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Publications

Chapters

Hennige, SJ, Suggett, DJ, Hepburn, LJ, Pugsley, A, Crabbe, J & Smith, DJ 2013, 'Coral reefs of the Wakatobi: Processes of reef growth and loss' in Marine Research and Conservation in the Coral Triangle, Nova, USA, pp. 27-44.
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Larkum, AWD 2013, 'The Golden Apples of the Sun: the History of Photosynthesis—so Far' in Advanced Topics in Science and Technology in China, Springer Berlin Heidelberg, pp. 834-839.
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Li, Y, Larkum, A, Schliep, M, Kühl, M, Neilan, B & Chen, M 2013, 'Newly Isolated Chl d-Containing Cyanobacteria' in Kuang, T, Lu, C & Zhang, L (eds), Advanced Topics in Science and Technology in China, Springer Berlin Heidelberg, Beijing, pp. 686-690.
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Journal articles

Baird, ME, Ralph, PJ, Rizwi, F, Wild-Allen, K & Steven, ADL 2013, 'A dynamic model of the cellular carbon to chlorophyll ratio applied to a batch culture and a continental shelf ecosystem', LIMNOLOGY AND OCEANOGRAPHY, vol. 58, no. 4, pp. 1215-1226.
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Behrendt, L, Staal, M, Cristescu, SM, Harren, FJM, Schliep, M, Larkum, AWD & Kühl, M 2013, 'Reactive oxygen production induced by near-infrared radiation in three strains of the Chl d-containing cyanobacterium Acaryochloris marina', F1000Research, vol. 2, pp. 44-44.
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Brading, P, Warner, ME, Smith, DJ & Suggett, DJ 2013, 'Contrasting modes of inorganic carbon acquisition amongst Symbiodinium (Dinophyceae) phylotypes', New Phytologist, vol. 200, no. 2, pp. 432-442.
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Ceh, J, Kilburn, MR, Cliff, JB, Raina, J, van Keulen, M & Bourne, DG 2013, 'Nutrient cycling in early coral life stages: Pocillopora damicornis larvae provide their algal symbiont (Symbiodinium) with nitrogen acquired from bacterial associates', Ecology and Evolution, vol. 3, no. 8, pp. 2393-2400.
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Červený, J, Sinetova, MA, Valledor, L, Sherman, LA & Nedbal, L 2013, 'Ultradian metabolic rhythm in the diazotrophic cyanobacterium Cyanothece sp. ATCC 51142', Proceedings of the National Academy of Sciences, vol. 110, no. 32, pp. 13210-13215.
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Chejara, DR, Kondaveeti, S, Prasad, K & Siddhanta, AK 2013, 'Studies on the structure–property relationship of sodium alginate based thixotropic hydrogels', RSC Advances, vol. 3, no. 36, pp. 15744-15744.
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Clark, JS, Poore, AGB, Ralph, PJ & Doblin, MA 2013, 'POTENTIAL FOR ADAPTATION IN RESPONSE TO THERMAL STRESS IN AN INTERTIDAL MACROALGA', JOURNAL OF PHYCOLOGY, vol. 49, no. 4, pp. 630-639.
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Dafforn, KA, Kelaher, BP, Simpson, SL, Coleman, MA, Hutchings, PA, Clark, GF, Knott, NA, Doblin, MA & Johnston, EL 2013, 'Polychaete Richness and Abundance Enhanced in Anthropogenically Modified Estuaries Despite High Concentrations of Toxic Contaminants', PLOS ONE, vol. 8, no. 9, pp. 1-10.
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Dennis, PG, Seymour, J, Kumbun, K & Tyson, GW 2013, 'Diverse populations of lake water bacteria exhibit chemotaxis towards inorganic nutrients', The ISME Journal, vol. 7, no. 8, pp. 1661-1664.
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Exton, DA, Suggett, DJ, McGenity, TJ & Steinke, M 2013, 'Chlorophyll‐normalized isoprene production in laboratory cultures of marine microalgae and implications for global models', Limnology and Oceanography, vol. 58, no. 4, pp. 1301-1311.
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Garby, TJ, Walter, MR, Larkum, AWD & Neilan, BA 2013, 'Diversity of cyanobacterial biomarker genes from the stromatolites of Shark Bay, Western Australia', Environmental Microbiology, vol. 15, no. 5, pp. 1464-1475.
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Gleason, FH, van Ogtrop, F, Lilje, O & Larkum, AWD 2013, 'Ecological roles of zoosporic parasites in blue carbon ecosystems', Fungal Ecology, vol. 6, no. 5, pp. 319-327.
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Gobler, CJ, Lobanov, AV, Tang, Y-Z, Turanov, AA, Zhang, Y, Doblin, M, Taylor, GT, Sanudo-Wilhelmy, SA, Grigoriev, IV & Gladyshev, VN 2013, 'The central role of selenium in the biochemistry and ecology of the harmful pelagophyte, Aureococcus anophagefferens', ISME JOURNAL, vol. 7, no. 7, pp. 1333-1343.
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Gupta, V, Thakur, RS, Reddy, CRK & Jha, B 2013, 'Central metabolic processes of marine macrophytic algae revealed from NMR based metabolome analysis', RSC Advances, vol. 3, no. 19, pp. 7037-7037.
