Aktan, F, Henness, S, Roufogalis, BD & Ammit, AJ 2003, 'Gypenosides derived from Gynostemma pentaphyllum suppress NO synthesis in murine macrophages by inhibiting iNOS enzymatic activity and attenuating NF-κB-mediated iNOS protein expression', Nitric Oxide, vol. 8, no. 4, pp. 235-242.
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Ammit, AJ & Panettieri, RA 2003, 'Airway smooth muscle cell hyperplasia: a therapeutic target in airway remodeling in asthma?', Prog Cell Cycle Res, vol. 5, pp. 49-57.
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Severe asthma is characterized by airway remodeling due, in part, to increases in airway smooth muscle (ASM) mass. Regulation of ASM hyperplasia is considered an attractive therapeutic target for the potential treatment of airway remodeling in asthma. In order to develop anti-remodeling drugs, researchers have utilized cell culture techniques to elucidate the cellular and molecular mechanisms underlying ASM cell proliferation and to identify the critical cell cycle events that regulate ASM cell growth. Attractive lead compounds that have emerged from in vitro studies can now be examined in new animal models of airway remodeling, thus providing tools to design novel therapies to prevent or abrogate airway remodeling.
Apanasovich, TV, Sheather, S, Lupton, JR, Popovic, N, Turner, ND, Chapkin, RS, Braby, LA & Carroll, RJ 2003, 'Testing for Spatial Correlation in Nonstationary Binary Data, with Application to Aberrant Crypt Foci in Colon Carcinogenesis', Biometrics, vol. 59, no. 4, pp. 752-761.
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Arntzen, CJ, Coghlan, A, Johnson, B, Peacock, J & Rodemeyer, M 2003, 'GM crops: science, politics and communication', Nature Reviews Genetics, vol. 4, no. 10, pp. 839-843.
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Asatryan, AA, Busch, K, McPhedran, RC, Botten, LC, de Sterke, CM & Nicorovici, NA 2003, 'Two-dimensional Green tensor and local density of states in finite-sized two-dimensional photonic crystals', WAVES IN RANDOM MEDIA, vol. 13, no. 1, pp. 9-25.
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Asatryan, AA, Robinson, PA, McPhedran, RC, Botten, LC, de Sterke, CM, Langtry, TL & Nicorovici, NA 2003, 'Diffusion and anomalous diffusion of light in two-dimensional photonic crystals', PHYSICAL REVIEW E, vol. 67, no. 3, pp. 1-8.
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Asatryan, AA, Robinson, PA, McPhedran, RC, Botten, LC, Martijn de Sterke, C, Langtry, TL & Nicorovici, NA 2003, 'Diffusion and anomalous diffusion of light in two-dimensional photonic crystals', Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 67, no. 3 2.
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The transport velocity vE/c introduced by Brillouin was calculated from first principles for a random medium with an intermediate filling fraction f=0.5. It was found that the transport velocity of light vE in ordered finite-size photonic crystals can be substantially lower than the free space value for a gap wavelength. The effects of the disorder on the transport velocity were also considered and it was shown that vE/c can be more than 15 times less than in free space, which was in agreement with the experimental results reported.
Ashmore, J, Bishop, R, Craig, DC & Scudder, ML 2003, 'Comparison of the X-ray structures of concomitant pseudodimorphs formed between a diquinoline host and d-chloroform guest', Mendeleev Communications, vol. 13, no. 3, pp. 144-146.
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Asselberghs, I, Clays, K, Persoons, A, McDonagh, AM, Ward, MD & McCleverty, JA 2003, 'In situ reversible electrochemical switching of the molecular first hyperpolarizability', Chemical Physics Letters, vol. 368, no. 3-4, pp. 408-411.
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In situ reversible electrochemical switching of the molecular second-order nonlinear optical (NLO) polarizability, or first hyperpolarizability, has been implemented in a specially designed cell. The redox-switchable NLO chromophore is based on the octamethylferrocene/octamethylferrocenium redox system as electron-donor (D) group, in conjunction with nitrothiophene as the electron-acceptor (A) group and ethenyl as the ?-conjugation bridge. This D?A chromophore has been shown to exhibit reversible redox switching of its linear and nonlinear optical properties. The importance and potential of this electrochemical switching of the first hyperpolarizability is discussed in the context of current and future applications of second-order NLO effects.
Bancroft, L 2003, 'Dietary fish oil reduces oxidative DNA damage in rat colonocytes', Free Radical Biology and Medicine, vol. 35, no. 2, pp. 149-159.
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Bartels, SJ, Clark, RE, Peacock, WJ, Dums, AR & Pratt, SI 2003, 'Medicare and Medicaid Costs for Schizophrenia Patients by Age Cohort Compared With Costs for Depression, Dementia, and Medically Ill Patients', American Journal of Geriatric Psychiatry, vol. 11, no. 6, pp. 648-657.
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Objective: The authors describe per-capita Medicaid and Medicare expenditures across age cohorts for individuals with schizophrenia and compare expenditures for patients with schizophrenia and those with depression, dementia, and non-psychiatric medical disorders. Methods: Medicaid and Medicare claims were identified for dually-eligible beneficiaries ages 19+ in New Hampshire during 1999 (schizophrenia: N = 1,423; depression: N = 2,219; dementia: N = 1,942; medical disorders alone: N = 4,260). Annual per-capita weighted average expenditures were calculated for inpatient, outpatient, home-health, nursing home, pharmacy, physician, and other services. Results: The greatestper-capita expenditures for individuals with schizophrenia were among older beneficiaries ($39,154 for ages 65-74 and $43,461 for ages 75+), versus younger beneficiaries ($25,633 for ages 19-44 and $31,529 for ages 45-64). Outpatient services were the highest expenditure among younger adults (ages 19-64), whereas nursing home services were the highest expenditure for ages 65+. Total expenditures for individuals with schizophrenia exceeded those for individuals with depression, dementia, or medical disorders across all age cohorts except age 45-64, where dementia expenditures were highest. Among individuals age 65-74, per-capita expenditures for schizophrenia were $11,304 higher than for depression and $28,256 higher than for medical disorders. Conclusion: Schizophrenia is one of the most expensive disorders across the adult lifespan, and expenditures increase across age cohorts. Effective interventions are needed that improve independent functioning in older age, in conjunction with innovative models of home- and community-based services that decrease high use of and expenditures for nursing homes.
Belli, S, Wallach, M, Luxford, C, Davies, MJ & Smith, NC 2003, 'Roles of tyrosine-rich precursor glycoproteins and dityrosine-/DOPA-mediated protein crosslinking in oocyst wall assembly in the coccidian parasite, Eimeria maxima', Eukaryotic Cell, vol. 2, no. 3, pp. 456-464.
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The oocyst wall of apicomplexan parasites protects them from the harsh external environment, preserving their survival prior to transmission to the next host. If oocyst wall formation could be disrupted, then logically, the cycle of disease transmission could be stopped, and strategies to control infection by several organisms of medical and veterinary importance such as Eimeria, Plasmodium, Toxoplasma, Cyclospora, and Neospora could be developed. Here, we show that two tyrosine-rich precursor glycoproteins, gam56 and gam82, found in specialized organelles (wall-forming bodies) in the sexual stage (macrogamete) of Eimeria maxima are proteolytically processed into smaller glycoproteins, which are then incorporated into the developing oocyst wall. The identification of high concentrations of dityrosine and 3,4-dihydroxyphenylalanine (DOPA) in oocyst extracts by high-pressure liquid chromatography, together with the detection of a UV autofluorescence in intact oocysts, implicates dityrosine- and possibly DOPA-protein cross-links in oocyst wall hardening. In addition, the identification of peroxidase activity in the wall-forming bodies of macrogametes supports the hypothesis that dityrosine- and DOPA-mediated cross-linking might be an enzyme-catalyzed event. As such, the mechanism of oocyst wall formation in Eimeria, is analogous to the underlying mechanisms involved in the stabilization of extracellular matrices in a number of organisms, widely distributed in nature, including insect
Belli, SI, Wallach, MG & Smith, NC 2003, 'Cloning and characterization of the 82 kDa tyrosine-rich sexual stage glycoprotein, GAM82, and its role in oocyst wall formation in the apicomplexan parasite, Eimeria maxima', Gene, vol. 307, pp. 201-212.
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Belli, SI, Wallach, MG, Luxford, C, Davies, MJ & Smith, NC 2003, 'Roles of Tyrosine-Rich Precursor Glycoproteins and Dityrosine- and 3,4-Dihydroxyphenylalanine-Mediated Protein Cross-Linking in Development of the Oocyst Wall in the Coccidian Parasite Eimeria maxima', Eukaryotic Cell, vol. 2, no. 3, pp. 456-464.
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ABSTRACT
The oocyst wall of apicomplexan parasites protects them from the harsh external environment, preserving their survival prior to transmission to the next host. If oocyst wall formation could be disrupted, then logically, the cycle of disease transmission could be stopped, and strategies to control infection by several organisms of medical and veterinary importance such as
Eimeria
,
Plasmodium
,
Toxoplasma
,
Cyclospora
, and
Neospora
could be developed. Here, we show that two tyrosine-rich precursor glycoproteins, gam56 and gam82, found in specialized organelles (wall-forming bodies) in the sexual stage (macrogamete) of
Eimeria maxima
are proteolytically processed into smaller glycoproteins, which are then incorporated into the developing oocyst wall. The identification of high concentrations of dityrosine and 3,4-dihydroxyphenylalanine (DOPA) in oocyst extracts by high-pressure liquid chromatography, together with the detection of a UV autofluorescence in intact oocysts, implicates dityrosine- and possibly DOPA-protein cross-links in oocyst wall hardening. In addition, the identification of peroxidase activity in the wall-forming bodies of macrogametes supports the hypothesis that dityrosine- and DOPA-mediated cross-linking might be an enzyme-catalyzed event. As such, the mechanism of oocyst wall formation in
Eimeria
, is analogous to the underlying mechanisms involved in the stabilization of extracellular matrices in a number of organisms, widely distributed in nature, including insect resilin, nematode cuticles, yeast cell walls, mussel byssal thre...
