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Publications

Books

Larkum, AWD, Kendrick, GA & Ralph, PJ 2018, Preface.
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Larkum, AWD, Kendrick, GA & Ralph, PJ 2018, Seagrasses of Australia: Structure, ecology and conservation.
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Chapters

Brodersen, KE, Kühl, M, Nielsen, DA, Pedersen, O & Larkum, AWD 2018, 'Rhizome, root/sediment interactions, aerenchyma and internal pressure changes in seagrasses' in Seagrasses of Australia: Structure, Ecology and Conservation, Springer, Germany, pp. 393-418.
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Koren, K & Kühl, M 2018, 'CHAPTER 7: Optical O2 Sensing in Aquatic Systems and Organisms' in RSC Detection Science, pp. 145-174.
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Larkum, A 2018, 'Evolution and Biogeography of Seagrasses' in Seagrasses of Australia: Structure, Ecology and Conservation, Springer, Switzerland, pp. 3-30.
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Larkum, AWD, Pernice, M, Schliep, M, Davey, P, Szabo, M, Raven, JA, Lichtenberg, M, Brodersen, KE & Ralph, PJ 2018, 'Photosynthesis and metabolism of seagrasses' in Seagrasses of Australia: Structure, Ecology and Conservation, Springer, Switzerland, pp. 315-342.
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Ralph, P 2018, 'Estimating Seagrass Blue Carbon and Policy Implications: The Australian Perspective' in Seagrasses of Australia: Structure, Ecology and Conservation, Springer, Switzerland, pp. 743-758.
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Seymour, JR, Laverock, B, Nielsen, DA, Trevathan-Tackett, SM & Macreadie, PI 2018, 'The microbiology of seagrasses' in Seagrasses of Australia: Structure, Ecology and Conservation, pp. 343-392.
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Journal articles