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Gupta, V, Trivedi, N, Kumar, M, Reddy, CRK & Jha, B 2013, 'Purification and characterization of exo-β-agarase from an endophytic marine bacterium and its catalytic potential in bioconversion of red algal cell wall polysaccharides into galactans', Biomass and Bioenergy, vol. 49, pp. 290-298.
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Gustafsson, MSM, Baird, ME & Ralph, PJ 2013, 'The interchangeability of autotrophic and heterotrophic nitrogen sources in Scleractinian coral symbiotic relationships: A numerical study', ECOLOGICAL MODELLING, vol. 250, pp. 183-194.
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Hong, Y, Burford, MA, Ralph, PJ, Udy, JW & Doblin, MA 2013, 'The cyanobacterium Cylindrospermopsis raciborskii is facilitated by copepod selective grazing', HARMFUL ALGAE, vol. 29, no. 1, pp. 14-21.
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Koilraj, P, Antonyraj, CA, Gupta, V, Reddy, CRK & Kannan, S 2013, 'Novel approach for selective phosphate removal using colloidal layered double hydroxide nanosheets and use of residue as fertilizer', Applied Clay Science, vol. 86, pp. 111-118.
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Kondaveeti, S, Chejara, DR & Siddhanta, AK 2013, 'A facile one-pot synthesis of a fluorescent agarose-O-naphthylacetyl adduct with slow release properties', Carbohydrate Polymers, vol. 98, no. 1, pp. 589-595.
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Kondaveeti, S, Prasad, K & Siddhanta, AK 2013, 'Functional modification of agarose: A facile synthesis of a fluorescent agarose-tryptophan based hydrogel', Carbohydrate Polymers, vol. 97, no. 1, pp. 165-171.
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Kopp, C, Pernice, M, Domart-Coulon, I, Djediat, C, Spangenberg, JE, Alexander, DTL, Hignette, M, Meziane, T & Meibom, A 2013, 'Highly Dynamic Cellular-Level Response of Symbiotic Coral to a Sudden Increase in Environmental Nitrogen', mBio, vol. 4, no. 3.
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Kraemer, WE, Schrameyer, V, Hill, R, Ralph, PJ & Bischof, K 2013, 'PSII activity and pigment dynamics of Symbiodinium in two Indo-Pacific corals exposed to short-term high-light stress', MARINE BIOLOGY, vol. 160, no. 3, pp. 563-577.
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Krug, LA, Gherardi, DFM, Stech, JL, Leão, ZMAN, Kikuchi, RKP, Hruschka, ER & Suggett, DJ 2013, 'The construction of causal networks to estimate coral bleaching intensity', Environmental Modelling & Software, vol. 42, no. 1, pp. 157-167.
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Kuzhiumparambil, U & Fu, S 2013, 'Effect of hydrogen peroxide oxidation systems on human urinary steroid profiles', ANALYTICAL METHODS, vol. 5, no. 17, pp. 4402-4408.
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Kuzhiumparambil, U & Fu, S 2013, 'Effect of oxidizing adulterants on human urinary steroid profiles', STEROIDS, vol. 78, no. 2, pp. 288-296.
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Lawrenz, E, Silsbe, G, Capuzzo, E, Ylöstalo, P, Forster, RM, Simis, SGH, Prášil, O, Kromkamp, JC, Hickman, AE, Moore, CM, Forget, M-H, Geider, RJ & Suggett, DJ 2013, 'Predicting the Electron Requirement for Carbon Fixation in Seas and Oceans', PLoS ONE, vol. 8, no. 3, pp. e58137-e58137.
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McGinley, MP, Suggett, DJ & Warner, ME 2013, 'Transcript patterns of chloroplast‐encoded genes in cultured Symbiodinium spp. (Dinophyceae): testing the influence of a light shift and diel periodicity', Journal of Phycology, vol. 49, no. 4, pp. 709-718.
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Mengoni, A, Focardi, A, Bacci, G & Ugolini, A 2013, 'High genetic diversity and variability of bacterial communities associated with the sandhopper Talitrus saltator (Montagu) (Crustacea, Amphipoda)', Estuarine, Coastal and Shelf Science, vol. 131, pp. 75-82.
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Mitchell, JG, Seuront, L, Doubell, MJ, Losic, D, Voelcker, NH, Seymour, J & Lal, R 2013, 'The Role of Diatom Nanostructures in Biasing Diffusion to Improve Uptake in a Patchy Nutrient Environment', PLoS ONE, vol. 8, no. 5, pp. e59548-e59548.
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Mondal, AK, Su, D, Wang, Y, Chen, S & Wang, G 2013, 'Hydrothermal Synthesis of Nickel Oxide Nanosheets for Lithium-Ion Batteries and Supercapacitors with Excellent Performance', CHEMISTRY-AN ASIAN JOURNAL, vol. 8, no. 11, pp. 2828-2832.
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Mondal, D, Sharma, M, Mukesh, C, Gupta, V & Prasad, K 2013, 'Improved solubility of DNA in recyclable and reusable bio-based deep eutectic solvents with long-term structural and chemical stability', Chemical Communications, vol. 49, no. 83, pp. 9606-9606.
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Parker, L, Ross, P, O'Connor, W, Pörtner, H, Scanes, E & Wright, J 2013, 'Predicting the Response of Molluscs to the Impact of Ocean Acidification', Biology, vol. 2, no. 2, pp. 651-692.