Benn, DE, Croxson, MS, Tucker, K, Bambach, CP, Richardson, AL, Delbridge, L, Pullan, PT, Hammond, J, Marsh, DJ & Robinson, BG 2003, 'Novel succinate dehydrogenase subunit B (SDHB) mutations in familial phaeochromocytomas and paragangliomas, but an absence of somatic SDHB mutations in sporadic phaeochromocytomas', Oncogene, vol. 22, no. 9, pp. 1358-1364.
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Ben-Nissan, B 2003, 'Natural bioceramics: from coral to bone and beyond', Current Opinion in Solid State and Materials Science, vol. 7, no. 4-5, pp. 283-288.
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Berry, DJ, Beran, RG, Plunkeft, MJ, Clarke, LA & Hung, WT 2003, 'The absorption of gabapentin following high dose escalation', SEIZURE-EUROPEAN JOURNAL OF EPILEPSY, vol. 12, no. 1, pp. 28-36.
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Bettelheim, KA, Hornitzky, MA, Djordjevic, SP & Kuzevski, A 2003, 'Antibiotic resistance among verocytotoxigenic Escherichia coli (VTEC) and non-VTEC isolated from domestic animals and humans', Journal of Medical Microbiology, vol. 52, no. 2, pp. 155-162.
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Two hundred verocytotoxigenic and 216 non-verocytotoxigenic Escherichia coli (VTEC and non-VTEC), isolated from a variety of sources were tested for their resistances to 11 antimicrobial agents. The strains included isolates from domestic food animals and both symptomatic and asymptomatic infections in man. A much higher level of resistance was found among the non-VTEC than among the VTEC, regardless of source. The resistant VTEC isolated from animals were predominantly from specimens associated with sick animals. Antibiotic resistance was detected in only four of the 59 (6.8 %) VTEC of human origin, whereas more of the human non-VTEC possessed antibiotic resistance determinants. It was particularly noteworthy that 24/87 (28 %) strains isolated from healthy babies, who had neither contact with antibiotics nor had gastrointestinal symptoms for at least 2 weeks prior to the specimen being taken, were resistant to one or more of the antibiotics tested.
Bibby, TS, Nield, J, Chen, M, Larkum, AWD & Barber, J 2003, 'Structure of a photosystem II supercomplex isolated from Prochloron didemni retaining its chlorophyll a/b light-harvesting system', Proceedings of the National Academy of Sciences, vol. 100, no. 15, pp. 9050-9054.
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Prochlorophytes are a class of cyanobacteria that do not use
phycobiliproteins as light-harvesting systems, but contain chlorophyll (Chl)
a
/
b
-binding Pcb proteins. Recently it was shown that Pcb
proteins form an 18-subunit light-harvesting antenna ring around the
photosystem I (PSI) trimeric reaction center complex of the prochlorophyte
Prochlorococcus marinus
SS120. Here we have investigated whether the
symbiotic prochlorophyte
Prochloron didemni
also contains the same
supermolecular complex. Using cells isolated directly from its ascidian host,
we found no evidence for the presence of the Pcb–PSI supercomplex.
Instead we have identified and characterized a supercomplex composed of
photosystem II (PSII) and Pcb proteins. We show that 10-Pcb subunits associate
with the PSII dimeric reaction center core to form a giant complex having an
estimated
M
r
of 1,500 kDa with dimensions of 210 ×
290 Å. Five-Pcb subunits flank each long side of the dimer and assuming
each binds 13 Chl molecules, increase the antenna size of PSII by ≈200%.
Fluorescence emission studies indicate that energy transfer occurs efficiently
from the Pcb antenna. Modeling using the x-ray structure of cyanobacterial
PSII suggests that energy transfer to the PSII reaction center is via the Chls
bound to the CP47 and CP43 proteins.
Bilic, A, Reimers, JR & Hush, NS 2003, 'Modeling the adsorption of norbornadiene on the Si(001) surface: The predominance of non-[2+2]-cycloaddition products', JOURNAL OF CHEMICAL PHYSICS, vol. 119, no. 2, pp. 1115-1126.
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Binstead, RA, Reimers, JR & Hush, NS 2003, 'Inter-porphyrin coupling: rotation-modulation of inter-ring coupling in a mu-oxo-silicon phthalocyanine dimer', CHEMICAL PHYSICS LETTERS, vol. 378, no. 5-6, pp. 654-659.
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Blann, K, Williams, DBG, Roodt, A & Muller, A 2003, '(1R*,5R*,6S*,7R*)-6,7-Dihydroxy-6-hydroxymethyl-2-oxabicyclo[3.2.0]heptan-3-one', Acta Crystallographica Section E Structure Reports Online, vol. 59, no. 10, pp. o1551-o1553.
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Boggs, PB 2003, 'Bed Covers and Dust Mites', New England Journal of Medicine, vol. 349, no. 17, pp. 1668-1671.
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Botten, LC, Asatryan, AA, Langtry, TN, White, TP, de Sterke, CM & McPhedran, RC 2003, 'Semianalytic treatment for propagation in finite photonic crystal waveguides', OPTICS LETTERS, vol. 28, no. 10, pp. 854-856.
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e present a semianalytic theory for the properties of two-dimensional photonic crystal waveguides of finite length. For single-mode guides, the transmission spectrum and field intensity can be accurately described by a simple two-parameter model. Analogies are drawn with FabryPerot interferometers, and generalized Fresnel coefficients for the interfaces are calculated.
Bower, K, Djordjevic, SP, Andronicos, NM & Ranson, M 2003, 'Cell Surface Antigens of Mycoplasma Species Bovine Group 7 Bind to and Activate Plasminogen', Infection and Immunity, vol. 71, no. 8, pp. 4823-4827.
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ABSTRACT
Mycoplasma
species bovine group 7 bound plasminogen at the cell surface in a lysine-dependent manner. Cell-bound plasminogen was rapidly activated to plasmin by exogenous urokinase, and this activity was associated with plasminogen binding capacity. Binding assays using plasminogen modified with a trifunctional cross-linking agent revealed several binding proteins.
Bretelle, F, Sabatier, F, Desprez, D, Camoin, L, Grunebaum, L, Combes, V, D’Ercole, C & Dignat-George, F 2003, 'Circulating microparticles: a marker of procoagulant state in normal pregnancy and pregnancy complicated by preeclampsia or intrauterine growth restriction', Thrombosis and Haemostasis, vol. 89, no. 03, pp. 486-492.
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SummaryIn the present study, we explored the microparticles involved in the control of hemostatic equilibrium, i.e microparticles originating from platelet, endothelial cells and total MP defined as annexin V positive microparticles. Our aim was to analyze the level and procoagulant activity of these microparticles in normal pregnancy and pregnancies complicated with preeclampsia or isolated intrauterine growth restriction. We reported increased levels of platelet and endothelial microparticles in normal pregnancy compared to non pregnant healthy women. Number of annexin V microparticles was significantly increased together with their procoagulant activity. In pathological pregnancies, significant reduction in platelet microparticle number was found in preeclampsia. The procoagulant activity generated by the total annexin V MP was unchanged, suggesting that the microparticles remaining in the circulation were pro-coagulant. This study evidenced that microparticles constitute a cellular marker of a proinflammatory and procoagulant responses in normal pregnancy. In pregnancies with vascular complications, circulating MP with procoagulant potential may be part of the exacerbation of these responses.
Brett, KN, Hornitzky, MA, Bettelheim, KA, Walker, MJ & Djordjevic, SP 2003, 'Bovine Non-O157 Shiga Toxin 2-Containing Escherichia coli Isolates Commonly Possess stx 2-EDL933 and/or stx 2vhb Subtypes', Journal of Clinical Microbiology, vol. 41, no. 6, pp. 2716-2722.
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ABSTRACT
stx
2
genes from 138 Shiga toxin-producing
Escherichia coli
(STEC) isolates, of which 127 were of bovine origin (58 serotypes) and 11 of human origin (one serotype; O113:H21), were subtyped. The bovine STEC isolates from Australian cattle carried
ehxA
and/or
eaeA
and predominantly possessed
stx
2-EDL933
(103 of 127; 81.1%) either in combination with
stx
2vhb
(32 of 127; 25.2%) or on its own (52 of 127; 40.4%). Of 22 (90.9%) bovine isolates of serotype O113:H21, a serotype increasingly recovered from patients with hemolytic uremic syndrome (HUS) or hemorrhagic colitis, 20 contained both
stx
2-EDL933
and
stx
2vhb
; 2 isolates contained
stx
2vhb
only. Although 7 of 11 (63.6%) human O113:H21 isolates associated with diarrhea possessed
stx
2-EDL933
, the remaining 4 isolates possessed a combination of
stx
2-EDL933
and
stx
2vhb
. Three of the four were from separate sporadic cases of HUS, and one was from an unknown source.
Brett, KN, Ramachandran, V, Hornitzky, MA, Bettelheim, KA, Walker, MJ & Djordjevic, SP 2003, 'stx 1c Is the Most Common Shiga Toxin 1 Subtype among Shiga Toxin-Producing Escherichia coli Isolates from Sheep but Not among Isolates from Cattle', Journal of Clinical Microbiology, vol. 41, no. 3, pp. 926-936.
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ABSTRACT
Unlike Shiga toxin 2 (
stx
2
) genes, most nucleotide sequences of Shiga toxin 1 (
stx
1
) genes from Shiga toxin-producing
Escherichia coli
(STEC),
Shigella dysenteriae
, and several bacteriophages (H19B, 933J, and H30) are highly conserved. Consequently, there has been little incentive to investigate variants of
stx
1
among STEC isolates derived from human or animal sources. However
stx
1OX3
, originally identified in an OX3:H8 isolate from a healthy sheep in Germany, differs from other
stx
1
subtypes by 43 nucleotides, resulting in changes to 12 amino acid residues, and has been renamed
stx
1c
. In this study we describe the development of a PCR-restriction fragment length polymorphism (RFLP) assay that distinguishes
stx
1c
from other
stx
1
subtypes. The PCR-RFLP assay was used to study 378
stx
1
-containing STEC isolates. Of these, 207 were isolated from sheep, 104 from cattle, 45 from humans, 11 from meat, 5 from swine, 5 from unknown sources, and 1 from a cattle water trough. Three hundred fifty-five of the 378 isolates (93.9%) also possessed at least ...
