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Publications

Books

Usher, KM, Bergman, B & Raven, JA 2007, Exploring cyanobacterial mutualisms, ANNUAL REVIEWS.
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Chapters

Kuhl, M, Chen, M & Larkum, A 2007, 'Biology of the Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina' in Seckbach, J (ed), Algae and Cyanobacteria in Extreme Environments, Springer, Netherlands, pp. 101-123.
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Murray, SA 2007, 'Phylogenetics, molecular biology and ecological impacts of a group of highly unusual protists' in Seckbach, J (ed), Algae and Cyanobacteria in Extreme Environments, Springer, Netherlands, pp. 125-140.

Raven, JA 2007, 'Evolution of Plasmodesmata' in Plasmodesmata, pp. 33-52.
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Raven, JA & Beardall, J 2007, 'Respiration in aquatic photolithotrophs' in Respiration in Aquatic Ecosystems.
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Seuront, L, Lacheze, C, Doubell, MJ, Seymour, JR, Van Dongen-Vogels, V, Newton, K, Alderkamp, AC & Mitchell, JG 2007, 'The influence of Phaeocystis globosa on microscale spatial patterns of chlorophyll a and bulk-phase seawater viscosity' in Phaeocystis, Major Link in the Biogeochemical Cycling of Climate-Relevant Elements, pp. 173-188.
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Journal articles