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Petrou, K, Jimenez-Denness, I, Chartrand, K, McCormack, C, Rasheed, M & Ralph, PJ 2013, 'Seasonal heterogeneity in the photophysiological response to air exposure in two tropical intertidal seagrass species', MARINE ECOLOGY PROGRESS SERIES, vol. 482, pp. 93-106.
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Raina, J-B, Tapiolas, DM, Forêt, S, Lutz, A, Abrego, D, Ceh, J, Seneca, FO, Clode, PL, Bourne, DG, Willis, BL & Motti, CA 2013, 'DMSP biosynthesis by an animal and its role in coral thermal stress response', Nature, vol. 502, no. 7473, pp. 677-680.
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Raven, JA, Beardall, J, Larkum, AWD & Sánchez-Baracaldo, P 2013, 'Interactions of photosynthesis with genome size and function', Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 368, no. 1622, pp. 20120264-20120264.
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Roudnew, B, Lavery, TJ, Seymour, JR, Smith, RJ & Mitchell, JG 2013, 'Spatially varying complexity of bacterial and virus-like particle communities within an aquifer system', AQUATIC MICROBIAL ECOLOGY, vol. 68, no. 3, pp. 259-266.
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Sackett, O, Petrou, K, Reedy, B, De Grazia, A, Hill, R, Doblin, M, Beardall, J, Ralph, P & Heraud, P 2013, 'Phenotypic Plasticity of Southern Ocean Diatoms: Key to Success in the Sea Ice Habitat?', PLOS ONE, vol. 8, no. 11.
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SCHLIEP, M, CAVIGLIASSO, G, QUINNELL, RG, STRANGER, R & LARKUM, AWD 2013, 'Formyl group modification of chlorophyll a: a major evolutionary mechanism in oxygenic photosynthesis', Plant, Cell & Environment, vol. 36, no. 3, pp. 521-527.
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Siddhanta, AK, Kumar, S, Mehta, GK, Chhatbar, MU, Oza, MD, Sanandiya, ND, Chejara, DR, Godiya, CB & Kondaveeti, S 2013, 'Cellulose Contents of Some Abundant Indian Seaweed Species', Natural Product Communications, vol. 8, no. 4, pp. 1934578X1300800-1934578X1300800.
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Sinutok, S, Hill, R, Doblin, MA & Ralph, PJ 2013, 'Diurnal photosynthetic response of the motile symbiotic benthic foraminiferan Marginopora vertebralis', MARINE ECOLOGY PROGRESS SERIES, vol. 478, pp. 127-138.
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Smith, RJ, Jeffries, TC, Roudnew, B, Seymour, JR, Fitch, AJ, Simons, KL, Speck, PG, Newton, K, Brown, MH & Mitchell, JG 2013, 'Confined aquifers as viral reservoirs', ENVIRONMENTAL MICROBIOLOGY REPORTS, vol. 5, no. 5, pp. 725-730.
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Suggett, DJ, Dong, LF, Lawson, T, Lawrenz, E, Torres, L & Smith, DJ 2013, 'Light availability determines susceptibility of reef building corals to ocean acidification', Coral Reefs, vol. 32, no. 2, pp. 327-337.
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Tapiolas, DM, Raina, J-B, Lutz, A, Willis, BL & Motti, CA 2013, 'Direct measurement of dimethylsulfoniopropionate (DMSP) in reef-building corals using quantitative nuclear magnetic resonance (qNMR) spectroscopy', Journal of Experimental Marine Biology and Ecology, vol. 443, pp. 85-89.
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Trivedi, N, Gupta, V, Reddy, CRK & Jha, B 2013, 'Detection of ionic liquid stable cellulase produced by the marine bacterium Pseudoalteromonas sp. isolated from brown alga Sargassum polycystum C. Agardh', Bioresource Technology, vol. 132, pp. 313-319.
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Trivedi, N, Gupta, V, Reddy, CRK & Jha, B 2013, 'Enzymatic hydrolysis and production of bioethanol from common macrophytic green alga Ulva fasciata Delile', Bioresource Technology, vol. 150, pp. 106-112.
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Wong, ACK, Remin, R, Love, R, Aldred, R, Ralph, P & Cook, C 2013, 'Building Pedagogical Community in the Classroom', Christian Higher Education, vol. 12, no. 4, pp. 282-295.
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Ye, Z, Suggett, DJ, Robakowski, P & Kang, H 2013, 'A mechanistic model for the photosynthesis–light response based on the photosynthetic electron transport of photosystem II in C3 and C4 species', New Phytologist, vol. 199, no. 1, pp. 110-120.
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Ye, Z-P, Robakowski, P & Suggett, DJ 2013, 'A mechanistic model for the light response of photosynthetic electron transport rate based on light harvesting properties of photosynthetic pigment molecules', Planta, vol. 237, no. 3, pp. 837-847.
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York, PH, Gruber, RK, Hill, R, Ralph, PJ, Booth, DJ & Macreadie, PI 2013, 'Physiological and Morphological Responses of the Temperate Seagrass Zostera muelleri to Multiple Stressors: Investigating the Interactive Effects of Light and Temperature', PLOS ONE, vol. 8, no. 10.
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Conferences