Brunton, BJ & Booth, DJ 2003, 'Density- and size-dependent mortality of a settling coral-reef damselfish (Pomacentrus moluccensis Bleeker)', OECOLOGIA, vol. 137, no. 3, pp. 377-384.
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Buckley, BW, Leslie, LM & Speer, MS 2003, 'The Impact of Observational Technology on Climate Database Quality: Tropical Cyclones in the Tasman Sea', Journal of Climate, vol. 16, no. 15, pp. 2640-2645.
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Bühlmann, H & Platen, E 2003, 'A Discrete Time Benchmark Approach for Insurance and Finance', ASTIN Bulletin, vol. 33, no. 02, pp. 153-172.
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This paper proposes a consistent approach to discrete time valuation in insurance and finance. This approach uses the growth optimal portfolio as reference unit or benchmark. When used as benchmark, it is shown that all benchmarked price processes are supermartingales. Benchmarked fair price processes are characterized as martingales. No measure transformation is needed for the fair pricing of insurance policies and derivatives. The standard actuarial pricing rule is obtained as a particular case of fair pricing when the contingent claim is independent from the growth optimal portfolio.
1991 Mathematics Subject Classification: primary 90A12 secondary 60G30, 62P20
JEL Classification: G10, G13
Burger, F, Doble, P & Roux, C 2003, 'Forensic analysis of condom and personal lubricants found in sexual assault cases by capillary electrophoresis', FORENSIC SCIENCE INTERNATIONAL, vol. 136, pp. 247-247.
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NA
Butt, AJ, Dickson, KA, McDougall, F & Baxter, RC 2003, 'Insulin-like Growth Factor-binding Protein-5 Inhibits the Growth of Human Breast Cancer Cells in Vitro and in Vivo', Journal of Biological Chemistry, vol. 278, no. 32, pp. 29676-29685.
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The role of insulin-like growth factor-binding protein (IGFBP)-5 in human breast cancer cell growth is unclear. We determined the effects of IGFBP-5 expression on the growth of human breast cancer cell lines in vivo and in vitro. Expression of IGFBP-5, both by stable transfection and adenoviral-mediated infection, was inhibitory to the growth of MDA-MB-231 and Hs578T human breast cancer cells over a 13-day period. IGFBP-5 expression resulted in a G /M cell cycle arrest and the induction of apoptosis in both cell lines, an effect that was abrogated in the presence of the broad-spectrum caspase inhibitor, z-VAD-fmk. IGFBP-5-induced apoptosis was associated with a transcriptional increase in expression of the proapoptotic regulator bax and decrease in the anti-apoptotic bcl-2 compared with vector controls. Secreted IGFBP-5 when added exogenously to breast cancer cells was not internalized and had no effect on cell growth or apoptosis, suggesting that IGFBP-5 may elicit its inhibitory effects via a novel, intracrine mechanism. In athymic nude mice, stable expression of IGFBP-5 significantly inhibited both the formation and growth of tumors derived from MDA-MB-231 cells. IGFBP-5-expressing tumors also had a significantly elevated level of bax mRNA and decreased levels of bcl-2 mRNA compared with vector tumors. These data suggest that IGFBP-5 is a potent growth inhibitor and proapoptotic agent in human breast cancer cells via modulation of cell cycle regulation and apoptotic mediators. 2
Caddy, J, Williams, DBG, Roodt, A & Muller, A 2003, '(1R*,5S*,6S*,7R*)-6,7-Dihydroxy-6-hydroxymethyl-2-oxabicyclo[3.2.0]heptan-3-one', Acta Crystallographica Section E Structure Reports Online, vol. 59, no. 8, pp. o1095-o1097.
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Casamento, S, Kwok, B, Roux, C, Dawson, M & Doble, P 2003, 'Optimization of the separation of organic explosives by capillary electrophoresis with artificial neural networks', JOURNAL OF FORENSIC SCIENCES, vol. 48, no. 5, pp. 1075-1083.
Cavicchioli, R, Ostrowski, M, Fegatella, F, Goodchild, A & Guixa-Boixereu, N 2003, 'Life under Nutrient Limitation in Oligotrophic Marine Environments: An Eco/Physiological Perspective of Sphingopyxis alaskensis (formerly Sphingomonas alaskensis)', Microbial Ecology, vol. 46, no. 2, pp. 249-256.
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Celedon, JC, Wright, RJ, Litonjua, AA, Sredl, D, Ryan, L, Weiss, ST & Gold, DR 2003, 'Day care attendance in early life, maternal history of asthma, and asthma at the age of 6 years', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, vol. 167, no. 9, pp. 1239-1243.
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Among children not selected on the basis of a parental history of atopy, day care attendance in early life is inversely associated with asthma at school age. We examined the relation between day care in the first year of life and asthma, recurrent wheezing, and eczema at the age of 6 years and wheezing in the first 6 years of life among 453 children with parental history of atopy followed from birth. Among all study participants, day care in the first year of life was inversely associated with eczema (odds ratio [OR] = 0.3, 95% confidence interval [CI] = 0.1-0.8). Day care attendance in early life was associated with a decreased risk of asthma (OR = 0.3, 95% CI = 0.1-0.7) and recurrent wheezing (OR = 0.3, 95% CI = 0.1-0.9) at the age of 6 years and with a decreased risk of any wheezing after the age of 4 years only among children without maternal history of asthma. Among children with maternal history of asthma, day care in early life had no protective effect on asthma or recurrent wheezing at the age of 6 years but was instead associated with an increased risk of wheezing in the first 6 years of life. Our findings suggest that maternal history of asthma influences the relation between day care-related exposures and childhood asthma.
Chan, DKY, Lam, MKP, Wong, R, Hung, WT & Wilcken, DEL 2003, 'Strong association between N-acetyltransferase 2 genotype and PD in Hong Kong Chinese', NEUROLOGY, vol. 60, no. 6, pp. 1002-1005.
Chan, DKY, Mellick, GD, Hung, WT & Woo, J 2003, 'Genetic and environmental risk factors and their interactions for Parkinson's disease in a Chinese population', JOURNAL OF CLINICAL NEUROSCIENCE, vol. 10, no. 3, pp. 313-315.
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Cheah, IK, Cheema, SS, Langford, SJ, Lopes, EC, Macfarlane, KJ, Petratos, S & Turner, BJ 2003, 'Design and application of a peptide nucleic acid sequence targeting the p75 neurotrophin receptor', Bioorganic & Medicinal Chemistry Letters, vol. 13, no. 14, pp. 2377-2380.
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Chen, JC, Chang, WR, Shih, TS, Chen, CJ, Chang, WP, Dennerlein, JT, Ryan, LM & Christiani, DC 2003, 'Predictors of whole-body vibration levels among urban taxi drivers', ERGONOMICS, vol. 46, no. 11, pp. 1075-1090.
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To identify a set of important WBV predictors that could be used to develop a statistical instrument for exposure assessment in a large epidemiologic study, a total of 432 WBV measures were taken from a sample of 247 male drivers in Taipei City, Taiwan.
Chen, YC, Guo, YLL, Su, HJJ, Hsueh, YM, Smith, TJ, Lee, MS, Chao, SC, Lee, JYY & Christiani, DC 2003, 'Arsenic methylation and skin cancer risk in southwestern Taiwan', JOURNAL OF OCCUPATIONAL AND ENVIRONMENTAL MEDICINE, vol. 45, no. 3, pp. 241-248.
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Arsenic is a known carcinogen, but data are especially lacking on the health effects of low-level exposure, and on the health significance of methylation ability. We conducted a case-control study (76 cases and 224 controls from 1996 to 1999) in southwestern Taiwan to explore the association among primary and secondary arsenic methylation index (PMI and SMI, respectively), cumulative arsenic exposure (CAE), and the risk of skin cancer. As compared with the controls, the skin cancer group reported more sun exposure (P = 0.02) and had a lower BMI (P = 0.03), as well as lower education level (P = 0.01). Skin cancer patients and controls were similar with regard to age, gender, smoking and alcohol consumption. Given a low SMI (less than or equal to5), CAE > 15 mg/L-year was associated with an increased. risk of skin cancer (OR, 7.48; 95% CI, 1.65-33.99) compared to a CAE less than or equal to2 mg/L-year. Given the same level of PMI, SMI, and CAE, men had a higher risk of skin cancer (OR, 4.04; 95% CI, 1.46-11.22) when compared to women. Subjects with low SMI and high CAE have a substantially increased risk of skin cancer. Males in all strata of arsenic exposure and methylation ability had a higher risk of skin cancer than women.
Chen, YC, Su, HJJ, Guo, YLL, Hsueh, YM, Smith, TJ, Ryan, LM, Lee, MS & Christiani, DC 2003, 'Arsenic methylation and bladder cancer risk in Taiwan', CANCER CAUSES & CONTROL, vol. 14, no. 4, pp. 303-310.
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Objective: The mechanism of arsenic detoxification in humans remains unclear. Data are especially lacking for low-level arsenic exposure. We hypothesize that arsenic methylation ability, defined as the ratios of monomethylarsonic acid (MMA(V))/inorganic
Chen, YC, Xu, LL, Guo, YLL, Su, HJJ, Hsueh, YM, Smith, TJ, Ryan, LM, Lee, MS, Chaor, SC, Lee, JYY & Christiani, DC 2003, 'Genetic polymorphism in p53 codon 72 and skin cancer in southwestern Taiwan', JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART A-TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING, vol. 38, no. 1, pp. 201-211.
