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Publications

Books

Hallegraef, GM, Bolch, CJ, Hill, DR, Jameson, I, LeRoi, J, McMinn, A, Murray, SA, de Salas, F & Saunders, K 2010, Algae of Australia: Phytoplankton of temperate coastal waters, 1, CSIRO Publishing, Canberra.

Suggett, DJ, Borowitzka, M & Prášil, O 2010, Chlorophyll a Fluorescence in Aquatic Sciences: Methods and Applications, Springer Science & Business Media.
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Chapters

Hennige, SJ, Suggett, DJ, Hepburn, LJ, Pugsley, A, Crabbe, J & Smith, DJ 2010, 'Coral reefs of the Wakatobi: Processes of reef growth and loss' in Marine Research and Conservation in the Coral Triangle, Nova, USA, pp. 27-44.
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Neilan, BA, Murray, SA & Chen, M 2010, 'Genomic contributions to understanding the evolution of red algal plastids and pigment biosynthesis' in Seckbach, J & Chapman, DJ (eds), Red algae in the genomic age, Springer, Netherlands, pp. 261-273.
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Suggett, DJ, Moore, CM & Geider, RJ 2010, 'Estimating Aquatic Productivity from Active Fluorescence Measurements' in Suggett, DJ, Prasil, O & Borowitzka, M (eds), Chlorophyll a Fluorescence in Aquatic Sciences: Methods and Applications, Springer Science & Business Media, 15, pp. 103-127.
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Journal articles

Al-Najjar, MA, de Beer, D, Jorgensen, BB, Kuhl, M & Polerecky, L 2010, 'Conversion and conservation of light energy in a photosynthetic microbial mat ecosystem', ISME Journal, vol. 4, no. 3, pp. 440-449.
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Amoroso, S, Clarke, RJ, Larkum, A & Quinnell, R 2010, 'Electrogenic plasma membrane H+-ATPase activity using voltage sensitive dyes', Journal of Bioenergetics and Biomembranes, vol. 42, no. 5, pp. 387-393.
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Andersen, SB, Vestergaard, ML, Ainsworth, TD, Hoegh-Guldberg, O & Kuhl, M 2010, 'Acute tissue death (white syndrome) affects the microenvironment of tabular Acropora corals', Aquatic Biology, vol. 10, no. 1, pp. 99-104.
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Andrews, M, Hodge, S & Raven, JA 2010, 'Positive plant microbial interactions', ANNALS OF APPLIED BIOLOGY, vol. 157, no. 3, pp. 317-320.
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Ashworth, J, Taylor, GK, Havranek, JJ, Quadri, SA, Stoddard, BL & Baker, D 2010, 'Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs', NUCLEIC ACIDS RESEARCH, vol. 38, no. 16, pp. 5601-5608.
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Askaer, L, Elberling, B, Glud, RN, Kuhl, M, Lauritsen, FR & Joensen, HP 2010, 'Soil heterogeneity effects on O2 distribution and CH4 emissions from wetlands: In situ and mesocosm studies with planar O2 optodes and membrane inlet mass spectrometry', Soil Biology & Biochemistry, vol. 42, no. 12, pp. 2254-2265.
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Chaloub, RM, Reinert, F, Nassar, CAG, Fleury, BG, Mantuano, DG & Larkum, AWD 2010, 'Photosynthetic properties of three Brazilian seaweeds', Revista Brasileira de Botanica, vol. 33, no. 2, pp. 371-374.
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Craggs, RJ & Sutherland, DL 2010, 'Win-win – extracting energy from wastewater', Water and Atmosphere, vol. 1, no. 5.

