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Publications

Chapters

Raven, JA & Edwards, D 2004, 'Physiological evolution of lower embryophytes: Adaptations to the terrestrial environment' in The Evolution of Plant Physiology, pp. 17-41.
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Journal articles

Andrews, M, Lea, PJ, Raven, JA & Lindsey, K 2004, 'Can genetic manipulation of plant nitrogen assimilation enzymes result in increased crop yield and greater N-use efficiency? An assessment', ANNALS OF APPLIED BIOLOGY, vol. 145, no. 1, pp. 25-40.
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Aridgides, LJ, Doblin, MA, Berke, T, Dobbs, FC, Matson, DO & Drake, L 2004, 'Multiplex PCR allows simultaneous detection of pathogens in ships' ballast water', Marine Pollution Bulletin, vol. 48, no. 11-12, pp. 1096-1101.
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Baines, SB, Fisher, NK, Doblin, MA, Cutter, GA, Cutter, LS & Cole, B 2004, 'Light dependence of selenium uptake by phytoplankton and implications for predicting selenium incorporation into food webs', Limnology and Oceanography, vol. 49, no. 2, pp. 566-578.
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Beardall, J & Raven, JA 2004, 'The potential effects of global climate change on microalgal photosynthesis, growth and ecology', PHYCOLOGIA, vol. 43, no. 1, pp. 26-40.
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Belli, SI, Mai, K, Skene, C, Gleeson, M, Witcombe, DM, Katrib, M, Finger, A, Wallach, M & Smith, NC 2004, 'Characterisation of the antigenic and immunogenetic properties of bacterially expressed, sexual stage antigens of the coccidian parasite, Eimeria maxima', Vaccine, vol. 22, pp. 4316-4325.
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Benthien, M, Wieland, A, de Oteyza, TG, Grimalt, J & Kuhl, M 2004, 'Oil contamination on a hypersaline microbial mat community (Camargue, France) as studied with microsensors and geochemical analysis', OPHELIA, vol. 58, no. 3, pp. 135-150.
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Budel, B, Weber, B, Kuhl, M, Pfanz, H, Sultemeyer, D & Wessels, D 2004, 'Reshaping of sandstone surfaces by cryptoendolithic cyanobacteria: bioalkalization causes chemical weathering in arid landscapes', Geobiology, vol. 2, pp. 261-268.
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Carfrae, JA, Sheppard, LJ, Raven, JA, Leith, ID, Stein, W, Crossley, A & Theobald, M 2004, 'Early effects of atmospheric ammonia deposition on Calluna vulgaris (L.) hull growing on an ombrotrophic peat bog', Water, Air, and Soil Pollution: Focus, vol. 4, no. 6, pp. 229-239.
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Caumette, P, Cohen, Y, Grimalt, J, Herbert, R & Kuhl, M 2004, 'Special Issue: Role of microbial mats in the bioremediation of oil polluted coastal zones - Preface', OPHELIA, vol. 58, no. 3, pp. 133-134.

Caumette, P, Cohen, Y, Grimalt, J, Herbert, R & Kühl, M 2004, 'Ophelia: Preface', Ophelia, vol. 58, no. 3, pp. 133-134.

Chen, M, Zeng, H, Larkum, AWD & Cai, ZL 2004, 'Raman properties of chlorophyll d, the major pigment of Acaryochloris marina: Studies using both Raman spectroscopy and density functional theory', Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy, vol. 60, no. 3, pp. 527-534.
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Cockell, CS & Raven, JA 2004, 'Zones of photosynthetic potential on Mars and the early Earth', Icarus, vol. 169, no. 2, pp. 300-310.
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Cooke, RRM, Hurd, CL, Lord, JM, Peake, BM, Raven, JA & Rees, TAV 2004, 'Iron and zinc content of Hormosira banksii in New Zealand', NEW ZEALAND JOURNAL OF MARINE AND FRESHWATER RESEARCH, vol. 38, no. 1, pp. 73-85.
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Cummins, SP, Roberts, DE, Ajani, PA & Underwood, AJ 2004, 'Comparison of assemblages of phytoplankton between open water and seagrass habitats in a shallow coastal lagoon.', Marine and Freshwater Research, vol. 55, no. 5, pp. 447-146.
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Doblin, MA, Popels, LC, Coyne, K, Hutchins, DA, Cary, S & Dobbs, FC 2004, 'Transport of the harmful bloom alga Aureococcus anophagefferens by oceangoing ships and coastal boats', Applied and Environmental Microbiology, vol. 70, no. 11, pp. 6495-6500.
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Falkowski, PG, Katz, ME, Knoll, AH, Quigg, A, Raven, JA, Schofield, O & Taylor, FJR 2004, 'The evolution of modern eukaryotic phytoplankton', SCIENCE, vol. 305, no. 5682, pp. 354-360.
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Fourcans, A, de Oteyza, TG, Wieland, A, Sole, A, Diestra, E, van Bleijswijk, J, Grimalt, JO, Kuhl, M, Esteve, I, Muyzer, G, Caumette, P & Duran, R 2004, 'Characterization of functional bacterial groups in a hypersaline microbial mat community (Salins-de-Giraud, Camargue, France)', F E M S Microbiology Ecology, vol. 51, no. 1, pp. 55-70.
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Grunwald, B & Kuhl, M 2004, 'A system for imaging variable chlorophyll fluorescence of aquatic phototrophs', Ophelia, vol. 58, no. 2, pp. 79-89.