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The Pro/Pro polymorphism of p53 codon 72 has been reported to be related to bladder and lung cancer, but its relationship with skin cancer is unclear. We assessed the hypothesis that there is a relationship between the p53 codon 72, Pro/Pro polymorphism, cumulative arsenic exposure, and the risk of skin cancer in a hospital-based case-control study in southwestern Taiwan. From 1996 to 1999, 93 newly-diagnosed skin cancer patients at the National Cheng-Kung University (NCKU) Hospital and 71 community controls matched on residence were recruited in southwestern Taiwan. The genotype of p53 codon 72 (Arg/Arg, Arg/Pro, or Pro/Pro) was determined for all subjects by polymerase chain reaction-restricted fragment length polymorphism (PCR-RFLP). A questionnaire was administered to each subject for collection of demographic information, personal habits, disease history, diet information, and other relevant questions. The Pro/Pro (homozygous) genotype was more frequent in skin cancer patients (cases, 20%; controls, 12%; P = 0.37). Subjects with the susceptible genotype Pro/Pro and heterozygous (intermediate) genotype Pro/Arg had 2.18 and 0.99 times risk of skin cancer than the wild type Arg/Arg (95% confidence interval, 0.74-4.38; 95% confidence interval, 0.44-2.21), respectively. Compared with subjects with 18.5 < BMI < 23, subjects with BMI > 18.5 had 5.78 times risk of skin cancer (95% confidence interval, 1.06 to 31.36) after adjusting for other risk factors. There was no interaction between BMI and genotype, but the sample size was small. The risk of skin cancer did not significantly vary by tumor cell-type. The risk of skin cancer is increased in individuals with the Pro/Pro genotype. Larger, confirmatory studies are needed to clarify the role of constitutional polymorphisms in p53 and skin cancer risk.
Chiarella, C & Platen, E 2003, 'Introduction to Selected Proceedings from Quantitative Methods in Finance 2002', Quantitative Finance, vol. 3, no. 1, pp. C5-C5.
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NA
Chiarella, C, Craddock, M & El-Hassan, N 2003, 'An implementation of Bouchouev's method for a short time calibration of option pricing models', Computational Economics, vol. 22, no. 2/3, pp. 113-138.
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Choinski, JS, Ralph, P & Eamus, D 2003, 'Changes in photosynthesis during leaf expansion in Corymbia gummifera', AUSTRALIAN JOURNAL OF BOTANY, vol. 51, no. 1, pp. 111-118.
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Choy, B, Dun, T & Schlogl, E 2003, 'Correlating Market Models', Asia Risk, vol. October, pp. 53-59.
Christian, KA, Webb, JK & Schultz, TJ 2003, 'Energetics of bluetongue lizards (Tiliqua scincoides) in a seasonal tropical environment', OECOLOGIA, vol. 136, no. 4, pp. 515-523.
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CLARKE, IC, MANAKA, M, GREEN, DD, WILLIAMS, P, PEZZOTTI, G, KIM, Y-H, RIES, M, SUGANO, N, SEDEL, L, DELAUNEY, C, NISSAN, BB, DONALDSON, T & GUSTAFSON, GA 2003, 'CURRENT STATUS OF ZIRCONIA USED IN TOTAL HIP IMPLANTS', The Journal of Bone and Joint Surgery-American Volume, vol. 85, no. 4, pp. 73-84.
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Colville, AE & Lim, RP 2003, 'Microscopic structure of the mantle and palps in the freshwater mussels Velesunio ambigus and Hyridella depressa (Bivalvia : Hyriidae)', Molluscan Research, vol. 23, no. 1, pp. 1-1.
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Contreras, JP, Ly, NP, Gold, DR, He, H, Wand, M, Weiss, ST, Perkins, DL, Platts-Mills, TAE & Finn, PW 2003, 'Allergen-induced cytokine production, atopic disease, IgE, and wheeze in children', Journal of Allergy and Clinical Immunology, vol. 112, no. 6, pp. 1072-1077.
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Cordingley, RL, Kohan, L, Ben-Nissan, B & Pezzotti, G 2003, 'Aluminia and zirconia bioceramics in orthopaedic applications', Journal of the Australasian Ceramic Society, vol. 39, no. 1, pp. 20-28.
Cortie, M 2003, 'New uses for gold in the emerging field of nanotechnology', GOLD BULLETIN, vol. 36, no. 3, pp. 74-74.
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Cranfield, C, Wieser, HG, Al Madan, J & Dobson, J 2003, 'Preliminary evaluation of nanoscale biogenic magnetite-based ferromagnetic transduction mechanisms for mobile phone bioeffects', IEEE TRANSACTIONS ON NANOBIOSCIENCE, vol. 2, no. 1, pp. 40-43.
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Cranfield, CG, Weiser, HG & Dobson, J 2003, 'Exposure of magnetic bacteria to simulated mobile phone-type RF radiation has no impact on mortality', IEEE TRANSACTIONS ON NANOBIOSCIENCE, vol. 2, no. 3, pp. 146-149.
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Crossley, MJ, Sintic, PJ, Walton, R & Reimers, JR 2003, 'Synthesis and physical properties of biquinoxalinyl bridged bis-porphyrins: models for aspects of Photosynthetic Reaction Centres', ORGANIC & BIOMOLECULAR CHEMISTRY, vol. 1, no. 15, pp. 2777-2787.
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Dalton, JP, Brindley, PJ, Knox, DP, Brady, CP, Hotez, PJ, Donnelly, S, O'Neill, SM, Mulcahy, G & Loukas, A 2003, 'Helminth vaccines: from mining genomic information for vaccine targets to systems used for protein expression', INTERNATIONAL JOURNAL FOR PARASITOLOGY, vol. 33, no. 5-6, pp. 621-640.
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The control of helminth diseases of people and livestock continues to rely on the widespread use of anti-helminthic drugs. However, concerns with the appearance of drug resistant parasites and the presence of pesticide residues in food and the environmen
Dalton, JP, Neill, SO, Stack, C, Collins, P, Walshe, A, Sekiya, M, Doyle, S, Mulcahy, G, Hoyle, D, Khaznadji, E, Moire, N, Brennan, G, Mousley, A, Kreshchenko, N, Maule, AG & Donnelly, SM 2003, 'Fasciola hepatica cathepsin L-like proteases: biology, function, and potential in the development of first generation liver fluke vaccines', INTERNATIONAL JOURNAL FOR PARASITOLOGY, vol. 33, no. 11, pp. 1173-1181.
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Fasciola hepatica secretes cathepsin L proteases that facilitate the penetration of the parasite through the tissues of its host, and also participate in functions such as feeding and immune evasion. The major proteases, cathepsin L1 (FheCL1) and catheps
Dang, L, Seale, JP & Qu, X 2003, 'Protein Kinase C Inhibition Reverses High-glucose-induced Expression And Secretion Of Vascular Endothelial Growth Factor In Human Umbilical Vein Endothelial Cells.', Diabetologia, vol. 46, pp. 1-1.
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Davey, MS, Suggett, DJ, Geider, RJ & Taylor, AR 2003, 'PHYTOPLANKTON PLASMA MEMBRANE REDOX ACTIVITY: EFFECT OF IRON LIMITATION AND INTERACTION WITH PHOTOSYNTHESIS1', Journal of Phycology, vol. 39, no. 6, pp. 1132-1144.
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Phytoplankton plasma membrane electron transport activity was determined by monitoring the reduction of the impermeant artificial electron acceptor ferricyanide in a range of diatoms. The results revealed that constitutive plasma membrane electron transp
Dawson, M, Doble, P, Beavis, A, Li, LXL, Soper, R, Scolyer, RA, Uren, RF & Thompson, JF 2003, 'Antimony by ICP-MS as a marker for sentinel lymph nodes in melanoma patients', ANALYST, vol. 128, no. 3, pp. 217-219.
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A sensitive, accurate and specific method for the analysis of antimony by ICP-MS is presented as a marker of the sentinel lymph node in melanoma patients.
de Bas, BS, Dorsett, HE & Ford, MJ 2003, 'The electronic structure of Be and BeO: benchmark EMS measurements and LCAO calculations', JOURNAL OF PHYSICS AND CHEMISTRY OF SOLIDS, vol. 64, no. 3, pp. 495-505.
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The electronic band structures of Be and BeO have been measured by transmission electron momentum spectroscopy (EMS). The low atomic number of beryllium and the use of ultrathin solid films in these experiments reduce the probability of electron multiple scattering within the sample, resulting in very clean `benchmark measurements for the EMS technique. Experimental data are compared to tight-binding (LCAO) electronic structure calculations using HartreeFock , and local density (LDA-VWN), gradient corrected (PBE) and hybrid (PBE0) density functional theory. Overall, DFT calculations reproduce the EMS data for metallic Be reasonably well. PBE predictions for the valence bandwidth of Be are in excellent agreement with EMS data, provided the calculations employ a large basis set augmented with diffuse functions. For BeO, PBE calculations using a moderately sized basis set are in reasonable agreement with experiment, slightly underestimating the valence bandgap and overestimating the O(2s) and O(2p) bandwidths. The calculations also underestimate the EMS intensity of the O(2p) band around the ?-point. Simulation of the effects of multiple scattering in the calculated oxide bandstructures do not explain these systematic differences.
Dean, RT, Dunlop, R, Hume, P & Rodgers, KJ 2003, 'Proteolytic 'defences' and the accumulation of oxidized polypeptides in cataractogenesis and atherogenesis', PROTEASES AND THE REGULATION OF BIOLOGICAL PROCESSES, vol. 70, no. 1, pp. 135-146.
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Over the last few years, it has been clearly established that normal plasma contains low levels of oxidized polypeptides, and that these accumulate in tissues during several age-related pathologies. In contrast, normal mammalian aging, contrary to conven
Death, AK, Fisher, EJ, McGrath, KCY & Yue, DK 2003, 'High glucose alters matrix metalloproteinase expression in two key vascular cells: potential impact on atherosclerosis in diabetes', Atherosclerosis, vol. 168, no. 2, pp. 263-269.
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Diabetes is a major risk factor for atherosclerosis. Hyperglycemia is an underlying contributing factor; however, the mechanisms that mediate the vascular complications are not yet fully understood. In the present study, we provide evidence that elevated
Dey, A, Zhu, X, Carroll, R, Turck, CW, Stein, J & Steiner, DF 2003, 'Erratum: Biological processing of the cocaine and amphetamine-regulated transcript precursors by prohormone convertases, PC2 and PC1/3 (The Journal of Biological Chemistry (2003) 278 (15007-15014))', Journal of Biological Chemistry, vol. 278, no. 26, p. 24242.
Djordjevic, SP 2003, 'Characterization of a chromosomal region of Mycoplasma sp. bovine group 7 strain PG50 encoding a glycerol transport locus (gtsABC)', Microbiology, vol. 149, no. 1, pp. 195-204.