Csaszar, N, Ralph, PJ, Frankham, R, Berkelmans, R & van Oppen, MJ 2010, 'Estimating the Potential for Adaptation of Corals to Climate Warming', PLoS ONE, vol. 5, no. 3, pp. 1-8.
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Doblin, MA, Murphy, KR & Ruiz, GM 2010, 'Thresholds for tracing ships' ballast water:an Australian case study', Marine Ecology Progress Series, vol. 408, pp. 19-32.
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Elderfield, H, Riebesell, U, Raven, J, Gattuso, JP & Lipps, J 2010, 'Closure threat to key museum research facility', Nature, vol. 465, no. 7301, p. 1005.
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Exton, DA, Smith, DJ, McGenity, TJ, Steinke, M, Hills, AJ & Suggett, DJ 2010, 'Application of a Fast Isoprene Sensor (FIS) for measuring isoprene production from marine samples', Limnology And Oceanography-methods, vol. 8, pp. 185-195.
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Finkel, ZV, Beardall, J, Flynn, KJ, Quigg, A, Rees, TAV & Raven, JA 2010, 'Phytoplankton in a changing world: cell size and elemental stoichiometry', JOURNAL OF PLANKTON RESEARCH, vol. 32, no. 1, pp. 119-137.
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Flynn, KJ, Raven, JA, Rees, TAV, Finkel, Z, Quigg, A & Beardall, J 2010, 'IS THE GROWTH RATE HYPOTHESIS APPLICABLE TO MICROALGAE?', JOURNAL OF PHYCOLOGY, vol. 46, no. 1, pp. 1-12.
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Gadd, GM & Raven, JA 2010, 'Geomicrobiology of Eukaryotic Microorganisms', GEOMICROBIOLOGY JOURNAL, vol. 27, no. 6-7, pp. 491-519.
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Hennige, SJ, Smith, DJ, Walsh, S, McGinley, MP, Warner, ME & Suggett, DJ 2010, 'Acclimation and adaptation of scleractinian coral communities along environmental gradients within an Indonesian reef system', Journal Of Experimental Marine Biology And Ecology, vol. 391, no. 1-2, pp. 143-152.
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Herrera-Silveira, JA, Cebrian, J, Hauxwell, J, Ramirez-Ramirez, J & Ralph, PJ 2010, 'Evidence of negative impacts of ecological tourism on turtlegrass (Thalassia testudinum) beds in a marine protected area of the Mexican Caribbean', Aquatic Ecology, vol. 44, no. 1, pp. 23-31.
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Hodgson, JG, Sharafi, M, Jalili, A, Diaz, S, Montserrat-Marti, G, Palmer, C, Cerabolini, B, Pierce, S, Hamzehee, B, Asri, Y, Jamzad, Z, Wilson, P, Raven, JA, Band, SR, Basconcelo, S, Bogard, A, Carter, G, Charles, M, Castro-Diez, P, Cornelissen, JHC, Funes, G, Jones, G, Khoshnevis, M, Perez-Harguindeguy, N, Perez-Rontome, MC, Shirvany, FA, Vendramini, F, Yazdani, S, Abbas-Azimi, R, Boustani, S, Dehghan, M, Guerrero-Campo, J, Hynd, A, Kowsary, E, Kazemi-Saeed, F, Siavash, B, Villar-Salvador, P, Craigie, R, Naqinezhad, A, Romo-Diez, A, de Torres Espuny, L & Simmons, E 2010, 'Stomatal vs. genome size in angiosperms: the somatic tail wagging the genomic dog?', ANNALS OF BOTANY, vol. 105, no. 4, pp. 573-584.
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Kalaitzis, JA, Chau, R, Kohli, GS, Murray, SA & Neilan, BA 2010, 'Biosynthesis of toxic naturally-occurring seafood contaminants', Toxicon, vol. 56, no. 2, pp. 244-258.
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Khan, N-UH, Pandya, N, Kumar, M, Bera, PK, Kureshy, RI, Abdi, SHR & Bajaj, HC 2010, 'Influence of chirality using Mn(III) salen complexes on DNA binding and antioxidant activity', ORGANIC & BIOMOLECULAR CHEMISTRY, vol. 8, no. 19, pp. 4297-4307.
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Khomik, M, Arain, MA, Brodeur, JJ, Peichl, M, Restrepo-Coupe, N & McLaren, JD 2010, 'Relative contributions of soil, foliar, and woody tissue respiration to total ecosystem respiration in four pine forests of different ages', JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES, vol. 115.
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Kumar, M, Gupta, V, Kumari, P & Reddy, CRK 2010, 'Assesment of nutrient composition and antioxidant potential of seaweeds from Caulerpaceae.', Journal of Food Composition and Analysis, vol. 24, no. 2, pp. 270-278.
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Kumar, M, Kumari, P, Gupta, V, Anisha, PA, Reddy, CRK & Jha, B 2010, 'Differential responses to cadmium induced oxidative stress in marine macroalga Ulva lactuca (Ulvales, Chlorophyta)', BIOMETALS, vol. 23, no. 2, pp. 315-325.