Abbriano, R, Vardar, N, Yee, D & Hildebrand, M 2018, 'Manipulation of a glycolytic regulator alters growth and carbon partitioning in the marine diatom Thalassiosira pseudonana', ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS, vol. 32, pp. 250-258.
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Achlatis, M, Pernice, M, Green, K, Guagliardo, P, Kilburn, MR, Hoegh-Guldberg, O & Dove, S 2018, 'Single-cell measurement of ammonium and bicarbonate uptake within a photosymbiotic bioeroding sponge.', The ISME journal, vol. 12, no. 5, pp. 1308-1318.
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Ajani, PA, Kahlke, T, Siboni, N, Carney, R, Murray, S & Seymour, J 2018, 'The microbiome of the cosmopolitan diatom Leptocylindrus reveals significant spatial and temporal variability', Frontiers in Microbiology, vol. 9.
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Ajani, PA, Larsson, M, Woodcock, S, Rubio, A, Farrell, H, Brett, S & Murray, S 2018, 'Bloom drivers of the potentially harmful dinoflagellate Prorocentrum minimum (Pavillard) Schiller in a south eastern temperate Australian estuary', Estuarine, Coastal and Shelf Science, vol. 215.
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Ajani, PA, McGinty, N, Finkel, ZV & Irwin, AJ 2018, 'Phytoplankton Realized Niches Track Changing Oceanic Conditions at a Long-Term Coastal Station off Sydney Australia', Frontiers in Marine Science, vol. 5, pp. 1-12.
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Ajani, PA, Verma, A, Lassudrie, M, Doblin, MA & Murray, SA 2018, 'A new diatom species P. hallegraeffii sp. nov. belonging to the toxic genus Pseudo-nitzschia (Bacillariophyceae) from the East Australian Current.', PloS one, vol. 13, no. 4, pp. e0195622-e0195622.
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Albert, LP, Wu, J, Prohaska, N, de Camargo, PB, Huxman, TE, Tribuzy, ES, Ivanov, VY, Oliveira, RS, Garcia, S, Smith, MN, Oliveira Junior, RC, Restrepo-Coupe, N, da Silva, R, Stark, SC, Martins, GA, Penha, DV & Saleska, SR 2018, 'Age-dependent leaf physiology and consequences for crown-scale carbon uptake during the dry season in an Amazon evergreen forest.', The New phytologist, vol. 219, no. 3, pp. 870-884.
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Ashworth, J 2018, 'Transcriptomic biomarkers for prediction/classification of sample conditions in marine microeukaryotes (diatoms)'.
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Baker, KG, Radford, DT, Evenhuis, C, Kuzhiumparam, U, Ralph, PJ & Doblin, MA 2018, 'Thermal niche evolution of functional traits in a tropical marine phototroph.', Journal of phycology, vol. 54, no. 6, pp. 799-810.
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Barraza Bernadas, V, Grings, F, Restrepo-Coupe, N & Huete, A 2018, 'Comparison of the performance of latent heat flux products over southern hemisphere forest ecosystems: estimating latent heat flux error structure using in situ measurements and the triple collocation method', International Journal of Remote Sensing, vol. 39, no. 19, pp. 6300-6315.
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Behrendt, L, Raina, J-B, Lutz, A, Kot, W, Albertsen, M, Halkjær-Nielsen, P, Sørensen, SJ, Larkum, AW & Kühl, M 2018, 'In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina.', The ISME Journal, vol. 12, pp. 556-567.
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Bodachivskyi, I, Kuzhiumparambil, U & Williams, DBG 2018, 'Acid-Catalyzed Conversion of Carbohydrates into Value-Added Small Molecules in Aqueous Media and Ionic Liquids.', ChemSusChem, vol. 11.
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Bouman, HA, Platt, T, Doblin, M, Figueiras, FG, Gudmundsson, K, Gudfinnsson, HG, Huang, B, Hickman, A, Hiscock, M, Jackson, T, Lutz, VA, Mélin, F, Rey, F, Pepin, P, Segura, V, Tilstone, GH, Van Dongen-Vogels, V & Sathyendranath, S 2018, 'Photosynthesis-irradiance parameters of marine phytoplankton: Synthesis of a global data set', Earth System Science Data, vol. 10, no. 1, pp. 251-266.
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Bramucci, AR, Labeeuw, L, Orata, FD, Ryan, EM, Malmstrom, RR & Case, RJ 2018, 'The bacterial symbiont Phaeobacter inhibens Shapes the life history of its algal host emiliania huxleyi', Frontiers in Marine Science, vol. 5.
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Brodersen, KE, Siboni, N, Nielsen, DA, Pernice, M, Ralph, PJ, Seymour, J & Kühl, M 2018, 'Seagrass rhizosphere microenvironment alters plant-associated microbial community composition.', Environmental microbiology, vol. 20, no. 8, pp. 2854-2864.
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Brown, MV, van de Kamp, J, Ostrowski, M, Seymour, JR, Ingleton, T, Messer, LF, Jeffries, T, Siboni, N, Laverock, B, Bibiloni-Isaksson, J, Nelson, TM, Coman, F, Davies, CH, Frampton, D, Rayner, M, Goossen, K, Robert, S, Holmes, B, Abell, GCJ, Craw, P, Kahlke, T, Sow, SLS, McAllister, K, Windsor, J, Skuza, M, Crossing, R, Patten, N, Malthouse, P, van Ruth, PD, Paulsen, I, Fuhrman, JA, Richardson, A, Koval, J, Bissett, A, Fitzgerald, A, Moltmann, T & Bodrossy, L 2018, 'Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative.', Scientific data, vol. 5, pp. 180130-180130.
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Camp, EF, Schoepf, V & Suggett, DJ 2018, 'How can "Super Corals" facilitate global coral reef survival under rapid environmental and climatic change?', Global change biology, vol. 24, no. 7, pp. 2755-2757.