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Mycoplasma species bovine group 7, represented by the type strain PG50, is one of six members of the Mycoplasma mycoides cluster and has been implicated in sporadic and outbreak cases of polyarthritis and mastitis in Australian dairy cattle. This study describes cloning and sequencing a 7·9 kb region of the PG50 chromosome and identification of genes involved in glycerol transport (gtsA, gtsB and gtsC) that are followed by a putative lipoprotein gene lppB and a genomic locus containing two ORFs encoding putative membrane proteins. Long range PCR using primers spanning gtsABC and downstream flanking genes, and Southern hybridization analyses using a suite of probes derived from M. mycoides subsp. mycoides small colony type (SC) strain Afadé for gtsA, gtsB and gtsC, lppB and the two downstream genes confirmed that these genes were conserved among Mycoplasma sp. bovine group 7 isolates and mycoplasmas belonging to the M. mycoides subcluster [M. mycoides subsp. mycoides SC, M. mycoides subsp. mycoides large colony type (LC) and M. mycoides subsp. capri] but were absent in mycoplasmas belonging to the Mycoplasma capricolum subcluster (M. capricolum subsp. capricolum and M. capricolum subsp. capripneumoniae). M. capricolum subsp. capricolum type strain California kid did not hybridize with the probe for gtsA and gave only weak or no hybridization signals with probes derived from the loci downstream of gtsABC, suggesting that this region has diverged in mycoplasmas belonging to subspecies of M. capricolum.
Doble, P, Sandercock, M, Du Pasquier, E, Petocz, P, Roux, C & Dawson, M 2003, 'Classification. of premium and regular gasoline by gas chromatography/mass spectrometry, principal component analysis and artificial neural networks', FORENSIC SCIENCE INTERNATIONAL, vol. 132, no. 1, pp. 26-39.
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Detection and correct classification of gasoline is important for both arson and fuel spill investigation. Principal component analysis (PCA) was used to classify premium and regular gasolines from gas chromatographymass spectrometry (GCMS) spectral data obtained from gasoline sold in Canada over one calendar year. Depending upon the dataset used for training and tests, around 8093% of the samples were correctly classified as either premium or regular gasoline using the Mahalanobis distances calculated from the principal components scores. Only 4862% of the samples were correctly classified when the premium and regular gasoline samples were divided further into their winter/summer sub-groups. Artificial neural networks (ANNs) were trained to recognise premium and regular gasolines from the same GCMS data. The best-performing ANN correctly identified all samples as either a premium or regular grade. Approximately 97% of the premium and regular samples were correctly classified according to their winter or summer sub-group.
Dolferus, R, Klok, EJ, Delessert, C, Wilson, S, Ismond, KP, Good, AG, Peacock, WJ & Dennis, ES 2003, 'Enhancing the anaerobic response', ANNALS OF BOTANY, vol. 91, no. 2, pp. 111-117.
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Dooley, AH & Hamachi, T 2003, 'Markov odometer actions not of product type', ERGODIC THEORY AND DYNAMICAL SYSTEMS, vol. 23, pp. 813-829.
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Dooley, AH & Hamachi, T 2003, 'Nonsingular dynamical systems, Bratteli diagrams and Markov odometers', ISRAEL JOURNAL OF MATHEMATICS, vol. 138, pp. 93-123.
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Dredge, P, Wuhrer, R & Phillips, MR 2003, 'Monet's painting under the microscope', MICROSCOPY AND MICROANALYSIS, vol. 9, no. 2, pp. 139-143.
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An oil painting by Claude Monet, Port-Goulphar, Belle-Ile 1887 (collection of the Art Gallery of New South Wales), was examined to determine both the identity of the pigments used by the artist in this painting and his technique of mixing colors and laying paint on the canvas. The extremely complex construction of the painting was revealed by optical microscopy, scanning electron microscopy (SEM), energy dispersive X-ray analysis (EDS), and X-ray mapping (XRM) analysis of cross sections of paint flakes excised from damaged regions of Port-Goulphar, Belle-Ile. Nine different pigments were found on the painting. Many of the identified colors were modern pigments that became available only late in the 19th century as a result of scientific advances in pigment chemistry. Although similar colors were available in a natural mineral form, they lacked the vivid color of their manufactured counterparts. The use of these new synthetic metallic oxide colors by Monet accounts for the brilliance of his paintings. In addition, a separation between successive paint layers was observed in some areas of paint chip cross sections, indicating that oil-based paint was applied to paint that had dried, and consequently, Port-Goulphar, Belle-Ile was painted over a long period of time. This observation is contrary to the general perception of Monet's technique of painting freely and quickly.
Dufresne, A, Salanoubat, M, Partensky, F, Artiguenave, F, Axmann, IM, Barbe, V, Duprat, S, Galperin, MY, Koonin, EV, Le Gall, F, Makarova, KS, Ostrowski, M, Oztas, S, Robert, C, Rogozin, IB, Scanlan, DJ, de Marsac, NT, Weissenbach, J, Wincker, P, Wolf, YI & Hess, WR 2003, 'Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome', Proceedings of the National Academy of Sciences, vol. 100, no. 17, pp. 10020-10025.
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Prochlorococcus marinus
, the dominant photosynthetic organism in
the ocean, is found in two main ecological forms: high-light-adapted genotypes
in the upper part of the water column and low-light-adapted genotypes at the
bottom of the illuminated layer.
P. marinus
SS120, the complete
genome sequence reported here, is an extremely low-light-adapted form. The
genome of
P. marinus
SS120 is composed of a single circular
chromosome of 1,751,080 bp with an average G+C content of 36.4%. It contains
1,884 predicted protein-coding genes with an average size of 825 bp, a single
rRNA operon, and 40 tRNA genes. Together with the 1.66-Mbp genome of
P.
marinus
MED4, the genome of
P. marinus
SS120 is one of the two
smallest genomes of a photosynthetic organism known to date. It lacks many
genes that are involved in photosynthesis, DNA repair, solute uptake,
intermediary metabolism, motility, phototaxis, and other functions that are
conserved among other cyanobacteria. Systems of signal transduction and
environmental stress response show a particularly drastic reduction in the
number of components, even taking into account the small size of the SS120
genome. In contrast, housekeeping genes, which encode enzymes of amino acid,
nucleotide, cofactor, and cell wall biosynthesis, are all present. Because of
its remarkable compactness, the genome of
P. marinus
SS120 might
approximate the minimal gene complement of a photosynthetic organism.
Duty, SM, Silva, MJ, Barr, DB, Brock, JW, Ryan, L, Chen, ZY, Herrick, RF, Christiani, DC & Hauser, R 2003, 'Phthalate exposure and human semen parameters', EPIDEMIOLOGY, vol. 14, no. 3, pp. 269-277.
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Duty, SM, Singh, NP, Silva, MJ, Barr, DB, Brock, JW, Ryan, L, Herrick, RF, Christiani, DC & Hauser, R 2003, 'The relationship between environmental exposures to phthalates and DNA damage in human sperm using the neutral comet assay', ENVIRONMENTAL HEALTH PERSPECTIVES, vol. 111, no. 9, pp. 1164-1169.
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Phthalates are industrial chemicals widely used in many commercial applications. The general population is exposed to phthalates through consumer products as well as through diet and medical treatments. To determine whether environmental levels of phthalates are associated with altered DNA integrity in human sperm, we selected a population without identified sources of exposure to phthalates. One hundred sixty-eight subjects recruited from the Massachusetts General Hospital Andrology Laboratory provided a semen and a urine sample. Eight phthalate metabolites were measured in urine by using high-performance liquid chromatography and tandem mass spectrometry; data were corrected for urine dilution by adjusting for specific gravity. The neutral single-cell microgel electrophoresis assay (comet assay) was used to measure DNA integrity in sperm. VisComet image analysis software was used to measure comet extent, a measure of total comet length (micrometers); percent DNA in tail (tail%), a measure of the proportion of total DNA present in the comet tail; and tail distributed moment (TDM), an integrated measure of length and intensity (micrometers). For an interquartile range increase in specific gravityadjusted monoethyl phthalate (MEP) level, the comet extent increased significantly by 3.6 ìm [95% confidence interval (95% CI), 0.746.47]; the TDM also increased 1.2 ìm (95% CI, 0.05 to 2.38) but was of borderline significance. Monobutyl, monobenzyl, monomethyl, and mono-2-ethylhexyl phthalates were not significantly associated with comet assay parameters. In conclusion, this study represents the first human data to demonstrate that urinary MEP, at environmental levels, is associated with increased DNA damage in sperm.
Edmonson, JH, Ryan, LM, Falkson, CI, Hicks, DG & Blum, RH 2003, 'Phase II Study of Ifosfamide+Doxorubicin in Patients With Advanced Synovial Sarcomas (E1793): A Trial of the Eastern Cooperative Oncology Group', Sarcoma, vol. 7, no. 1, pp. 9-11.
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Purpose Because we had observed in the synovial sarcoma subgroup of a broad phase III advanced soft tissue sarcoma study a significantly greater objective regression rate from ifosfamide+doxorubicin (88%) than from doxorubicin alone (20%) (P = 0.02), the Eastern Cooperative Oncology Group (ECOG) decided to further assess this two drug combination in a subsequent Phase II study.Patients Between 1994 and 1999, twelve adult patients with advanced synovial sarcomas were enrolled to receive, as their initial chemotherapy, ifosfamide 7.5 gm/m2 plus doxorubicin 60 mg/m2, given intravenously over two consecutive days every 3 weeks.Methods Each day for 2 days doxorubicin 30 mg/m2 was infused over 5 min through a running i.v., followed by ifosfamide 3750 mg/m2 over 4 h. Continuous i.v. fluid was infused at 300 mL/h for 3 h on day 1, before chemotherapy was begun; then the infusion was continued at 100 mL/h for a total of 3 days. Mesna 750 mg/m2 was given 15 min before ifosfamide and at 4 and 8 h after ifosfamide on days 1 and 2 of each treatment cycle. Filgrastim (G-CSF) 5 μg/kg was given subcutaneously each day for 14 days beginning on day 3 of each treatment cyc...
Elder, M & McCammond, J 2003, 'CAT(0) is an algorithmic property', Geometriae Dedicata, vol. 107, pp. 25-46.