., AVR, ., KPU, ., KMH, ., IB & ., KVM 2007, 'Studies on Morphological and Phytochemical Variability of Different Populations of Tribulus terrestris', International Journal of Plant Breeding and Genetics, vol. 1, no. 2, pp. 95-100.
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Andrews, M, Raven, JA, Sprent, JI & Lea, PJ 2007, 'Is shoot growth correlated to leaf protein concentration?', TRENDS IN PLANT SCIENCE, vol. 12, no. 12, pp. 531-532.
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Andrews, M, Scholefield, D, Abberton, MT, McKenzie, BA, Hodge, S & Raven, JA 2007, 'Use of white clover as an alternative to nitrogen fertiliser for dairy pastures in nitrate vulnerable zones in the UK: Productivity, environmental impact and economic considerations', Annals of Applied Biology, vol. 151, no. 1, pp. 11-23.
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Andrews, M, Scholefield, D, Abberton, MT, McKenzie, BA, Hodge, S & Raven, JA 2007, 'Use of white clover as an alternative to nitrogen fertiliser for dairy pastures in nitrate vulnerable zones in the UK: productivity, environmental impact and economic considerations', ANNALS OF APPLIED BIOLOGY, vol. 151, no. 1, pp. 11-23.
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Bateman, RL, Ashworth, J, Witte, JF, Baker, L-J, Bhanumoorthy, P, Timm, DE, Hurley, TD, Grompe, M & McClard, RW 2007, 'Slow-onset inhibition of fumarylacetoacetate hydrolase by phosphinate mimics of the tetrahedral intermediate: kinetics, crystal structure and pharmacokinetics', BIOCHEMICAL JOURNAL, vol. 402, pp. 251-260.
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Beerling, DJ, Hewitt, CN, Pyle, JA & Raven, JA 2007, 'Critical issues in trace gas biogeochemistry and global change', PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, vol. 365, no. 1856, pp. 1629-1642.
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Bishop, M, Kelaher, BP, Alquezar, R, York, PH, Ralph, PJ & Skilbeck, G 2007, 'Trophic cul-de-sac, Pyrazus ebeninus, limits trophic transfer through an estuarine detritus-based food web', OIKOS, vol. 116, no. 3, pp. 427-438.
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Bostrom, KH, Riemann, L, Kuhl, M & Hagstrom, A 2007, 'Isolation and gene quantification of heterotrophic N2-fixing bacterioplankton in the Baltic Sea', Environmental Microbiology, vol. 9, no. 1, pp. 152-164.
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Cockell, CS & Raven, JA 2007, 'Ozone and life on the Archaean earth', PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, vol. 365, no. 1856, pp. 1889-1901.
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Collier, C, Lavery, P, Masini, R & Ralph, PJ 2007, 'Morphological, growth and meadow characteristics of the seagrass Posidonia sinuosa along a depth-related gradient of light availability', Marine Ecology: Progress Series, vol. 337, pp. 103-115.
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Doblin, MA, Coyne, K, Rinta-kanto, J, Wilhelm, S & Dobbs, FC 2007, 'Dynamics and short-term survival of toxic cyanobacteria species in ballast water from NOBOB vessels transiting the Great Lakes - implications for HAB invasions', Harmful Algae, vol. 6, no. 4, pp. 519-530.
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Drake, L, Doblin, MA & Dobbs, FC 2007, 'Potential microbial bioinvasions via ships' ballast water, sediment, and biofilm', Marine Pollution Bulletin, vol. 55, no. 7-9, pp. 333-341.
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Duke, NC, Meynecke, JO, Dittman, S, Ellison, AM, Anger, K, Berger, U, Cannicci, S, Diele, K, Ewel, KC, Field, C, Koedam, N, Lee, SY, Marchand, C, Nordhaus, I & Dahdouh-Guebas, F 2007, 'A world without mangroves?', Science, vol. 317, no. 5834, pp. 41-42.
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Eastberg, JH, Smith, AM, Zhao, L, Ashworth, J, Shen, BW & Stoddard, BL 2007, 'Thermodynamics of DNA target site recognition by homing endonucleases', NUCLEIC ACIDS RESEARCH, vol. 35, no. 21, pp. 7209-7221.
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Finkl, CW & Restrepo Coupe, N 2007, 'Potential Natural Environments Based on Pedological Properties in the Coastal Conurbation of Subtropical Southeast Florida', Journal of Coastal Research, vol. 23, no. 2, pp. 319-351.
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Giordano, M, Norici, A, Gilmour, DJ & Raven, JA 2007, 'Physiological responses of the green alga Dunaliella parva (Volvocales, Chlorophyta) to controlled incremental changes in the N source', FUNCTIONAL PLANT BIOLOGY, vol. 34, no. 10, pp. 925-934.
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Gloag, RS, Ritchie, RJ, Chen, M, Larkum, AWD & Quinnell, RG 2007, 'Chromatic photoacclimation, photosynthetic electron transport and oxygen evolution in the Chlorophyll d-containing oxyphotobacterium Acaryochloris marina', Biochimica et Biophysica Acta - Bioenergetics, vol. 1767, no. 2, pp. 127-135.
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Hill, R & Ralph, PJ 2007, 'Post-bleaching viability of expelled zooxanthellae from the scleractinian coral Pocillopora damicornis', Marine Ecology Progress Series, vol. 352, pp. 137-144.
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Huang, EP, Marquis, CP & Gray, PP 2007, 'Development ofSuper-CHO protein-free medium based on a statistical design', Journal of Chemical Technology & Biotechnology, vol. 82, no. 5, pp. 431-441.
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Jensen, SI, Kuhl, M & Prieme, A 2007, 'Different bacterial communities associated with the roots and bulk sediment of the seagrass Zostera marina', F E M S Microbiology Ecology, vol. 62, no. 1, pp. 108-177.
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Jones, M, McManus, DP, Sivadorai, P, Glanfield, A, Moertel, L, Belli, SI & Gobert, G 2007, 'Tracking The Fate Of Iron In Early Development Of Human Blood Flukes', International Journal Of Biochemistry & Cell Biology, vol. 39, no. 9, pp. 1646-1658.
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Jones, MR, Leith, ID, Fowler, D, Raven, JA, Sutton, MA, Nemitz, E, Cape, JN, Sheppard, LJ, Smith, RI & Theobald, MR 2007, 'Concentration-dependent NH3 deposition processes for mixed moorland semi-natural vegetation', Atmospheric Environment, vol. 41, no. 10, pp. 2049-2060.
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Jones, MR, Leith, ID, Fowler, D, Raven, JA, Sutton, MA, Nemitz, E, Cape, JN, Sheppard, LJ, Smith, RI & Theobald, MR 2007, 'Concentration-dependent NH3 deposition processes for mixed moorland semi-natural vegetation', ATMOSPHERIC ENVIRONMENT, vol. 41, no. 10, pp. 2049-2060.
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Jones, MR, Leith, ID, Raven, JA, Fowler, D, Sutton, MA, Nemitz, E, Cape, JN, Sheppard, LJ & Smith, RI 2007, 'Concentration-dependent NH3 deposition processes for moorland plant species with and without stomata', ATMOSPHERIC ENVIRONMENT, vol. 41, no. 39, pp. 8980-8994.
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Kuhl, M, Rickelt, LF & Thar, R 2007, 'Combined Imaging of Bacteria and Oxygen in Biofilms', Applied and Environmental Microbiology, vol. 73, no. 19, pp. 6289-6295.
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Larkum, A, Ip, C, Chen, M & Jermiin, L 2007, 'Phylogeny of Prochlorococcus marinus: how is this species related to the rest of the Cyanobacteria?', PHOTOSYNTHESIS RESEARCH, vol. 91, no. 2-3, pp. 272-273.