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Kumar, M, Kumari, P, Gupta, V, Reddy, CRK & Jha, B 2010, 'Biochemical responses of red alga Gracilaria corticata (Gracilariales, Rhodophyta) to salinity induced oxidative stress', JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY, vol. 391, no. 1-2, pp. 27-34.
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Kumari, P, Kumar, M, Gupta, V, Reddy, CRK & Jha, B 2010, 'Tropical marine macroalgae as potential sources of nutritionally important PUFAs', FOOD CHEMISTRY, vol. 120, no. 3, pp. 749-757.
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Lambers, H, Brundrett, MC, Raven, JA & Hopper, SD 2010, 'Plant mineral nutrition in ancient landscapes: high plant species diversity on infertile soils is linked to functional diversity for nutritional strategies', PLANT AND SOIL, vol. 334, no. 1-2, pp. 11-31.
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Larkum, AWD 2010, 'Limitations and prospects of natural photosynthesis for bioenergy production', Current Opinion in Biotechnology, vol. 21, no. 3, pp. 271-276.
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Lavery, TJ, Roudnew, B, Gill, P, Seymour, JR, Seuront, L, Johnson, G, Mitchell, J & Smetacek, V 2010, 'Iron Defecation By Sperm Whales Stimulates Carbon Export In The Southern Ocean', Proceedings Of The Royal Society B-Biological Sciences, vol. 277, no. 1699, pp. 3527-3531.
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Lilley, R, Ralph, PJ & Larkum, A 2010, 'The determination of activity of the enzyme Rubisco in cell extracts of the dinoflagellate alga Symbiodinium sp. by manganese chemiluminescence and its response to short-term thermal stress of the alga', Plant Cell and Environment, vol. 33, no. 6, pp. 995-1004.
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McMinn, A, Pankowskii, A, Ashworth, C, Bhagooli, R, Ralph, PJ & Ryan, K 2010, 'In situ net primary productivity and photosynthesis of Antarctic sea ice algal, phytoplankton and benthic algal communities', Marine Biology, vol. 157, no. 6, pp. 1345-1356.
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Ostrowski, M, Mazard, S, Tetu, SG, Phillippy, K, Johnson, A, Palenik, B, Paulsen, IT & Scanlan, DJ 2010, 'PtrA is required for coordinate regulation of gene expression during phosphate stress in a marine Synechococcus', ISME JOURNAL, vol. 4, no. 7, pp. 908-921.
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Perinchery, SM, Kuzhiumparambil, U, Vemulpad, S & Goldys, EM 2010, 'The influence of indoxyl sulfate and ammonium on the autofluorescence of human urine', TALANTA, vol. 80, no. 3, pp. 1269-1276.
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Perinchery, SM, Kuzhiumparambil, U, Vemulpad, S & Goldys, EM 2010, 'The potential of autofluorescence spectroscopy to detect human urinary tract infection', TALANTA, vol. 82, no. 3, pp. 912-917.
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Petrou, K, Hill, R, Brown, CM, Campbell, DA, Doblin, MA & Ralph, PJ 2010, 'Rapid photoprotection in sea-ice diatoms from the East Antarctic pack ice', Limnology and Oceanography, vol. 55, no. 3, pp. 1400-1407.
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Poulter, B, Hattermann, F, Hawkins, E, Zaehles, Z, Sitch, S, Restrepo Coupe, N, Heyder, U & Cramer, W 2010, 'Robust dynamics of Amazon dieback to climate change with perturbed ecosystem model parameters', Global Change Biology, vol. 16, no. 9, pp. 2476-2495.
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Ragni, M, Airs, R, Hennige, SJ, Suggett, DJ, Warner, ME & Geider, RJ 2010, 'PSII photoinhibition and photorepair in Symbiodinium (Pyrrhophyta) differs between thermally tolerant and sensitive phylotypes', Marine Ecology Progress Series, vol. 406, pp. 57-70.
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Raina, J, Dinsdale, EA, Willis, BL & Bourne, DG 2010, 'Do the organic sulfur compounds DMSP and DMS drive coral microbial associations?', Trends in Microbiology, vol. 18, no. 3, pp. 101-108.
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Raven, J & Thomas, H 2010, 'Grasses', Current Biology, vol. 20, no. 19.
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Raven, JA 2010, 'Cyanotoxins: A Poison that Frees Phosphate', CURRENT BIOLOGY, vol. 20, no. 19, pp. R850-R852.
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Raven, JA 2010, 'Inorganic carbon acquisition by eukaryotic algae: four current questions', PHOTOSYNTHESIS RESEARCH, vol. 106, no. 1-2, pp. 123-134.
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Raven, JA 2010, 'Why are mycorrhizal fungi and symbiotic nitrogen-fixing bacteria not genetically integrated into plants?', ANNALS OF APPLIED BIOLOGY, vol. 157, no. 3, pp. 381-391.
