80° E)', Deep Sea Research Part II: Topical Studies in Oceanography, vol. 57, no. 9-10, pp. 877-886.
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Seymour, JR, Ahmed, T & Stocker, R 2009, 'Bacterial chemotaxis towards the extracellular products of the toxic phytoplankton Heterosigma akashiwo', Journal Of Plankton Research, vol. 31, no. 12, pp. 1557-1561.
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Seymour, JR, Marcos & Stocker, R 2009, 'Resource Patch Formation and Exploitation throughout the Marine Microbial Food Web', AMERICAN NATURALIST, vol. 173, no. 1, pp. E15-E29.
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Siboni, N, Martinez, S, Abelson, A, Sivan, A & Kushmaro, A 2009, 'Conditioning film and initial biofilm formation on electrochemical CaCO3 deposition on a metallic net in the marine environment', BIOFOULING, vol. 25, no. 7, pp. 675-683.
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Strom, D, Ralph, PJ & Stauber, JL 2009, 'Development of a Toxicity Identification Evaluation Protocol Using Chlorophyll-a Fluorescence in a Marine Microalga', Archives Of Environmental Contamination And Toxic..., vol. 56, no. 1, pp. 30-38.
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Suggett, DJ, MacIntyre, HL, Kana, TM & Geider, RJ 2009, 'Comparing electron transport with gas exchange:parameterising exchange rates between alternative photosynthetic currencies for eukaryotic phytoplankton', Aquatic Microbial Ecology, vol. 56, no. 2-3, pp. 147-162.
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Suggett, DJ, Moore, CM, Hickman, AE & Geider, RJ 2009, 'Interpretation of fast repetition rate (FRR) fluorescence: signatures of phytoplankton community structure versus physiological state', Marine Ecology Progress Series, vol. 376, pp. 1-19.
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Sutherland, DL 2009, 'Microbial mat communities in response to recent changes in the physiochemical environment of the meltwater ponds on the McMurdo Ice Shelf, Antarctica', POLAR BIOLOGY, vol. 32, no. 7, pp. 1023-1032.
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Sutherland, DL & Hawes, I 2009, 'Annual growth layers as proxies of past growth conditions for benthic microbial mats in a perennially ice-covered Antarctic lake', FEMS MICROBIOLOGY ECOLOGY, vol. 67, no. 2, pp. 279-292.
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Thompson, PA, Baird, ME, Ingleton, T & Doblin, MA 2009, 'Long-term changes in temperate Australian coastal waters: implications for phytoplankton', Marine Ecology Progress Series, vol. 394, pp. 1-19.
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Thyme, SB, Jarjour, J, Takeuchi, R, Havranek, JJ, Ashworth, J, Scharenberg, AM, Stoddard, BL & Baker, D 2009, 'Exploitation of binding energy for catalysis and design', NATURE, vol. 461, no. 7268, pp. 1300-U142.
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Conferences

Doblin, MA, Ralph, PJ, Oubelkheir, K, Hassler, CS, Suthers, I & Thompson, P 2009, 'Using IMOS to bridge the gap between direct measurements of marine primary production and models', Adelaide, Australia.

Jeffries, TC, Newton, K, Leterme, S, Seymour, JR, Dinsdale, E, Gilbert, J, Roudnew, B, Smith, R, Seuront, L & Mitchell, J 2009, 'Taxonomic clustering of microbial metagenomes in the Coorong lagoon system', Adelaide, Australia.

Jeffries, TC, Newton, K, Leterme, S, Seymour, JR, Dinsdale, E, Roudnew, B, Smith, R, Seuront, L & Mitchell, JG 2009, 'Functional metagenomics of sediment microbial communities from a hypersaline coastal lagoon', Adelaide, Australia.

Lavery, TJ, Roudnew, B, Seymour, JR, Mitchell, JG, Seuront, L & Smetacek, V 2009, 'Whales: A net sink or source of carbon to the atmosphere?', Adelaide, Australia.

Newton, K, Jeffries, TC, Seymour, JR, Leterme, S, Mitchell, J & Seuront, L 2009, 'Impact of salinity on viral morphological diversity', Adelaide, Australia.

Petrou, K, Doblin, MA, Hassler, CS & Ralph, PJ 2009, 'Multiple stressors on the sea ice diatom Fragilariopsis cylindrus - photophysiological impacts of seasonal freezing and melting of sea ice', Japan.