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Camp, EF, Schoepf, V, Mumby, PJ & Suggett, DJ 2018, 'The Future of Coral Reefs Subject to Rapid Climate Change: Lessons From Natural Extreme Environments', FRONTIERS IN MARINE SCIENCE, vol. 5.
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Camp, EF, Schoepf, V, Mumby, PJ, Hardtke, LA, Rodolfo-Metalpa, R, Smith, DJ & Suggett, DJ 2018, 'The Future of Coral Reefs Subject to Rapid Climate Change: Lessons from Natural Extreme Environments', FRONTIERS IN MARINE SCIENCE, vol. 5.
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Chan, FCC, Altaf Arain, M, Khomik, M, Brodeur, JJ, Peichl, M, Restrepo-Coupe, N, Thorne, R, Beamesderfer, E, McKenzie, S, Xu, B, Croft, H, Pejam, M, Trant, J, Kula, M & Skubel, R 2018, 'Carbon, water and energy exchange dynamics of a young pine plantation forest during the initial fourteen years of growth', Forest Ecology and Management, vol. 410, pp. 12-26.
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Chartrand, KM, Szabó, M, Sinutok, S, Rasheed, MA & Ralph, PJ 2018, 'Living at the margins - The response of deep-water seagrasses to light and temperature renders them susceptible to acute impacts.', Marine environmental research, vol. 136, pp. 126-138.
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Clark, JS, Poore, AGB & Doblin, MA 2018, 'Shaping up for stress: Physiological flexibility is key to survivorship in a habitat-forming macroalga.', Journal of plant physiology, vol. 231, pp. 346-355.
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Copeland, E, Leonard, K, Carney, R, Kong, J, Forer, M, Naidoo, Y, Oliver, BGG, Seymour, JR, Woodcock, S, Burke, CM & Stow, NW 2018, 'Chronic Rhinosinusitis: Potential Role of Microbial Dysbiosis and Recommendations for Sampling Sites', Frontiers in Cellular and Infection Microbiology, vol. 8, pp. 1-14.
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Curson, ARJ, Williams, BT, Pinchbeck, BJ, Sims, LP, Martínez, AB, Rivera, PPL, Kumaresan, D, Mercadé, E, Spurgin, LG, Carrión, O, Moxon, S, Cattolico, RA, Kuzhiumparambil, U, Guagliardo, P, Clode, PL, Raina, J-B & Todd, JD 2018, 'DSYB catalyses the key step of dimethylsulfoniopropionate biosynthesis in many phytoplankton.', Nature microbiology, vol. 3, no. 4, pp. 430-439.
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Dann, LM, McKerral, JC, Smith, RJ, Tobe, SS, Paterson, JS, Seymour, JR, Oliver, RL & Mitchell, JG 2018, 'Microbial micropatches within microbial hotspots.', PLoS ONE, vol. 13, no. 5, pp. 1-22.
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Davey, PA, Pernice, M, Ashworth, J, Kuzhiumparambil, U, Szabó, M, Dolferus, R & Ralph, PJ 2018, 'A new mechanistic understanding of light-limitation in the seagrass Zostera muelleri.', Marine Environmental Research, vol. 134, pp. 55-67.
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Davies, CH, Ajani, P, Armbrecht, L, Atkins, N, Baird, ME, Beard, J, Bonham, P, Burford, M, Clementson, L, Coad, P, Crawford, C, Dela-Cruz, J, Doblin, MA, Edgar, S, Eriksen, R, Everett, JD, Furnas, M, Harrison, DP, Hassler, C, Henschke, N, Hoenner, X, Ingleton, T, Jameson, I, Keesing, J, Leterme, SC, McLaughlin, MJ, Miller, M, Moffatt, D, Moss, A, Nayar, S, Patten, NL, Patten, R, Pausina, SA, Proctor, R, Raes, E, Robb, M, Rothlisberg, P, Saeck, EA, Scanes, P, Suthers, IM, Swadling, KM, Talbot, S, Thompson, P, Thomson, PG, Uribe-Palomino, J, van Ruth, P, Waite, AM, Wright, S & Richardson, AJ 2018, 'A database of chlorophyll a in Australian waters', SCIENTIFIC DATA, vol. 5.
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De Clerck, O, Kao, S-M, Bogaert, KA, Blomme, J, Foflonker, F, Kwantes, M, Vancaester, E, Vanderstraeten, L, Aydogdu, E, Boesger, J, Califano, G, Charrier, B, Clewes, R, Del Cortona, A, D'Hondt, S, Fernandez-Pozo, N, Gachon, CM, Hanikenne, M, Lattermann, L, Leliaert, F, Liu, X, Maggs, CA, Popper, ZA, Raven, JA, Van Bel, M, Wilhelmsson, PKI, Bhattacharya, D, Coates, JC, Rensing, SA, Van Der Straeten, D, Vardi, A, Sterck, L, Vandepoele, K, Van de Peer, Y, Wichard, T & Bothwell, JH 2018, 'Insights into the Evolution of Multicellularity from the Sea Lettuce Genome.', Current biology : CB, vol. 28, no. 18, pp. 2921-2933.
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Farrell, H, Ajani, PA, Murray, S, Baker, P, Webster, G, Brett, S & Zammit, A 2018, 'Diarrhetic Shellfish Toxin Monitoring in Commercial Wild Harvest Bivalve Shellfish in New South Wales, Australia', Toxins, vol. 10, no. 11.
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Frommlet, JC, Wangpraseurt, D, Sousa, ML, Guimaraes, B, da Silva, MM, Kuhl, M & Serodio, J 2018, 'Symbiodinium-Induced Formation of Microbialites: Mechanistic Insights From in Vitro Experiments and the Prospect of Its Occurrence in Nature', FRONTIERS IN MICROBIOLOGY, vol. 9.
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Fujise, L, Nitschke, MR, Frommlet, JC, Serôdio, J, Woodcock, S, Ralph, PJ & Suggett, DJ 2018, 'Cell Cycle Dynamics of Cultured Coral Endosymbiotic Microalgae (Symbiodinium) Across Different Types (Species) Under Alternate Light and Temperature Conditions', Journal of Eukaryotic Microbiology, vol. 65, pp. 505-517.
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Geoghegan, JL, Pirotta, V, Harvey, E, Smith, A, Buchmann, JP, Ostrowski, M, Eden, J-S, Harcourt, R & Holmes, EC 2018, 'Virological Sampling of Inaccessible Wildlife with Drones.', Viruses, vol. 10, no. 6.
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Giardina, M, Cheong, S, Marjo, CE, Clode, PL, Guagliardo, P, Pickford, R, Pernice, M, Seymour, JR & Raina, J-B 2018, 'Quantifying Inorganic Nitrogen Assimilation by Synechococcus Using Bulk and Single-Cell Mass Spectrometry: A Comparative Study.', Frontiers in microbiology, vol. 9.