Howes, JM, Stuart, BH & Ralph, PJ 1970, 'Assessing metabolic variation of endosymbiotic and cultured Symbiodinium microadriaticum using synchrotron imaging FTIR spectroscopy', 7th International Workshop on Infrared Microscopy and Spectroscopy with Accelerator-Based Sources Abstracts, 7th International Workshop on Infrared Microscopy and Spectroscopy with Accelerator-Based Sources.

Howes, M, Stuart, BH & Ralph, PJ 1970, 'MACROMOLECULAR COMPOSITION VARIES SIGNIFICANTLY BETWEEN GENETIC CLADES OF SYMBIODINIUM MICROADRIATICUM', PHYCOLOGIA, 10th International Phycological Congress, pp. 46-47.

Klement, M, Šafránek, D, Děd, T, Pejznoch, A, Nedbal, L, Steuer, R, Červený, J & Müller, S 1970, 'A Comprehensive Web-based Platform For Domain-Specific Biological Models', Electronic Notes in Theoretical Computer Science, Elsevier BV, pp. 61-67.
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Reports

Blount, C, Alderson, B, Roberts, C, Cummings, D, Pernice, M & Neilson, J 2013, Bimonthly Coral Monitoring Report: Dredging Baseline Report − Ichthys Nearshore Environmental Monitoring Program, pp. 1-258, Sydney.

Blount, C, Roberts, C, Cummings, D, Pernice, M, Neilson, J & Nicastro, A 2013, Bimonthly Coral Monitoring Report: Dredging Report 2 − Ichthys Nearshore Environmental Monitoring Program, no. 2, pp. 1-126, Sydney.

Pernice, M, Roberts, C & Nicastro, A 2013, Bimonthly Coral Monitoring Report: Dredging Report 5 − Ichthys Nearshore Environmental Monitoring Program., no. 5, pp. 1-204, Sydney.

Ralph, PJ & Sinutok, S AccessUTS Pty Limited 2013, Vallisneria and submerged macrophyte management in Penrith Lakes, Sydney.

Ralph, PJ, Skilbeck, G & Sinutok, S AccessUTS Pty Limited 2013, Vallisneria and submerged macrophyte management in the Penrith Lakes Scheme, Sydney.

Roberts, C, Pernice, M & Nicastro, A 2013, Bimonthly Coral Monitoring Report: Dredging Report 3 − Ichthys Nearshore Environmental Monitoring Program., no. 3, pp. 1-154, Sydney.

Roberts, C, Pernice, M & Nicastro, A 2013, Bimonthly Coral Monitoring Report: Dredging Report 4 − Ichthys Nearshore Environmental Monitoring Program., no. 4, pp. 1-177, Sydney.