Hill, R, Larkum, A, Frankart, C, Kuehl, M & Ralph, PJ 2004, 'Loss of functional Photosystem II reaction centres in zooxanthellae of corals exposed to bleaching conditions: using fluorescence rise kinetics', Photosynthesis Research, vol. 82, pp. 59-72.
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Hill, R, Schreiber, U, Gademann, R, Larkum, A, Kuehl, M & Ralph, PJ 2004, 'Spatial heterogeneity of photosynthesis and the effect of temperature-induced bleaching condition in three species of corals', Marine Biology, vol. 144, pp. 633-640.
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Huang, EP, Marquis, CP & Gray, PP 2004, 'Process development for a recombinant Chinese hamster ovary (CHO) cell line utilizing a metal induced and amplified metallothionein expression system', Biotechnology and Bioengineering, vol. 88, no. 4, pp. 437-450.
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Jermiin, LS, Ho, SYW, Ababneh, F, Robinson, J & Larkum, AWD 2004, 'The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated', Systematic Biology, vol. 53, no. 4, pp. 638-643.
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Jorgensen, MF, Murray, S & Daugbjerg, N 2004, 'Amphidinium revisited. I. Redefinition of Amphidinium (Dinophyceae) based on cladistic and molecular phylogenetic analyses (vol 40, pg 351, 2004)', JOURNAL OF PHYCOLOGY, vol. 40, no. 6, pp. 1181-1181.
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Jorgensen, MF, Murray, SA & Daugbjerg, N 2004, 'A new genus of athecate interstitial dinoflagellates, Togula gen. nov., previously encompassed within Amphidinium sensu lato: Inferred from light and electron microscopy and phylogenetic analyses of partial large subunit ribosomal DNA sequences', Phycological Research, vol. 52, no. 3, pp. 284-299.