Seymour, JR 2009, 'Cascading resource patch exploitation in a heterogeneous microbial seascape', Adelaide, Australia.

Sinutok, S, Hill, R & Ralph, PJ 2009, 'The effect of light intensity on photosynthetic efficiency and calcification in three reef building species of Halimeda', ASPAB 2009 Conference, Townsville, Australia.
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Sutherland, D, Spigel, B, Plew, D, Norton, N & Howard-Williams, C 2009, 'Limiting nutrients of phytoplankton growth in the Upper Waitaki lakes', Development workshop for the Upper Waitaki Catchment, Canterbury, New Zealand.

Reports

de Winton, M, Jellyman, D, Sutherland, D & Walsh, J 2009, A review of the potential to re-establish macrophyte beds in Te Waihora (Lake Ellesmere), Hamilton.

Hallegraeff, GM, Beardall, J, Brett, S, Doblin, MA, Hosja, W, de Salas, M & Thompson, P www.oceanclimatechange.org.au 2009, Marine climate change in Australia: Impacts and adaptation responses: Phytoplankton, pp. 1-10, Australia.

Hudson, N, Hickey, C, Nagals, J, Sutherland, D & Wells, R 2009, Joint venture discharge consent renewal – assessment of effects on the Tarawera River: Water Quality and aquatic plants, Hamilton.

Norton, N, Spigel, B, Sutherland, DL, Trolle, D & Plew, D 2009, Lake Benmore Water Quality: a modelling method to assist with assessments of nutrient loadings., Christchurch, NZ.

Salas, M, Cheal, A, Lough, J, McKinnon, D, Meekan, M, Sweatman, H, Coleman, M, Chambers, L, Dunlop, N, Church, J, Dowdney, J, Feng, M, Griffiths, S, Hobday, A, Matear, R, Poloczanska, E, Richardson, A, Ridgway, K, Risbey, J, Thompson, P, Thresher, R, Weller, E, Saintilan, N, Wilson, S, Lenanton, R, Hosja, W, Moore, P, Wernberg, T, Marshall, D, Connolly, R, Hill, K, Congdon, B, Devney, C, Fuentes, M, Graham, N, Hamann, M, Kingsford, M, Munday, P, Pratchett, M, Sheaves, M, Beardall, J, Brett, S, Waschka, M, Dann, P, Edgar, G, Swadling, K, Connell, S, Russell, B, Ward, T, Lukoschek, V, McGregor, S, Jenkins, G, Campbell, A, Steinberg, P, Anthony, K, Lovelock, C, Skilleter, G, Figueira, WF, Booth, DJ, Doblin, MA, Davidson, J, Holbrook, N, Howard, W, Kendrick, G & Smale, D NCCARF Publication 2009, Report Card of Marine Climate Change for Australia, pp. 1-2, Australia.

Sutherland, D & Edwards, T 2009, Weed surveillance of four Canterbury High Country Lakes and the Ecological Condition of Lakes Ohau and Alexandrina using LakeSPI, Christchurch.

Sutherland, D, Kelly, G, Dumas, J, Spigel, B & Norton, N 2009, Water quality parameters in the Upper Waitaki Basin December 2008 – April 2009, Christchurch.

Sutherland, DL 2009, Effects of MTAD on Te Waiwai Lagoon, Southland - Statement of Evidence, Christchurch, NZ.

Sutherland, DL 2009, Effects of the proposed MTAD on the water quality and aquatic ecology in the Southern Lakes, Statement of Evidence, Christchurch, NZ.

Other

Norton, N, Spigel, B, Sutherland, D & Howard-Williams, C 2009, 'Waitaki Lakes Water Quality: a method to define sustainable thresholds for nutrient loading for regional planning'.

Norton, N, Spigel, B, Sutherland, D, Trolle, D & Plew, D 2009, 'Lake Benmore water quality: a modelling method to assist with assessments for nutrient loadings'.

Spigel, B, Trolle, D, Sutherland, D, Plew, DR, Norton, N & Howard-Williams, C 2009, 'Waitaki Lakes Water Quality: a method to define sustainable thresholds for nutrient loading for regional planning'.

Sutherland, D 2009, 'Results of the pre-MTAD baseline surveys in Lakes Te Anau, Manaporui, Hauroko and the Waiau Arm'.

Sutherland, D, Spigel, B, Plew, D, Norton, N & Howard-Williams, C 2009, 'Water quality, macrophyte, periphyton and phytoplankton growth in the Upper Waitaki lakes'.