Larkum, A, Lockhart, P & Howe, C 2007, 'The origin of plastids: A shopping bag model', PHOTOSYNTHESIS RESEARCH, vol. 91, no. 2-3, pp. 272-272.

Larkum, A, Zhang, Y, Churdh, B & Jermiin, L 2007, 'Modelling the IsiA-PSI supermolecular complex of cyanobacteria', PHOTOSYNTHESIS RESEARCH, vol. 91, no. 2-3, pp. 172-172.

Larkum, AWD, Lockhart, PJ & Howe, CJ 2007, 'Shopping for plastids', TRENDS IN PLANT SCIENCE, vol. 12, no. 5, pp. 189-195.
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Lee, RS, Pritchard, TR, Ajani, PA & Black, KP 2007, 'The influence of the East Australian Current eddy field on phytoplankton dynamics in the coastal zone.', Journal of Coastal Research: an international forum for the littoral sciences, no. 50, pp. 576-584.

Leegood, R, Roberts, K, Granum, E & Raven, J 2007, 'Single-cell C-4 photosynthesis in marine diatoms?', PHOTOSYNTHESIS RESEARCH, vol. 91, no. 2-3, pp. 222-223.

Lepetit, B, Volke, D, Szabo, M, Hoffmann, R, Garab, G, Wilhelm, C & Goss, R 2007, 'Spectroscopic and molecular characterization of the oligomeric antenna of the diatom Phaeodactylum tricornutum', Biochemistry, vol. 46, no. 34, pp. 9813-9822.
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Magnusson, SH, Fine, M & Kuhl, M 2007, 'Light microclimate of endolithic phototrophs in the scleractinian corals Montipora monasteriata and Porites cylindrica', Marine Ecology Progress Series, vol. 332, no. 1, pp. 119-128.
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McMinn, A, Ryan, KG, Ralph, PJ & pankowski, A 2007, 'Spring sea ice photosynthesis, primary productivity and biomass distribution in eastern Antarctica, 2002-2004', Marine Biology, vol. 151, no. 3, pp. 985-995.
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Murray, SA, de Salas, M, Luong-Van, J & Hallegraeff, G 2007, 'Phylogenetic study of Gymnodinium dorsalisulcum comb. nov. from tropical Australian coastal waters (Dinophyceae)', Phycological Research, vol. 55, no. 2, pp. 176-184.

Murray, SA, Nagahama, Y & Fukuyo, Y 2007, 'Phylogenetic study of benthic, spine-bearing prorocentroids, including Prorocentrum fukuyoi sp. nov.', Phycological Research, vol. 55, pp. 91-102.

Pernice, M, Destoumieux-Garzon, D, Peduzzi, J, Rebuffat, S & Boucher-Rodoni, R 2007, 'Identification of a Vibrio strain producing antimicrobial agents in the excretory organs of Nautilus pompilius (Cephalopoda : Nautiloidea)', REVIEWS IN FISH BIOLOGY AND FISHERIES, vol. 17, no. 2-3, pp. 197-205.
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Pernice, M, Pichon, D, Domart-Coulon, I, Favet, J & Boucher-Rodoni, R 2007, 'Primary co-culture as a complementary approach to explore the diversity of bacterial associations in marine invertebrates: the example of Nautilus macromphalus (Cephalopoda : Nautiloidea)', MARINE BIOLOGY, vol. 150, no. 5, pp. 749-757.
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Pernice, M, Wetzel, S, Gros, O, Boucher-Rodoni, R & Dubilier, N 2007, 'Enigmatic dual symbiosis in the excretory organ of Nautilus macromphalus (Cephalopoda : Nautiloidea)', PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, vol. 274, no. 1614, pp. 1143-1152.
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Ralph, PJ, Durako, M, Enriquez, S, Collier, C & Doblin, MA 2007, 'Impact of light limitation on seagrasses', Journal of Experimental Marine Biology and Ecology, vol. 350, no. 1-2, pp. 176-193.
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Ralph, PJ, Larkum, A & Kuhl, M 2007, 'Photobiology of endolithic microorganisms in living coral skeletons: 1. Pigmentation, spectral reflectance and variable chlorophyll fluorescence analysis of endoliths in the massive corals Cyphastrea serailia, Porites lutea and Goniastrea australensi', Marine Biology, vol. 152, no. 2, pp. 395-404.
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Ralph, PJ, Ryan, KG, Martin, AJ & Fenton, G 2007, 'Melting out of sea ice causes greater photosynthetic stress in algae than freezing in', Journal Of Phycology, vol. 43, no. 5, pp. 948-956.
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Ralph, PJ, Smith, RA, Macinnis-Ng, CM & Seery, CR 2007, 'Use of fluorescence-based ecotoxicological bioassays in monitoring toxicants and pollution in aquatic systems: Review', Toxicological and Environmental Chemistry, vol. 89, no. 4, pp. 631-649.
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Raven, J 2007, 'Astrobiology: Photosynthesis in watercolours', Nature, vol. 448, no. 7152, p. 418.
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Raven, J 2007, 'Why do phytoplankton make such a Fuss about carbon dioxide?', JOURNAL OF PHYCOLOGY, vol. 43, pp. 54-55.