Jorgensen, MF, Murray, SA & Daugbjerg, N 2004, 'Amphidinium revisited. I. Redefinition of Amphidinium (Dinophyceae) based on cladistic and molecular phylogenetic analyses', Journal of Phycology, vol. 40, pp. 351-365.
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Lenzen, M, Dey, CJ & Murray, SA 2004, 'Historical accountability and cumulative impacts: the treatment of time in corporate sustainability reporting', Ecological Economics, vol. 51, no. 3-4, pp. 237-250.
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Macinnis-Ng, CM & Ralph, PJ 2004, 'In situ impact of multiple pulses of metal and herbicide on the seagrass| Zostera capricorni', Aquatic Toxicology, vol. 67, pp. 227-237.
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Macintyre, H, Lomas, M, Cornwell, J, Suggett, DJ, Gobler, C, Koch, E & Kana, T 2004, 'Mediation Of Benthic-pelagic Coupling By Microphytobenthos: An Energy- And Material-based Model For Initiation Of Blooms Of Aureococcus Anophagefferens', Harmful Algae, vol. 3, no. 4, pp. 403-437.
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Murray, SA & Patterson, DJ 2004, 'Cabra matta, gen. nov., sp. nov., a new benthic, heterotrophic dinoflagellate', European Journal of Phycology, vol. 39, pp. 229-234.
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Murray, SA, Jorgensen, MF, Daugbjerg, N & Rhodes, L 2004, 'Amphidinium revisited. II. Resolving species boundaries in the Amphidinium operculatum species complex (Dinophyceae), including the descriptions of Amphidinium trulla sp. nov. and Amphidinium gibbosum comb. nov.', Journal of Phycology, vol. 40, pp. 366-382.
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Ostrowski, M, Fegatella, F, Wasinger, V, Guilhaus, M, Corthals, GL & Cavicchioli, R 2004, 'Cross-species identification of proteins from proteome profiles of the marine oligotrophic ultramicrobacterium, Sphingopyxis alaskensis', PROTEOMICS, vol. 4, no. 6, pp. 1779-1788.
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Raven, JA 2004, 'Building botany in Cambridge', NEW PHYTOLOGIST, vol. 162, no. 1, pp. 7-8.
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Raven, JA & Waite, AM 2004, 'The evolution of silicification in diatoms: inescapable sinking and sinking as escape?', NEW PHYTOLOGIST, vol. 162, no. 1, pp. 45-61.
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Raven, JA, Handley, LL & Andrews, M 2004, 'Global aspects of C/N interactions determining plant-environment interactions', JOURNAL OF EXPERIMENTAL BOTANY, vol. 55, no. 394, pp. 11-25.
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Runcie, J, Larkum, A & Ritchie, RJ 2004, 'Uptake kinetics and assimilation of phosphorus by Catenella nipae and Ulva lactuca can be used to indicate ambient phosphate availability', Journal of Applied Phycology, vol. 16, no. 3, pp. 181-194.
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Ryan, KG, Ralph, PJ & McMinn, A 2004, 'Acclimation of Antarctic bottom-ice algal communities to lowered salinities during melting', Polar Biology, vol. 27, pp. 679-686.
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Seymour, JR, Mitchell, JG & Seuront, L 2004, 'Microscale heterogeneity in the activity of coastal bacterioplankton communities', Aquatic Microbial Ecology, vol. 35, no. 1, pp. 1-16.
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Siboni, N, Fine, M, Bresler, V & Loya, Y 2004, 'Coastal coal pollution increases Cd concentrations in the predatory gastropod Hexaplex trunculus and is detrimental to its health', Marine Pollution Bulletin, vol. 49, no. 1-2, pp. 111-118.
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Stewart, AR, Luoma, SN, Schlekat, CE, Doblin, MA & Hieb, KA 2004, 'Food web pathway determines how selenium affects aquatic ecosystems: A San Francisco Bay case study', Environmental Science & Technology, vol. 38, no. 17, pp. 4519-4526.
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Suggett, DJ, MacIntyre, HL & Geider, RJ 2004, 'Evaluation of biophysical and optical determinations of light absorption by photosystem II in phytoplankton', Limnology And Oceanography-methods, vol. 2, pp. 316-332.
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Thar, R & Kuhl, M 2004, 'Propagation of electromagnetic radiation in mitochondria?', Journal of Theoretical Biology, vol. 230, pp. 261-270.
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Witcombe, DM, Ferguson, DJ, Belli, SI, Wallach, M & Smith, NC 2004, 'Eimeria maxima TRAP family protein EmTFP250: subcellular localisation and induction of immune responses by immunisation with a recombinant C-terminal derivative', International Journal for Parasitology, vol. 34, pp. 861-872.
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Conferences

Belli, SI, Ferguson, DJ, Luxford, C, Davies, MJ, Wallach, M, Finger, A & Smith, NC 2004, 'The molecular basis of the poultry coccidiosis vaccine, Coxabic', Proceedings of the 53rd Western Poultry Disease Conference, Proceedings of the 53rd Western Poultry Disease Conference, pp. 68-70.

Raven, JA 2003, 'Symbiosis, size and celerity', SYMBIOSIS, 4th International Symbiosis Congress, SPRINGER, Halifax, CANADA, pp. 281-291.

Salih, A, Larkum, A, Cronin, T, Wiedenmann, J, Szymczak, R & Cox, G 2004, 'Biological properties of coral GFP-type proteins provide clues for engineering novel optical probes and biosensors', Proceedings of SPIE - The International Society for Optical Engineering, pp. 61-72.
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Seuront, L, Leterme, S, Seymour, JR & Mitchell, JG 2004, 'Sampling the sampling unit: A world in a bottle.', United States.

Seymour, JR & Mitchell, JG 2004, 'Microscale distributions of bacterioplankton and virus-like particles assessed using flow cytometry', United States.