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Giordano, M, Olivieri, C, Ratti, S, Norici, A, Raven, JA & Knoll, AH 2018, 'A tale of two eras: Phytoplankton composition influenced by oceanic paleochemistry.', Geobiology, vol. 16, no. 5, pp. 498-506.
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Goessling, JW, Frankenbach, S, Ribeiro, L, Serôdio, J & Kühl, M 2018, 'Modulation of the light field related to valve optical properties of raphid diatoms: Implications for niche differentiation in the microphytobenthos', Marine Ecology Progress Series, vol. 588, pp. 29-42.
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Goessling, JW, Su, Y, Cartaxana, P, Maibohm, C, Rickelt, LF, Trampe, ECL, Walby, SL, Wangpraseurt, D, Wu, X, Ellegaard, M & Kühl, M 2018, 'Structure-based optics of centric diatom frustules: modulation of the in vivo light field for efficient diatom photosynthesis.', New Phytologist, vol. 219, no. 1, pp. 122-134.
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Haydon, TD, Seymour, JR & Suggett, DJ 2018, 'Soft corals are significant DMSP producers in tropical and temperate reefs', Marine Biology, vol. 165, no. 7.
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Hayek, MN, Longo, M, Wu, J, Smith, MN, Restrepo-Coupe, N, Tapajós, R, Da Silva, R, Fitzjarrald, DR, Camargo, PB, Hutyra, LR, Alves, LF, Daube, B, William Munger, J, Wiedemann, KT, Saleska, SR & Wofsy, SC 2018, 'Carbon exchange in an Amazon forest: From hours to years', Biogeosciences, vol. 15, no. 15, pp. 4833-4848.
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Herschend, J, Koren, K, Roder, HL, Brejnrod, A, Kuhl, M & Burmolle, M 2018, 'In Vitro Community Synergy between Bacterial Soil Isolates Can Be Facilitated by pH Stabilization of the Environment', APPLIED AND ENVIRONMENTAL MICROBIOLOGY, vol. 84, no. 21.
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Høj, L, Levy, N, Baillie, BK, Clode, PL, Strohmaier, RC, Siboni, N, Webster, NS, Uthicke, S & Bourne, DG 2018, 'Crown-of-thorns sea star, Acanthaster cf. solaris, have tissue-characteristic microbiomes with potential roles in health and reproduction.', Applied and environmental microbiology, vol. 84, no. 13.
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Hughes, DJ, Campbell, DA, Doblin, MA, Kromkamp, JC, Lawrenz, E, Moore, CM, Oxborough, K, Prášil, O, Ralph, PJ, Alvarez, MF & Suggett, DJ 2018, 'Roadmaps and Detours: Active Chlorophyll- a Assessments of Primary Productivity Across Marine and Freshwater Systems.', Environmental science & technology, vol. 52, pp. 12039-12054.
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Hughes, DJ, Varkey, D, Doblin, MA, Ingleton, T, Mcinnes, A, Ralph, PJ, van Dongen-Vogels, V & Suggett, DJ 2018, 'Impact of nitrogen availability upon the electron requirement for carbon fixation in Australian coastal phytoplankton communities', Limnology and Oceanography, vol. 63, no. 5, pp. 1891-1910.
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Kahlke, T, Jumppanen, P, Westram, R, Abell, GCG & Bodrossy, L 2018, 'ProbeSpec: batch specificity testing and visualization of oligonucleotide probe sets implemented in ARB'.
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Kim, M, Brodersen, KE, Szabó, M, Larkum, AWD, Raven, JA, Ralph, PJ & Pernice, M 2018, 'Low oxygen affects photophysiology and the level of expression of two-carbon metabolism genes in the seagrass Zostera muelleri.', Photosynthesis Research, vol. 136, no. 2, pp. 147-160.
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Laiolo, L, Matear, R, Baird, ME, Soja-Wozniak, M & Doblin, M 2018, 'Information content of in situ and remotely sensed chlorophyll-a: Learning from size-structured phytoplankton model', Journal of Marine Systems, vol. 183, pp. 1-12.
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Larkum, AWD, Ritchie, RJ & Raven, JA 2018, 'Living off the Sun: chlorophylls, bacteriochlorophylls and rhodopsins', PHOTOSYNTHETICA, vol. 56, no. 1, pp. 11-43.
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Larsson, M, Laczka, O, Suthers, I, Ajani, PA & Doblin, M 2018, 'Hitchhiking in the East Australian Current: rafting as a dispersal mechanism for harmful epibenthic dinoflagellates', Marine Ecology Progress Series.
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Larsson, ME, Laczka, OF, Harwood, DT, Lewis, RJ, Himaya, SWA, Murray, SA & Doblin, MA 2018, 'Toxicology of Gambierdiscus spp. (Dinophyceae) from Tropical and Temperate Australian Waters.', Marine drugs, vol. 16, no. 1.
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Lavoie, M, Duval, JFL, Raven, JA, Maps, F, Béjaoui, B, Kieber, DJ & Vincent, WF 2018, 'Carbonate Disequilibrium in the External Boundary Layer of Freshwater Chrysophytes: Implications for Contaminant Uptake.', Environmental Science and Technology, vol. 52, no. 16, pp. 9403-9411.
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Lawson, CA, Raina, J-B, Kahlke, T, Seymour, JR & Suggett, DJ 2018, 'Defining the core microbiome of the symbiotic dinoflagellate, Symbiodinium.', Environmental microbiology reports, vol. 10, no. 1, pp. 7-11.
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Litaker, RW, Fraga, S, Montresor, M, Brosnahan, M, Anderson, D, Hoppenrath, M, Murray, S, Wolny, J, John, U, Sampedro, N, Larsen, J & Calado, A 2018, 'A practical guide to the new nomenclature for species within the "Alexandrium tamarense" species complex', Harmful algae news / Unesco; IOC; Intergovernmental Oceanographic Commission, vol. 61, pp. 13-15.