Raven, J & Crane, P 2007, 'Trees', Current Biology, vol. 17, no. 9.
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Raven, J, Beardall, J, Franklin, L & Giordano, M 2007, 'Influence of nutrient supply and UV on photosynthesis and inorganic carbon concentrating mechanisms: relation to environmental change?', PHOTOSYNTHESIS RESEARCH, vol. 91, no. 2-3, pp. 297-297.

Raven, JA & Larkum, AWD 2007, 'Are there ecological implications for the proposed energetic restrictions on photosynthetic oxygen evolution at high oxygen concentrations?', PHOTOSYNTHESIS RESEARCH, vol. 94, no. 1, pp. 31-42.
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Roberts, K, Granum, E, Leegood, RC & Raven, JA 2007, 'C-3 and C-4 pathways of photosynthetic carbon assimilation in marine diatoms are under genetic, not environmental, control', PLANT PHYSIOLOGY, vol. 145, no. 1, pp. 230-235.
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Roberts, K, Granum, E, Leegood, RC & Raven, JA 2007, 'Carbon acquisition by diatoms', PHOTOSYNTHESIS RESEARCH, vol. 93, no. 1-3, pp. 79-88.
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Roeselers, G, Norris, TB, Castenholz, RW, Rysgaard, S, Glud, RN, Kuhl, M & Muyzer, G 2007, 'Diversity of phototrophic bacteria in microbial mats from Arctic hot springs (Greenland)', Environmental Microbiology, vol. 9, no. 1, pp. 26-38.
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Santabarbara, S, Chen, M, Larkum, AWD & Evans, MCW 2007, 'An electron paramagnetic resonance investigation of the electron transfer reactions in the chlorophyll d containing photosystem I of Acaryochloris marina', FEBS Letters, vol. 581, no. 8, pp. 1567-1571.
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Seebacher, F & Murray, SA 2007, 'Transient receptor potential ion channels control thermoregulatory behaviour in reptiles', PLoS One, vol. 3, p. e281.
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Seuront, L, Lacheze, C, Doubell, MJ, Seymour, JR, Dongen-Vogels, VV, Newton, K, Alderkamp, AC & Mitchell, JG 2007, 'The influence of Phaeocystis globosa on microscale spatial patterns of chlorophyll a and bulk-phase seawater viscosity', Biogeochemistry, vol. 83, no. 1-3, pp. 173-188.
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Seymour, JR, Humphreys, WF & Mitchell, JG 2007, 'Stratification of the microbial community inhabiting an anchialine sinkhole', Aquatic Microbial Ecology, vol. 50, pp. 11-24.
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Seymour, JR, Marcos, M & Stocker, R 2007, 'Chemotactic Response of Marine Micro-Organisms to Micro-Scale Nutrient Layers', Journal of Visualized Experiments, vol. 4, pp. 1-3.
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Seymour, JR, Seuront, L & Mitchell, JG 2007, 'Microscale gradients of planktonic microbial communities above the sediment surface in a mangrove estuary', ESTUARINE, COASTAL AND SHELF SCIENCE, vol. 73, no. 3-4, pp. 651-666.
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Siboni, N, Lidor, M, Kramarsky-Winter, E & Kushmaro, A 2007, 'Conditioning film and initial biofilm formation on ceramics tiles in the marine environment', FEMS MICROBIOLOGY LETTERS, vol. 274, no. 1, pp. 24-29.
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Six, C, Thomas, J-C, Garczarek, L, Ostrowski, M, Dufresne, A, Blot, N, Scanlan, DJ & Partensky, F 2007, 'Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study', GENOME BIOLOGY, vol. 8, no. 12.
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Staal, M, Thar, R, Kuhl, M, van Loosdrecht, MC, Wolf, G, de Brouwer, JF & Rijstenbil, JW 2007, 'Different carbon isotope fractionation patterns during the development of phototrophic freshwater and marine biofilms', Biogeosciences, vol. 4, no. 4, pp. 613-626.
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Suggett, DJ, Le Floc'h, E, Harris, GN, Leonardos, N & Geider, RJ 2007, 'Different strategies of photoacclimation by two strains of Emiliania huxleyi (Haptophyta)', Journal Of Phycology, vol. 43, no. 6, pp. 1209-1222.
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Ulstrup, K, Kuhl, M & Bourne, DG 2007, 'Zooxanthellae Harvested by Ciliates Associated with Brown Band Syndrome of Corals Remain Photosynthetically Competent', Applied and Environmental Microbiology, vol. 73, no. 11, pp. 1968-1975.
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Ulstrup, K, Ralph, PJ, van Oppen, MJ & Kuhl, M 2007, 'Inter-polyp genetic and physiological characterisation of Symbiodinium in an Acropora valida colony', Marine Biology: international journal on life in oceans and coastal waters, vol. 153, no. 2, pp. 225-234.
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Unnikrishnan, KP, Fathima, A, Hashim, KM & Balachandran, I 2007, 'Antioxidant studies and determination of wedelolactone in Eclipta alba', Journal of Plant Sciences, vol. 2, no. 4, pp. 459-464.
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Zhang, Y, Chen, M, Zhou, BB, Jermiin, LS & Larkum, AWD 2007, 'Evolution of the inner light-harvesting antenna protein family of cyanobacteria, algae, and plants', Journal of Molecular Evolution, vol. 64, no. 3, pp. 321-331.
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Conferences