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In this article we give an explicit algorithm which will determine, in a
discrete and computable way, whether a finite piecewise Euclidean complex is
non-positively curved. In particular, given such a complex we show how to
define a boolean combination of polynomial equations and inequalities in real
variables, i.e. a real semi-algebraic set, which is empty if and only if the
complex is non-positively curved. Once this equivalence has been shown, the
main result follows from a standard theorem in real algebraic geometry.
Elder, M, McCammond, J & Meier, J 2003, 'Combinatorial conditions that imply word-hyperbolicity for 3-manifolds', Topology. An International Journal of Mathematics, vol. 42, pp. 1241-1259.
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Thurston conjectured that a closed triangulated 3-manifold in which every
edge has degree 5 or 6, and no two edges of degree 5 lie in a common 2-cell,
has word-hyperbolic fundamental group. We establish Thurston's conjecture by
proving that such a manifold admits a piecewise Euclidean metric of
non-positive curvature and the universal cover contains no isometrically
embedded flat planes. The proof involves a mixture of computer computation and
techniques from small cancellation theory.
Ellis, JT & Pomroy, WE 2003, 'Hammondia heydorni oocysts in the faeces of a greyhound in New Zealand', NEW ZEALAND VETERINARY JOURNAL, vol. 51, no. 1, pp. 38-39.
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Ellis, JT, Morrison, DA & Reichel, MP 2003, 'Genomics and its impact on parasitology and the potential for development of new parasite control methods', DNA AND CELL BIOLOGY, vol. 22, no. 6, pp. 395-403.
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Exline, DL, Wallace, C, Roux, C, Lennard, C, Nelson, MP & Treado, PJ 2003, 'Forensic Applications of Chemical Imaging: Latent Fingerprint Detection Using Visible Absorption and Luminescence', Journal of Forensic Sciences, vol. 48, no. 5, pp. 2002333-2002333.
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Fagerlind, MG, Rice, SA, Nilsson, P, Harlén, M, James, S, Charlton, T & Kjelleberg, S 2003, 'The Role of Regulators in the Expression of Quorum-Sensing Signals in <i>Pseudomonas aeruginosa</i>', Microbial Physiology, vol. 6, no. 2, pp. 88-100.
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Quorum-sensing systems provide <i>Pseudomonas aeruginosa</i> with a sensitive regulatory mechanism that allows for the induction of several phenotypic genes in a cell density fashion. In this work, a mathematical model of the acylated homoserine lactones regulatory network system in <i>P. aeruginosa</i> has been developed. It is the first integrated model to consider both quorum-sensing systems. The model has allowed us to disentangle the complex behavior exhibited by the system as the concentration of extracellular OdDHL is increased. At either low or high levels of extracellular OdDHL, the bacterium remains in an uninduced or induced state, respectively. At moderate levels, the behavior is characterized by several states. Here, the bacteria can switch suddenly from an uninduced to an induced phenotype in response to small changes in the concentration of extracellular OdDHL. Additionally, we have been able to address the roles of RsaL and Vfr as regulators of the quorum-sensing system. An important result from this analysis suggests that RsaL will increase the concentration of extracellular OdDHL required to induce the system, and it is a key regulator of the inhibition of the quorum-sensing system under low cell densities. Most importantly, our results suggest that Vfr has strong regulatory effects on the system as an increased affinity between the LasR/OdDHL complex, and the <i>las</i>R promoter leads to significant qualitative changes in induction patterns. We also show experimental data that demonstrate that Vfr is required for signal production in the early phase of growth, but that in the latter stages of growth, the <i>vfr</i> mutant is able to synthesize wild-type levels of signal.
Fallon, GD, Lee, MA-P & Langford, SJ 2003, 'N,N′-Bis(3-hydroxyphenyl)-1,8:4,5-naphthalenetetracarboximide dimethyl sulfoxide disolvate', Acta Crystallographica Section E Structure Reports Online, vol. 59, no. 3, pp. o328-o329.
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Ferguson, DJP, Belli, SI, Smith, NC & Wallach, MG 2003, 'The development of the macrogamete and oocyst wall in Eimeria maxima: immuno-light and electron microscopy', International Journal for Parasitology, vol. 33, no. 12, pp. 1329-1340.
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Ferreira, LG, Yoshioka, H, Huete, A & Sano, EE 2003, 'Seasonal landscape and spectral vegetation index dynamics in the Brazilian Cerrado: An analysis within the Large-Scale Biosphere-Atmosphere Experiment in Amazonia (LBA)', REMOTE SENSING OF ENVIRONMENT, vol. 87, no. 4, pp. 534-550.
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The Brazilian Cerrado biome comprises a vertically structured mosaic of grassland, shrubland, and woodland physiognomies with distinct phenology patterns. In this study, we investigated the utility of spectral vegetation indices in differentiating these physiognomies and in monitoring their seasonal dynamics. We obtained high spectral resolution reflectances, during the 2000 wet and dry seasons, over the major Cerrado types at Brasilia National Park (BNP) using the light aircraft-based Modland Quick Airborne Looks (MQUALS) package, consisting of a spectroradiometer and digital camera. Site-intensive biophysical and canopy structural measurements were made simultaneously at each of the Cerrado types including Cerrado grassland, shrub Cerrado, wooded Cerrado, Cerrado woodland, and gallery forest. We analyzed the spectral reflectance signatures, their first derivative analogs, and convolved spectral vegetation indices (VI) over all the Cerrado physiognomies.
Fischer, G, Cai, ZL, Reimers, JR & Wormell, P 2003, 'Singlet and triplet valence excited states of pyrimidine', JOURNAL OF PHYSICAL CHEMISTRY A, vol. 107, no. 17, pp. 3093-3106.
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Forbes, SL, Keegan, J, Stuart, BH & Dent, BB 2003, 'A gas chromatography-mass spectrometry method for the detection of adipocere in grave soils', EUROPEAN JOURNAL OF LIPID SCIENCE AND TECHNOLOGY, vol. 105, no. 12, pp. 761-768.
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Friolo, KH, Stuart, B & Ray, A 2003, 'Characterisation of weathering of Sydney sandstones in heritage buildings', Journal of Cultural Heritage, vol. 4, no. 3, pp. 211-220.
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"Yellow block" sandstone, a colloquial expression used for a locally quarried variety of sandstone, has made an important contribution to the cultural and architectural heritage of Australia's largest city, Sydney. The golden colour of this dimension stone adds to the attractive appearance of a number of significant landmarks of Sydney. After almost a century of exposure, the progressive decay of the natural consolidant, which is predominantly clay, is causing deterioration of many of these sandstone buildings. While in some cases partial and total replacements have been successful in the restoration work, a proper understanding of the cause of decay of the natural consolidant is necessary if a suitable consolidant is to be developed to preserve the original blocks. This paper reports the findings of a study of the weathering behaviour of the clay matrix in "yellow block" sandstones used in some of Sydney's historic buildings. Sandstone samples were investigated by the techniques of FTIR spectroscopy, X-ray diffraction, scanning electron microscopy, inductively coupled plasma-atomic emission spectroscopy (ICP-AES) and thermal analysis. The analytical results support the theory that the changes to the original kaolinite clay structure upon prolonged exposure and weathering of the sandstone blocks investigated are at least partly due to the substitution by Fe3+, for Al3+ in the octahedral sheet. (C) 2003 Editions scientifiques et medicales Elsevier SAS. All rights reserved.
Fussell, DP, McPhedran, RC, de Sterke, CM & Asatryan, AA 2003, 'Three-dimensional local density of states in a finite two-dimensional photonic crystal composed of cylinders', PHYSICAL REVIEW E, vol. 67, no. 4, pp. 1-4.
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Fussell, DP, McPhedran, RC, Martijn de Sterke, C & Asatryan, AA 2003, 'Three-dimensional local density of states in a finite two-dimensional photonic crystal composed of cylinders', Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 67, no. 4 2, pp. 456011-456014.
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The various aspects of three-dimensional local density of states (LDOS) for a finite two-dimensional photonic crystal as a function of space and frequency were studied. The radiation dynamics was determined by LDOS. The multipole method was used for the exact calculation of the dyadic Green's function, which determined LDOS. The LDOS was suppressed by the macroporous silicon.
Gao, X, Huete, AR & Didan, K 2003, 'Multisensor comparisons and validation of MODIS vegetation indices at the semiarid Jornada experimental range', IEEE TRANSACTIONS ON GEOSCIENCE AND REMOTE SENSING, vol. 41, no. 10, pp. 2368-2381.
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Vegetation indices (VIs) are one of the standard science products available from the Moderate Resolution Imaging Spectroradiometer (MODIS) instrument on the Earth Observing System (EOS) Terra platform, launched in December 1999. An important requirement of MODIS science products is that they be rigorously validated. In this study, we conducted a site-intensive MODIS VI product validation at the semiarid Jornada Experimental Range, New Mexico, an EOS Land Validation Core Site. Our validation approach involved scaling up independent fine-grained datasets, including ground and airborne radiometry, and high spatial resolution imagery [Enhanced Thematic Mapper Plus (ETM+)], to the coarser MODIS spatial resolutions. The MODIS VIs were evaluated with respect to their radiometric performances, the uncertainties of the compositing methodology, and their capabilities to depict seasonal variations in vegetation. The MODIS Quick Airborne Looks (MQUALS) radiometric package was found useful in up-scaling field in situ measurements to coarser spatial resolutions. Both single-day nadir-view and 16-day composited MODIS reflectances and VIs matched well with the nadir-based atmosphere-free MQUALS observations for all the land cover types found at Jornada, with the root mean squared deviations less than 0.03.
Gelhausen, O, Klein, HN, Phillips, MR & Goldys, EM 2003, 'Electron irradiation-induced electro-migration and diffusion of defects in Mg-doped GaN', PHYSICA STATUS SOLIDI B-BASIC RESEARCH, vol. 239, no. 2, pp. 310-315.