Liu, YY, van Dijk, AIJM, Miralles, DG, McCabe, MF, Evans, JP, de Jeu, RAM, Gentine, P, Huete, A, Parinussa, RM, Wang, L, Guan, K, Berry, J & Restrepo-Coupe, N 2018, 'Enhanced canopy growth precedes senescence in 2005 and 2010 Amazonian droughts', Remote Sensing of Environment, vol. 211, pp. 26-37.
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Longo, M, Knox, RG, Levine, NM, Alves, LF, Bonal, D, Camargo, PB, Fitzjarrald, DR, Hayek, MN, Restrepo-Coupe, N, Saleska, SR, da Silva, R, Stark, SC, Tapajós, RP, Wiedemann, KT, Zhang, K, Wofsy, SC & Moorcroft, PR 2018, 'Ecosystem heterogeneity and diversity mitigate Amazon forest resilience to frequent extreme droughts.', The New phytologist, vol. 219, no. 3, pp. 914-931.
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Matthews, JL, Oakley, CA, Lutz, A, Hillyer, KE, Roessner, U, Grossman, AR, Weis, VM & Davy, SK 2018, 'Partner switching and metabolic flux in a model cnidarian-dinoflagellate symbiosis.', Proceedings. Biological sciences, vol. 285, no. 1892.
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McCauley, JI, Winberg, PC, Meyer, BJ & Skropeta, D 2018, 'Effects of nutrients and processing on the nutritionally important metabolites of Ulva sp. (Chlorophyta)', Algal Research, vol. 35, pp. 586-594.
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Mosshammer, M, Schrameyer, V, Jensen, PO, Koren, K & Kuhl, M 2018, 'Extracellular hydrogen peroxide measurements using a flow injection system in combination with microdialysis probes - Potential and challenges', FREE RADICAL BIOLOGY AND MEDICINE, vol. 128, pp. 111-123.
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Newton, K, Jeffries, TC, Smith, RJ, Seymour, JR, Seuront, L & Mitchell, JG 2018, 'Taxonomic and metabolic shifts in the Coorong bacterial metagenome driven by salinity and external inputs', Journal of Oceanology and Limnology, vol. 36, no. 6, pp. 2033-2049.
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Nielsen, S, Joseph, S, Ye, J, Chia, C, Munroe, P, van Zwieten, L & Thomas, T 2018, 'Crop-season and residual effects of sequentially applied mineral enhanced biochar and N fertiliser on crop yield, soil chemistry and microbial communities', AGRICULTURE ECOSYSTEMS & ENVIRONMENT, vol. 255, pp. 52-61.
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Nitschke, MR, Gardner, SG, Goyen, S, Fujise, L, Camp, EF, Ralph, PJ & Suggett, DJ 2018, 'Utility of photochemical traits as diagnostics of thermal tolerance amongst great barrier reef corals', Frontiers in Marine Science, vol. 5, no. FEB.
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Osman, EO, Smith, DJ, Ziegler, M, Kürten, B, Conrad, C, El-Haddad, KM, Voolstra, CR & Suggett, DJ 2018, 'Thermal refugia against coral bleaching throughout the northern Red Sea.', Global Change Biology, vol. 24, no. 2, pp. e474-e484.
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Rädecker, N, Raina, J-B, Pernice, M, Perna, G, Guagliardo, P, Kilburn, MR, Aranda, M & Voolstra, CR 2018, 'Corrigendum: Using Aiptasia as a Model to Study Metabolic Interactions in Cnidarian-Symbiodinium Symbioses.', Frontiers in physiology, vol. 9.
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Raedecker, N, Raina, J-B, Pernice, M, Perna, G, Guagliardo, P, Kilburn, MR, Aranda, M & Voolstra, CR 2018, 'Using Aiptasia as a Model to Study Metabolic Interactions in Cnidarian-Symbiodinium Symbioses', FRONTIERS IN PHYSIOLOGY, vol. 9.
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Raes, EJ, Bodrossy, L, van de Kamp, J, Bissett, A, Ostrowski, M, Brown, MV, Sow, SLS, Sloyan, B & Waite, AM 2018, 'Oceanographic boundaries constrain microbial diversity gradients in the South Pacific Ocean.', Proceedings of the National Academy of Sciences of the United States of America, vol. 115, no. 35, pp. E8266-E8275.
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Raina, J-B 2018, 'The Life Aquatic at the Microscale.', mSystems, vol. 3, no. 2.
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Raina, J-B, Eme, L, Pollock, FJ, Spang, A, Archibald, JM & Williams, TA 2018, 'Symbiosis in the microbial world: from ecology to genome evolution.', Biology open, vol. 7, no. 2.
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Raven, J 2018, 'Blue carbon: past, present and future, with emphasis on macroalgae', BIOLOGY LETTERS, vol. 14, no. 10.
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Raven, JA 2018, 'Evolution and palaeophysiology of the vascular system and other means of long-distance transport', PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, vol. 373, no. 1739.
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Raven, JA 2018, 'How long have photosynthetic organisms been aggregating soils?', The New phytologist, vol. 219, no. 4, pp. 1139-1141.