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Raven, JA & Andrews, M 2010, 'Evolution of tree nutrition', TREE PHYSIOLOGY, vol. 30, no. 9, pp. 1050-1071.
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Raven, JA & Knoll, AH 2010, 'Non-Skeletal Biomineralization by Eukaryotes: Matters of Moment and Gravity', GEOMICROBIOLOGY JOURNAL, vol. 27, no. 6-7, pp. 572-584.
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Renberg, L, Johansson, AI, Shutova, T, Stenlund, H, Aksmann, A, Raven, JA, Gardestrom, P, Moritz, T & Samuelsson, G 2010, 'A Metabolomic Approach to Study Major Metabolite Changes during Acclimation to Limiting CO2 in Chlamydomonas reinhardtii', PLANT PHYSIOLOGY, vol. 154, no. 1, pp. 187-196.
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Rosic, NN, Pernice, M, Dunn, S, Dove, S & Hoegh-Guldberg, O 2010, 'Differential Regulation by Heat Stress of Novel Cytochrome P450 Genes from the Dinoflagellate Symbionts of Reef-Building Corals', APPLIED AND ENVIRONMENTAL MICROBIOLOGY, vol. 76, no. 9, pp. 2823-2829.
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Seery, CR & Ralph, PJ 2010, 'Ecological relevance of a chlorophyll a fluorescence ecotoxicological endpoint', Toxicological and Environmental Chemistry, vol. 92, no. 8, pp. 1529-1540.
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Seymour, JR, Ahmed, T, Durham, W & Stocker, R 2010, 'Chemotactic Response Of Marine Bacteria To The Extracellular Products Of Synechococcus And Prochlorococcus', Aquatic Microbial Ecology, vol. 59, no. 2, pp. 161-168.
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Seymour, JR, Simo, R, Ahmed, T & Stocker, R 2010, 'Chemoattraction to Dimethylsulfoniopropionate in the marine microbial food web', Science, vol. 329, no. 5989, pp. 342-345.
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Siboni, N, Rasoulouniriana, D, Ben-Dov, E, Kramarsky-Winter, E, Sivan, A, Loya, Y, Hoegh-Guldberg, O & Kushmaro, A 2010, 'Stramenopile Microorganisms Associated with the Massive Coral Favia sp.', JOURNAL OF EUKARYOTIC MICROBIOLOGY, vol. 57, no. 3, pp. 236-244.
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Spilling, K, Titelman, J, Greve, T & Kuhl, M 2010, 'Microsensor Measurements Of The External And Internal Microenvironment Of Fucus Vesiculosus (Phaeophyceae)', Journal of Phycology, vol. 46, no. 6, pp. 1350-1355.
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Szabo, M, Premvardhan, L, Lepetit, B, Goss, R, Wilhelm, C & Garab, G 2010, 'Functional heterogeneity of the fucoxanthins and fucoxanthin-chlorophyll proteins in diatom cells revealed by their electrochromic response and fluorescence and linear dichroism spectra', Chemical Physics, vol. 373, no. 1-2, pp. 110-114.
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Titlyanov, EA, Kiyashko, SI, Titlyanova, TV & Raven, JA 2010, 'delta C-13 and delta N-15 in tissue of coral polyps and epilithic algae inhabiting damaged coral colonies under the influence of different light intensities', AQUATIC ECOLOGY, vol. 44, no. 1, pp. 13-21.
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Touzet, N, Farrell, H, Rathaille, A, Rodriguez, P, Alfonso, A, Botana, L & Raine, R 2010, 'Dynamics of co-occurring Alexandrium minutum (Global Clade) and A. tamarense (West European) (Dinophyceae) during a summer bloom in Cork Harbour, Ireland (2006)', Deep-sea Research Part Ii-topical Studies In Oceanography, vol. 57, no. 3-4, pp. 268-278.
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van Haren, JLM, Cosme de Oliveira, R, Restrepo-Coupe, N, Hutyra, L, de Camargo, PB, Keller, M & Saleska, SR 2010, 'Do plant species influence soil CO2 and N2O fluxes in a diverse tropical forest?', JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES, vol. 115.
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Wright, JT, Byers, JE, Koukoumaftsis, L, Ralph, PJ & Gribben, PE 2010, 'Native species behaviour mitigates the impact of habitat-forming invasive seaweed', Oecologia, vol. 163, no. 2, pp. 527-534.
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Zhang, Y, Chen, M, Church, WB, Lau, KW, Larkum, AWD & Jermiin, LS 2010, 'The molecular structure of the IsiA-Photosystem I supercomplex, modelled from high-resolution, crystal structures of Photosystem I and the CP43 protein', Biochimica et Biophysica Acta - Bioenergetics, vol. 1797, no. 4, pp. 457-465.
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Conferences