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In-plane- and depth-resolved cathodoluminescence (CL) microanalysis and spectroscopy was carried out to study the impact of electron injection on electro-migration and diffusion of native defects and residual impurities in rapidly thermally annealed (RTA) Mg-doped p-type GaN. During intense electron beam irradiation (e.g. Eb = 10 keV, Ib = 80 nA), an electric field is generated within the primary beam interaction volume. We observed the following two electric field-related effects: (i) an increased electron recombination length and a subsequent field-assisted charge spreading, which causes a dissociation of Mg-H complexes beyond the interaction volume of the primary electron beam, and ii) thermally assisted electro-migration of positively charged, mobile defects leading to the formation of deeper complexes, which are highly stable and act as nonradiative recombination pathways. Furthermore, the diffusion of electron beam-dissociated hydrogen was found to result in the passivation of Mg acceptors beyond the charge recombination volume.
Gelhausen, O, Klein, HN, Phillips, MR & Goldys, EM 2003, 'Low-energy electron-beam irradiation and yellow luminescence in activated Mg-doped GaN', APPLIED PHYSICS LETTERS, vol. 83, no. 16, pp. 3293-3295.
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The effect of low-energy electron-beam irradiation (LEEBI) on native defects and residual impurities in metalorganic-vapor-phase-epitaxy-grown, lightly Mg-doped, p-type GaN was studied by temperature-resolved and excitation power density-resolved cathodoluminescence spectroscopy. Following the LEEBI treatment, the ubiquitous shallow donoracceptor-pair emission at 3.27 eV decreased, while a deeper DAP emission at ~3.1 eV dramatically increased in intensity, and a broad yellow luminescence band centered at 2.2 eV evolved. The results clearly indicate that the centers involved in the 3.27 eV transition are not stable during irradiation by low-energy electrons. Further, we report that the LEEBI-treatment not only dissociates neutral Mg-H complexes as intended, but simultaneously dissociates other hydrogenated defect complexes, giving rise to additional radiative recombination channels.
Gelhausen, O, Phillips, MR & Goldys, EM 2003, 'A method to improve the light emission efficiency of Mg-doped GaN', JOURNAL OF PHYSICS D-APPLIED PHYSICS, vol. 36, no. 23, pp. 2976-2979.
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Scanning cathodoluminescence (CL) spectroscopy and imaging were used to study the effect of post-growth processing on the CL efficiency of metalorganic vapour phase epitaxy-grown Mg-doped GaN. In this work, two treatments, thermal annealing in high-purity gaseous atmospheres (N2, O2 and H2(5%)/N2) and low-energy electron beam irradiation (LEEBI), have been investigated. Post-growth annealing in a H2/N2 atmosphere followed by LEEBI leads to a significant enhancement of the free electron-to-bound Mg-acceptor (e, Mg) CL emission and a reduction of nonradiative centres involving native defects. The presented results demonstrate that the combination of post-growth annealing in a H2/N2 atmosphere and LEEBI dissociation of MgH complex acceptors significantly improves the light emitting efficiency of Mg-doped p-type GaN. Conversely, the samples annealed in a N2 or O2 atmosphere exhibit a reduced (e, Mg) emission after both annealing and LEEBI treatment.
Genger, RK, Peacock, WJ, Dennis, ES & Finnegan, EJ 2003, 'Opposing effects of reduced DNA methylation on flowering time in Arabidopsis thaliana', PLANTA, vol. 216, no. 3, pp. 461-466.
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Gilmore, AM, Larkum, AWD, Salih, A, Itoh, S, Shibata, Y, Bena, C, Yamasaki, H, Papina, M & Van Woesik, R 2003, 'Simultaneous Time Resolution of the Emission Spectra of Fluorescent Proteins and Zooxanthellar Chlorophyll in Reef-building Corals ¶†', Photochemistry and Photobiology, vol. 77, no. 5, pp. 515-523.
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Light is absorbed by photosynthetic algal symbionts (i.e. zooxanthellae) and by chromophoric fluorescent proteins (FP) in reef-building coral tissue. We used a streak-camera spectrograph equipped with a pulsed, blue laser diode (50 ps, 405 nm) to simultaneously resolve the fluorescence spectra and kinetics for both the FP and the zooxanthellae. Shallow water (<9 m)-dwelling Acropora spp. and Plesiastrea versipora specimens were collected from Okinawa, Japan, and Sydney, Australia, respectively. The main FP emitted light in the blue, blue-green and green emission regions with each species exhibiting distinct color morphs and spectra. All corals showed rapidly decaying species and reciprocal rises in greener emission components indicating Förster resonance energy transfer (FRET) between FP populations. The energy transfer modes were around 250 ps, and the main decay modes of the acceptor FP were typically 1900-2800 ps. All zooxanthellae emitted similar spectra and kinetics with peak emission (∼683 nm) mainly from photosystem II (PSII) chlorophyll (chl) a. Compared with the FP, the PSII emission exhibited similar rise times but much faster decay times, typically around 640-760 ps. The fluorescence kinetics and excitation versus emission mapping indicated that the FP emission played only a minor role, if any, in chl excitation. We thus suggest the FP could only indirectly act to absorb, screen and scatter light to protect PSII and underlying and surrounding animal tissue from excess visible and UV light. We conclude that our time-resolved spectral analysis and simulation revealed new FP emission components that would not be easily resolved at steady state because of their relatively rapid decays due to efficient FRET. We believe the methods show promise for future studies of coral bleaching and for potentially identifying FP species for use as genetic markers and FRET partners, like the related green FP from Aequorea spp.
Gimm, O & Marsh, DJ 2003, 'Does a somatic deletion in RET clarify the sporadic nature of medullary thyroid carcinoma?', Journal of Endocrinological Investigation, vol. 26, no. 4, pp. 381-383.
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Gladstone, W & Davis, J 2003, 'Reduced survey intensity and its consequences for marine reserve selection', BIODIVERSITY AND CONSERVATION, vol. 12, no. 7, pp. 1525-1536.
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There has been much interest in the potential of short-cuts in biodiversity surveys (e.g. physical surrogates, indicator groups, and lower taxonomic resolution) in systematic processes to select networks of representative marine reserves. This study tested the consequences for reserve selection of reducing survey intensity in intertidal rocky shores in southeast Australia. Using a reference data set of species'' distributions based on surveys of two replicate sites in each of 15 locations, a reduction in survey intensity was simulated by randomly eliminating the data from one of the replicate sites in each location. A complementarity-based reserve selection algorithm was used to determine the number of locations required to represent all species once in a reserve network and the irreplaceability value of locations. A reduction in survey intensity led to increases in: the size of reserve networks (of between 8 and 17%); the irreplaceability value of locations; and the number of irreplaceable locations. These changes were caused by a reduction in the observed range sizes of species in the data sets simulating a reduced survey intensity.
Gladstone, W & Schreider, MJ 2003, 'Effects of pruning a temperate mangrove forest on the associated assemblages of macroinvertebrates', MARINE AND FRESHWATER RESEARCH, vol. 54, no. 5, pp. 683-690.
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Mangrove forests around the world are being impacted by development in adjacent land and water areas. An after-control-impact study was undertaken to assess the effects of mangrove forest pruning on the associated benthic macroinvertebrate fauna. Pruning, undertaken 5 years before our sampling period, reduced the height of the forest canopy from 5 m to 1 m. Macrobenthic assemblages were sampled in September 2000 and January 2001 from two randomly selected sites within the pruned section of forest, and two sites in each of two control locations in the same forest. Assemblage composition in the pruned and undisturbed mangrove forests was not significantly different, nor were there significant differences in variability between the two areas. Similarity matrices for assemblages based on higher taxonomic groups and molluscs were highly correlated with similarity matrices for all taxa, indicating the utility of more rapid forms of assessment in this habitat. The results suggest that although short-term impacts may have occurred, no impact on macroinvertebrate assemblages was evident 5 years after the pruning.
Gladstone, W, Krupp, F & Younis, M 2003, 'Development and management of a network of marine protected areas in the Red Sea and Gulf of Aden region', OCEAN & COASTAL MANAGEMENT, vol. 46, no. 8, pp. 741-761.
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Glasner, JD, Liss, P, Plunkett, G, Darling, A, Prasad, T, Rusch, M, Byrnes, A, Gilson, M, Biehl, B, Blattner, FR & Perna, NT 2003, 'ASAP, a systematic annotation package for community analysis of genomes', NUCLEIC ACIDS RESEARCH, vol. 31, no. 1, pp. 147-151.
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ASAP (a systematic annotation package for community analysis of genomes) is a relational database and web interface developed to store, update and distribute genome sequence data and functional characterization (https://asap.ahabs.wisc.edu/annotation/php
Godlewski, M, Guziewicz, E, Kopalko, K, Lusakowska, E, Dynowska, E, Godlewski, MM, Goldys, EM & Phillips, MR 2003, 'Origin of white color light emission in ALE-grown ZnSe', JOURNAL OF LUMINESCENCE, vol. 102, no. 1, pp. 455-459.
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We discuss light emission properties from thin films of ZnSe grown by atomic layer epitaxy on GaAs (1 0 0). White color emission is observed in photoluminescence and cathodoluminescence, due to the observation of three RGB emission bands. We demonstrate possibility of color tuning by either variation of film thickness or, in cathodoluminescence experiments, variation of an accelerating voltage.
Godlewski, M, Ivanov, VY, Goldys, EM, Phillips, M, Böttcher, T, Figge, S, Hommel, D, Czernecki, R, Prystawko, P, Leszczynski, M, Perlin, P, Grzegory, I & Porowski, S 2003, 'Cathodoluminescence Profiling of InGaN-Based Quantum Well Structures and Laser Diodes - In-Plane Instabilities of Light Emission', Acta Physica Polonica A, vol. 103, no. 6, pp. 689-694.
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Golden, CM, Ryan, LM & Holmes, LB 2003, 'Chorionic villus sampling: A distinctive teratogenic effect on fingers?', BIRTH DEFECTS RESEARCH PART A-CLINICAL AND MOLECULAR TERATOLOGY, vol. 67, no. 8, pp. 557-562.