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Raven, JA 2018, 'The potential effect of low cell osmolarity on cell function through decreased concentration of enzyme substrates.', Journal of experimental botany, vol. 69, no. 20, pp. 4667-4673.
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Raven, JA & Giordano, M 2018, 'Acquisition and metabolism of carbon in the Ochrophyta other than diatoms (vol 372, 20160400, 2017)', PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, vol. 373, no. 1739.
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Richier, S, Achterberg, EP, Humphreys, MP, Poulton, AJ, Suggett, DJ, Tyrrell, T & Moore, CM 2018, 'Geographical CO2 sensitivity of phytoplankton correlates with ocean buffer capacity.', Global Change Biology, vol. 24, no. 9, pp. 4438-4452.
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Ritchie, RJ, Larkum, AWD & Ribas, I 2018, 'Could photosynthesis function on Proxima Centauri b?', International Journal of Astrobiology, vol. 17, no. 2, pp. 147-176.
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Ruvindy, R, Bolch, CJ, MacKenzie, L, Smith, KF & Murray, SA 2018, 'qPCR Assays for the Detection and Quantification of Multiple Paralytic Shellfish Toxin-Producing Species of Alexandrium.', Frontiers in microbiology, vol. 9.
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Sablok, G, Hayward, RJ, Davey, PA, Santos, RP, Schliep, M, Larkum, A, Pernice, M, Dolferus, R & Ralph, PJ 2018, 'SeagrassDB: An open-source transcriptomics landscape for phylogenetically profiled seagrasses and aquatic plants', SCIENTIFIC REPORTS, vol. 8.
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Schrameyer, V, York, PH, Chartrand, K, Ralph, PJ, Kühl, M, Brodersen, KE & Rasheed, MA 2018, 'Contrasting impacts of light reduction on sediment biogeochemistry in deep- and shallow-water tropical seagrass assemblages (Green Island, Great Barrier Reef).', Marine environmental research, vol. 136, pp. 38-47.
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Segecova, A, Cerveny, J & Roitsch, T 2018, 'Advancement of the cultivation and upscaling of photoautotrophic suspension cultures using Chenopodium rubrum as a case study', PLANT CELL TISSUE AND ORGAN CULTURE, vol. 135, no. 1, pp. 37-51.
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Seymour, JR & Raina, J-B 2018, 'Swimming in the sea: chemotaxis by marine bacteria', Microbiology Australia, vol. 39, no. 1, pp. 12-16.
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Siboni, NH, Schluck, J, Pierz, K, Schumacher, HW, Kazazis, D, Horbach, J & Heinzel, T 2018, 'Nonmonotonic Classical Magnetoconductivity of a Two-Dimensional Electron Gas in a Disordered Array of Obstacles.', Physical review letters, vol. 120, no. 5.
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Sonderholm, M, Koren, K, Wangpraseurt, D, Jensen, PO, Kolpen, M, Kragh, KN, Bjarnsholt, T & Kuehl, M 2018, 'Tools for studying growth patterns and chemical dynamics of aggregated Pseudomonas aeruginosa exposed to different electron acceptors in an alginate bead model', NPJ BIOFILMS AND MICROBIOMES, vol. 4.
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Sutherland, DL, Heubeck, S, Park, J, Turnbull, MH & Craggs, RJ 2018, 'Seasonal performance of a full-scale wastewater treatment enhanced pond system', WATER RESEARCH, vol. 136, pp. 150-159.
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Tamburic, B, Evenhuis, CR, Crosswell, JR & Ralph, PJ 2018, 'An empirical process model to predict microalgal carbon fixation rates in photobioreactors', Algal Research, vol. 31, pp. 334-346.
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Tian, C, Doblin, MA, Dafforn, KA, Johnston, EL, Pei, H & Hu, W 2018, 'Dinoflagellate cyst abundance is positively correlated to sediment organic carbon in Sydney Harbour and Botany Bay, NSW, Australia.', Environmental science and pollution research international, vol. 25, no. 6, pp. 5808-5821.
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Tian, C, Hao, D, Pei, H, Doblin, MA, Ren, Y, Wei, J & Feng, Y 2018, 'Phytoplankton Functional Groups Variation and Influencing Factors in a Shallow Temperate Lake', WATER ENVIRONMENT RESEARCH, vol. 90, no. 6, pp. 510-519.
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Trampe, E, Koren, K, Akkineni, AR, Senwitz, C, Krujatz, F, Lode, A, Gelinsky, M & Kühl, M 2018, 'Functionalized Bioink with Optical Sensor Nanoparticles for O2 Imaging in 3D-Bioprinted Constructs', Advanced Functional Materials, vol. 28, no. 45.