Ajani, P, Armand, L & Murray, S 2010, 'Travelling Through Time: Microalgal Diversity in New South Wales, Australia (Poster Presentation). 14th International Conference on Harmful Algal Blooms 2011, Greece.', Travelling Through Time: Microalgal Diversity in New South Wales, Australia. P.
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Bryce, JH, Scott, MB, McCafferty, KA, Johnston, AM, Raven, JA, Thornton, JM, Morris, PC & Footitt, S 1970, 'Mobilisation of energy reserves in barley grains during imbibition of water', DISTILLED SPIRITS: NEW HORIZONS, 3rd Worldwide Distilled Spirits Conference, NOTTINGHAM UNIV PRESS, Edinburgh, SCOTLAND, pp. 39-47.

Craggs, R, Sutherland, DL & Campbell, H 2010, 'World-First Wastewater Algal Bio-crude Oil Demonstration', Proceedings of Water New Zealand’s Annual Conference, Christchurch.

Hill, R, Brown, C, DeZeeuw, K, Campbell, D & Ralph, PJ 2010, 'Increased rate of D1 repair in coral symbionts during bleaching is insufficient to counter accelerated photoinactivation', Euro ISRS Symposium 2010, Grafisch Service Center, Wageningen, The Netherlands, pp. 87-87.

Norton, N, Spigel, B, Sutherland, D, Trolle, D & Plew, D 2010, 'Lake Benmore Water Quality: a modelling method to assist with setting limits for sustainable irrigation development.', Proceedings of Water New Zealand’s Annual Conference, Christchurch, New Zealand, Christchurch.

Schrameyer, V, Kraemer, W, Hill, R, Doblin, MA, Kai, B & Ralph, PJ 2010, 'Nutritional status of hard and soft corals influences photosynthesis capacity of Symbiodinium sp. and vitality of the holobiont', Euro ISRS Symposium 2010, Grafisch Service Center, Wageningen, The Netherlands, pp. 108-108.

Sinutok, S, Hill, R, Doblin, MA & Ralph, PJ 2010, 'Rising ocean temperature and ocean acidification will reduce productivity and calcification in Halimeda sp. and benthic foraminifera from the Great Barrier Reef', Euro ISRS Symposium 2010, Grafisch Service Center, Wageningen, The Netherlands, pp. 191-191.

Reports

Chartrand, KM, McKenna, SA, Petrou, K, Jimenez Denness, IM, Franklin, J, Sankey, TL, Hedge, SA, Rasheed, M & Ralph, PJ DEEDI Publication 2010, Port Curtis Benthic Primary Producer Habitat Assessment and Health Studies Update: Interim Report December 2010, pp. 1-128, Cairns.
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Sutherland, D 2010, Monitoring the potential effects of MTAD on the Waiau Arm macrophytes: baseline survey, Christchurch.

Sutherland, D 2010, Pre and post monitoring of diaquat control of egeria in the Avon River, Christchurch.

Sutherland, D 2010, Ulva / Gracilaria surveys in the Avon – Heathcote Estuary 2009-10 summer period, Christchurch.

Sutherland, D, Champion, P, Wells, R & Kelly, G 2010, Monitoring the potential effects of MTAD on Lakes Te Anau and Manapouri macrophytes: baseline survey, Christchurch.

Wells, R & Sutherland, D 2010, Hornwort eradication programme, Centennial Lake, Timaru. Report on endothall treatment to April 2010, Hamilton.

Other

Sutherland, D 2010, 'Results of the pre-MTAD baseline surveys in Lakes Te Anau, Manaporui, Hauroko and the Waiau Arm'.

Sutherland, D & Champion, P 2010, 'Trends in inter-decile hydrological variance in Lakes Te Anau, Manapouri and Hauroko and its effects on rare and threatened aquatic turf species'.