Carfrae, JA, Sheppard, LJ, Raven, JA, Leith, ID & Crossley, A 2005, 'Potassium and phosphorus additions modify the response of Sphagnum capillifolium growing on a Scottish ombrotrophic bog to enhanced nitrogen deposition', APPLIED GEOCHEMISTRY, 7th International Conference on Acid Deposition, PERGAMON-ELSEVIER SCIENCE LTD, Prague, CZECH REPUBLIC, pp. 1111-1121.
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Kamiya, E, Seymour, JR, Mitchell, JG, Nishimura, M, Hamasaki, K & Kogure, K 2007, 'Relationships between abundance of viral subpopulations, bacteria and picophytoplankton in coastal areas.', Japan.

Petrou, K, Shelly, K, Hassler, CS, Schoemann, V, Doblin, MA & Ralph, PJ 2007, 'Ocean productivity in a changing world: Iron-limitation of Southern Ocean phytoplankton and implication for Antarctic meltwater productivity', Australia.

Seymour, JR, Marcos, M & Stocker, R 2007, 'Using microfluidic channels to study microbial behaviour and ecology in a patchy seascape', Portugal.

Sorrell, B, Sutherland, D & Hawes, I 2007, 'Physiological and environmental constraints to maximum depths of emergent vegetation on New Zealand lakeshores', New Zealand Freshwater Sciences Conference.

Stocker, R & Seymour, JR 2007, 'Insights into the life of a microbe: a microfluidic approach', United Kingdom.

Sutherland, D, Sorrell, B & Hawes, I 2007, 'Isoetes alpina growth dynamics across exposure and light gradients in Lake Wanaka', New Zealand Freshwater Sciences Conference.

Reports

Ralph, PJ, Wilson, K, Hill, R & Petrou, K Institute for Water and Environmental Resource Management, and Department of Environmental Sciences, 2007, Effects of increased temperature pulses on temperate seagrass: progress reports 1-4, pp. 1-14, Sydney.

Sutherland, D 2007, Water quality and macrophyte monitoring Waiau Arm – summary of December 2006 – September 2007 measurements, Christchurch.

Sutherland, D & Unwin, M 2007, Potential biomass of Didymosphenia geminata in the upper Waitaki valley hydroelectric canals, Christchurch.

Sutherland, D, Blair, N & Kelly, G 2007, Evaluation of the state of Didymosphenia geminata in the Waiau Arm following an eighteen month ‘park and flush’ regime., Christchurch.

Sutherland, D, Champion, P, Taumoepeau, A & Wells, R 2007, Manapouri Power scheme resource consent monitoring programme: Littoral macrophytes in Lakes Manapouri, Te Anau and Hauroko, 2007, Christchurch.