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Trevathan‐Tackett, SM, Caitlin Wessel, Just Cebrián, Peter J. Ralph, Pere Masqué & Peter I. Macreadie 2018, 'Effects of small‐scale, shading‐induced seagrass loss on blue carbon storage: Implications for management of degraded seagrass ecosystems', The Journal of Applied Ecology, vol. 55, no. 3, pp. 1351-1359.
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Trevathan-Tackett, SM, Thomson, ACG, Ralph, PJ & Macreadie, PI 2018, 'Fresh carbon inputs to seagrass sediments induce variable microbial priming responses.', Science of the Total Environment, vol. 621, pp. 663-669.
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Tschitschko, B, Erdmann, S, DeMaere, MZ, Roux, S, Panwar, P, Allen, MA, Williams, TJ, Brazendale, S, Hancock, AM, Eloe-Fadrosh, EA & Cavicchioli, R 2018, 'Genomic variation and biogeography of Antarctic haloarchaea.', Microbiome, vol. 6, no. 1, pp. 113-113.
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Unnikrishnan, A, Vo, ANQ, Pickford, R, Raftery, MJ, Nunez, AC, Verma, A, Hesson, LB & Pimanda, JE 2018, 'AZA-MS: a novel multiparameter mass spectrometry method to determine the intracellular dynamics of azacitidine therapy in vivo.', Leukemia, vol. 32, no. 4, pp. 900-910.
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Valderrama Ballesteros, L, Matthews, JL & Hoeksema, BW 2018, 'Pollution and coral damage caused by derelict fishing gear on coral reefs around Koh Tao, Gulf of Thailand', Marine Pollution Bulletin, vol. 135, pp. 1107-1116.
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van de Water, JAJM, Chaib De Mares, M, Dixon, GB, Raina, J-B, Willis, BL, Bourne, DG & van Oppen, MJH 2018, 'Antimicrobial and stress responses to increased temperature and bacterial pathogen challenge in the holobiont of a reef-building coral.', Molecular ecology, vol. 27, no. 4, pp. 1065-1080.
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Varkey, D, Mazard, S, Jeffries, T, Hughes, D, Seymour, J, Paulsen, IT & Ostrowski, M 2018, 'Stormwater influences phytoplankton assemblages within the diverse, but impacted Sydney Harbour estuary', PLoS ONE, vol. 13, no. 12, pp. e0209857-e0209857.
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Vavitsas, K, Fabris, M & Vickers, CE 2018, 'Terpenoid Metabolic Engineering in Photosynthetic Microorganisms.', Genes, vol. 9, no. 11.
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Vuppaladadiyam, AK, Yao, JG, Florin, N, George, A, Wang, X, Labeeuw, L, Jiang, Y, Davis, RW, Abbas, A, Ralph, P, Fennell, PS & Zhao, M 2018, 'Impact of Flue Gas Compounds on Microalgae and Mechanisms for Carbon Assimilation and Utilization.', ChemSusChem, vol. 11, no. 2, pp. 334-355.
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Watanabe, S, Kuzhiumparambil, U & Fu, S 2018, 'In vitro metabolism of synthetic cannabinoid AM1220 by human liver microsomes and Cunninghamella elegans using liquid chromatography coupled with high resolution mass spectrometry', FORENSIC TOXICOLOGY, vol. 36, no. 2, pp. 435-446.
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Watanabe, S, Kuzhiumparambil, U & Fu, S 2018, 'Structural Elucidation of Metabolites of Synthetic Cannabinoid UR-144 by Cunninghamella elegans Using Nuclear Magnetic Resonance (NMR) Spectroscopy.', The AAPS journal, vol. 20, no. 2.
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White, RA, Wong, HL, Ruvindy, R, Neilan, BA & Burns, BP 2018, 'Viral communities of Shark Bay modern stromatolites', Frontiers in Microbiology, vol. 9, no. JUN.
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Wu, J, Kobayashi, H, Stark, SC, Meng, R, Guan, K, Tran, NN, Gao, S, Yang, W, Restrepo-Coupe, N, Miura, T, Oliviera, RC, Rogers, A, Dye, DG, Nelson, BW, Serbin, SP, Huete, AR & Saleska, SR 2018, 'Biological processes dominate seasonality of remotely sensed canopy greenness in an Amazon evergreen forest.', New Phytologist, vol. 217, no. 4, pp. 1507-1520.
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Ye, J, Perez, PG, Zhang, R, Nielsen, S, Huang, D & Thomas, T 2018, 'Effects of different C/N ratios on bacterial compositions and processes in an organically managed soil', BIOLOGY AND FERTILITY OF SOILS, vol. 54, no. 1, pp. 137-147.
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Zavřel, T, Szabó, M, Tamburic, B, Evenhuis, C, Kuzhiumparambil, U, Literáková, P, Larkum, AWD, Raven, JA, Červený, J & Ralph, PJ 2018, 'Effect of carbon limitation on photosynthetic electron transport in Nannochloropsis oculata.', Journal of photochemistry and photobiology. B, Biology, vol. 181, pp. 31-43.
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Zhang, X, Wang, N, Xie, Z, Ma, X & Huete, A 2018, 'Water loss due to increasing planted vegetation over the Badain Jaran Desert, China', Remote Sensing, vol. 10, no. 1.
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Conferences

Ajani, P, Larsson, M, Rubio, A, Bush, S, Brett, S, Woodcock, S, Farrell, H & Murray, S 2018, 'Modelling harmful algal blooms in the Hawkesbury River, Australia (Oral Presentation)', Australian Shellfish Quality Assurance Advisory Committee Science Day, UTS.

Ajani, PA, Larsson, M, Rubio, A, Bush, S, Brett, S, Woodcock, S, Farrell, H & Murray, S 2018, 'Modelling harmful algal blooms in the Hawkesbury River, Australia (Oral Presentation)', Estuarine and Coastal Science Association Conference, Perth, WA.

Barua, A, Ajani, P & Murray, S 2018, 'Diversity of Alexandrium species in Hawkesbury River (Poster Presentation)', Estuarine and Coastal Science Association Conference, Perth. WA.

Bhullar, K, Thevarajah, J, Rebmann, A, Cheevers, S, Wuhrer, R, Castignolles, P & Gaborieau, M 2018, 'Characterisation of industrial adhesives with (solid-state) NMR spectroscopy', ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 255th National Meeting and Exposition of the American-Chemical-Society (ACS) - Nexus of Food, Energy, and Water, AMER CHEMICAL SOC, New Orleans, LA.

Chia, Q, Brown, P, Labeeuw, L, Bajada, C, Ghannam, S, Pham, H, Wright, A & Ralph, P 2018, 'Comparing alternative algal cultivation systems for biodiesel production by utilizing an integrated model of sustainability', 17th Australasian - Centre for Social and Environmental Accounting Research Conference, Melbourne.

Coade, P, Rubio, A, Ajani, PA & Murray, S 2018, 'Local government requirements for managing estuarine algal blooms (Oral Presentation).', Estuarine and Coastal Science Association Conference (ESCA57), Perth, WA.

de Lima Ribeiro, A, Ajani, PA, Derkenne, C, Artlett, C & Pask, H 2018, 'Fluorescence impact on raman remote sensing of water temperature', International Conference for Southern Hemisphere Meteorology and Oceanography, Sydney, Australia.

Farrell, H, Webster, G, Baker, P, Zammit, A, Ajani, PA, Murray, S & Brett, S 2018, 'Developing phytoplankton and biotoxin risk assessments for both shellfish aquaculture and wild harvest shellfish in New South Wales (Oral Presentation)', Australian Shellfish Quality Assurance Advisory Committee Science Day, UTS.

Mottus, M, Aalto, J, Aragao, L, Back, J, Hernandez-Clemente, R, Maeda, EE, Markiet, V, Nichol, CJ, Oliveira, RC, Restrepo-Coupe, N & Saleska, SR 2018, 'Implications of Diurnal Changes in Leaf PRI on Remote Measurements of Light Use Efficiency', IGARSS 2018 - 2018 IEEE International Geoscience and Remote Sensing Symposium, 38th IEEE International Geoscience and Remote Sensing Symposium (IGARSS), IEEE, Valencia, Spain, pp. 9007-9010.
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Murray, S, Verma, A, Ajani, P, Zammit, A, Farrell, H, Palanisami, S & O'Connor, W 2018, 'Building profitability and sustainability in the NSW oyster industry (Oral Presentation)', Australian Shellfish Quality Assurance Advisory Committee Science Day, UTS.

Thevarajah, J, van Leeuwen, M, Heuls, M, Rouilly, A, Ward, R, Gilbert, E, Graf, R, Castignolles, P & Gaborieau, M 2018, 'Insights into the heterogeneity of polysaccharides with solid-state NMR spectroscopy', ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 255th National Meeting and Exposition of the American-Chemical-Society (ACS) - Nexus of Food, Energy, and Water, AMER CHEMICAL SOC, New Orleans, LA.

Verma, A, Kohli, G, Hoppenrath, M, Harwood, T, Kuzhiumparambil, U, Ralph, P & Murray, S 2016, 'Systematics and diversity of the genus Ostreopsis in the East Australian Current region', Marine and Fresh-Water Harmful Algae. Proceedings of the 17th International Conference on Harmful Algae., International Conference on Harmful Algae, International Society for Study of Harmful Algae, Brazil, pp. 84-88.
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Reports

Kennedy, P & Sutherland, DL 2018, Assessment of effects of proposed infrastructure development for AC36 on the nearshore marine environment in the Port of Auckland, Auckland, New Zealand.

Ruvindy, R, Ajani, PA & Murray, S 2018, Microalgal Community Composition Assessment in Warringah Lagoons 2017-2018. A report to Warringah Council, August 2018., pp. 1-29, Sydney, Australia.
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Sutherland, DL 2018, Assessment of effects of brewery wastewater discharge on the instream aquatic environment, Christchurch, New Zealand.

Sutherland, DL 2018, Cyanobacteria management in Pegasus Lake, Christchurch, New Zealand.

Sutherland, DL 2018, Environmental management plan for proposed mine closure, Christchurch, New Zealand.

Sutherland, DL 2018, Water quality parameters and the proposed Northland Regional Plan, Statement of Evidence, Christchurch, NZ.

Non traditional outputs

Ralph, P, de Beyer, L & Hardtke, L 2018, 'Living Lights', Vivid Sydney.
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Other

Ashworth, J & Ralph, P 2018, 'An explorable public transcriptomics compendium for eukaryotic microalgae'.
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Wilkinson, SJ & Ralph, P 2018, 'Algae Building Technology: Is it the Next Sustainable Technology?', Australia, pp. 31-36.