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BACKGROUND: An increased frequency of major limb malformations, especially terminal transverse limb defects, have been described in several studies of birth defects in children who had been exposed to the prenatal diagnosis procedure known as chorionic villus sampling (CVS). Vascular disruption has been proposed as the mechanism behind the fetal effect. We postulate that this mechanism is more likely to affect one or two middle fingers, rather than all five fingers. A recent report of the frequency of defects in any or all fingers in an unexposed control population enabled us to assess whether CVS is associated with an increased frequency of defects involving one or two fingers, as well as terminal transverse limb defects. METHODS: The frequency of limb-reduction defects affecting one or more fingers or toes, including those with constriction rings and tissue loss, in published studies of 20,236 children who had been exposed to CVS was compared with the frequency in 161,252 newborn infants who had not been exposed to CVS. Children with recognized genetic disorders were excluded. RESULTS: Several aspects of the limb deficiencies were more common in the CVS-exposed infants than in unexposed controls. The former were more likely to have: 1) any type of limb deficiency involving one or more fingers (p < .001); 2) absence/hypoplasia of two fingers (1) < .001); and 3) absence/hypoplasia of all five fingers (p = .015). The absence of the distal portion of the third finger was a distinctive type of limb-reduction defect in CVS-exposed infants. CONCLUSIONS: The occurrence of deficiencies in one or two fingers, including those designated as "amniotic band deformities," are as common as terminal transverse limb defects in CVS-exposed infants, and both are much more common than in unexposed infants. The absence of the distal portion of the third finger, with tapering and stiff joints, appears to be a distinctive effect of exposure to CVS
Greene, RW, Ablon, JS & Goring, JC 2003, 'A transactional model of oppositional behavior', Journal of Psychosomatic Research, vol. 55, no. 1, pp. 67-75.
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Oppositional defiant disorder (ODD) refers to a recurrent pattern of developmentally inappropriate levels of negativistic, defiant, disobedient, and hostile behavior toward authority figures. ODD is one of the most common (and debilitating) comorbid disorders within Tourette's disorder (TD). Diverse psychosocial treatment approaches have been applied to children's ODD-related behaviors. In this paper, the authors articulate a transactional developmental conceptualization of oppositional behavior and describe a cognitive-behavioral model of intervention - called Collaborative Problem Solving (CPS) - emanating from this conceptualization. The specific goals of the CPS approach are to help adults (1) understand the specific adult and child characteristics contributing to the development of a child's oppositional behavior; (2) become cognizant of three basic strategies for handling unmet expectations, including (a) imposition of adult will, (b) CPS, and (c) removing the expectation; (3) recognize the impact of each of these three approaches on parent-child interactions; and (4) become proficient, along with their children, at CPS as a means of resolving disagreements and defusing potentially conflictual situations so as to reduce oppositional episodes and improve parent-child compatibility. Summary data from an initial study documenting the effectiveness of the CPS approach (in comparison to the standard of care) are also presented. © 2003 Elsevier Inc. All rights reserved.
GRILLS, AE & OLLENDICK, TH 2003, 'Multiple Informant Agreement and the Anxiety Disorders Interview Schedule for Parents and Children', Journal of the American Academy of Child & Adolescent Psychiatry, vol. 42, no. 1, pp. 30-40.
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Objective: To examine concordance of child, parent, and consensus agreement on the Anxiety Disorders Interview Schedule, Child and Parent versions (ADIS-C/P), for an outpatient sample of children and adolescents and to explore moderators of those relations. Child characteristics (age, gender, social desirability), a family environment variable (conflict), and type of diagnoses (internalizing, externalizing) were systematically examined. Method: These relations were examined in 165 children and adolescents referred to a psychological clinic by family practitioners, pediatricians, schools, and mental health professionals. Participants were individually administered the ADIS-C or ADIS-P by separate clinicians, and consensus diagnoses were determined in a clinical conference. Agreements between child-parent, child-consensus, and parent-consensus were determined. Results: Poor levels of agreement were found among our informants, especially between child and parent and to some extent between child and consensus. Agreement was higher between parent and consensus, suggesting that our clinicians tended to favor parent input over child input. Although the effects were complex, characteristics of the child, family, and type of diagnosis moderated or qualified these findings Conclusions: Although discrepancies exist among our informants, our overall findings suggest important information is obtained from each informant and, when combined with certain modifying characteristics, may lead to diagnostic and treatment decisions.
Guenneau, S, Poulton, C & Movchan, A 2003, 'Conical propagation of electromagnetic waves through an array of cylindrical inclusions', Physica B: Condensed Matter, vol. 338, no. 1-4, pp. 149-152.
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This paper presents properties of electromagnetic waves propagating through a doubly periodic array of cylindrical channels in oblique incidence. A new method, based on a multipole scattering approach, has been proposed to reduce this spectral problem for partial differential equations to a certain algebraic problem of the Rayleigh-type. We also address the question of a singular perturbation induced by the conical incidence and discuss some effective properties for ferro-magnetic photonic crystal fibers in the long wavelength limit.
Guenneau, S, Poulton, CG & Movchan, AB 2003, 'Oblique propagation of electromagnetic and elastic waves for an array of cylindrical fibres', Proceedings of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences, vol. 459, no. 2037, pp. 2215-2263.
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This paper presents analysis of electromagnetic and elastodynamic waves propagating through a doubly periodic array of cylindrical channels in oblique incidence. A new method, based on a multipole scattering approach, has been proposed to reduce these spectral problems for partial differential equations to certain algebraic problems of the Rayleigh type. We obtain a formulation in terms of an eigenvalue problem that enables us to construct the high-order dispersion curves and to study both photonic and phononic band-gap structures in oblique incidence. We also address the question of a singular perturbation induced by the conical incidence and discuss some effective properties for ferromagnetic photonic crystal fibres in the long-wavelength limit.
Guo, ZP, Konstantinov, K, Wang, GX, Liu, HK & Dou, SX 2003, 'Preparation of orthorhombic LiMnO2 material via the sol–gel process', Journal of Power Sources, vol. 119-121, pp. 221-225.
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Guo, ZP, Zhong, S, Wang, GX, Liu, HK & Dou, SX 2003, 'Structure and electrochemical characteristics of LiMn0.7M0.3O2 (M=Ti, V, Zn, Mo, Co, Mg, Cr)', Journal of Alloys and Compounds, vol. 348, no. 1-2, pp. 231-235.
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Hamlett, A, Ryan, L, Serrano-Trespalacios, P & Wolfinger, R 2003, 'Mixed models for assessing correlation in the presence of replication', JOURNAL OF THE AIR & WASTE MANAGEMENT ASSOCIATION, vol. 53, no. 4, pp. 442-450.
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The need to assess correlation in settings where multiple measurements are available on each of the variables of interest often arises in environmental science. However, this topic is not covered in introductory statistics texts. Although several ad hoc approaches can be used, they can easily lead to invalid conclusions and to a difficult choice of an appropriate measure of the correlation. Lam et al. approached this problem by using maximum likelihood estimation in cases where the replicate measurements are linked over time, but the method requires specialized software. We reanalyze the data of Lam et al. using PROC MIXED in SAS and show how to obtain the parameter estimates of interest with just a few lines of code. We then extend Lam et al.'s method to settings where the replicate measurements are not linked. Analysis of the unlinked case is illustrated with data from a study designed to assess correlations between indoor and outdoor measurements of benzene concentration in the air.
Hardin, JW & Carroll, RJ 2003, 'Measurement Error, GLMs, and Notational Conventions', The Stata Journal: Promoting communications on statistics and Stata, vol. 3, no. 4, pp. 329-341.
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Hardin, JW & Carroll, RJ 2003, 'Measurement Error, GLMs, and Notational Conventions', The Stata Journal: Promoting communications on statistics and Stata, vol. 3, no. 4, pp. 329-341.
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This paper introduces additive measurement error in a generalized linear-model context. We discuss the types of measurement error along with their effects on fitted models. In addition, we present the notational conventions to be used in this and the accompanying papers.
Hardin, JW & Carroll, RJ 2003, 'Variance Estimation for the Instrumental Variables Approach to Measurement Error in Generalized Linear Models', The Stata Journal: Promoting communications on statistics and Stata, vol. 3, no. 4, pp. 342-350.
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This paper derives and gives explicit formulas for a derived sandwich variance estimate. This variance estimate is appropriate for generalized linear additive measurement error models fitted using instrumental variables. We also generalize the known results for linear regression. As such, this article explains the theoretical justification for the sandwich estimate of variance utilized in the software for measurement error developed under the Small Business Innovation Research Grant (SBIR) by StataCorp. The results admit estimation of variance matrices for measurement error models where there is an instrument for the unknown covariate.
Hardin, JW & Carroll, RJ 2003, 'Variance Estimation for the Instrumental Variables Approach to Measurement Error in Generalized Linear Models', The Stata Journal: Promoting communications on statistics and Stata, vol. 3, no. 4, pp. 342-350.
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Hardin, JW, Schmiediche, H & Carroll, RJ 2003, 'Instrumental Variables, Bootstrapping, and Generalized Linear Models', The Stata Journal: Promoting communications on statistics and Stata, vol. 3, no. 4, pp. 351-360.
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This paper discusses and illustrates the qvf command for fitting generalized linear models. The differences between this new command and Stata's glm command are highlighted. One of the most notable features of the qvf command is its ability to include instrumental variables. This functionality was added specifically to address measurement error but may be utilized by the user for other purposes. The qvf command was developed in the C-language using Stata's new plugin features and executes much faster than the glm ado-file.
Hardin, JW, Schmiediche, H & Carroll, RJ 2003, 'Instrumental Variables, Bootstrapping, and Generalized Linear Models', The Stata Journal: Promoting communications on statistics and Stata, vol. 3, no. 4, pp. 351-360.
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Hardin, JW, Schmiediche, H & Carroll, RJ 2003, 'The Regression-calibration Method for Fitting Generalized Linear Models with Additive Measurement Error', The Stata Journal: Promoting communications on statistics and Stata, vol. 3, no. 4, pp. 361-372.
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This paper discusses and illustrates the method of regression calibration. This is a straightforward technique for fitting models with additive measurement error. We present this discussion in terms of generalized linear models (GLMs) following the notation defined in Hardin and Carroll (2003). Discussion will include specified measurement error, measurement error estimated by replicate error-prone proxies, and measurement error estimated by instrumental variables. The discussion focuses on software developed as part of a small business innovation research (SBIR) grant from the National Institutes of Health (NIH).
Hardin, JW, Schmiediche, H & Carroll, RJ 2003, 'The Regression-calibration Method for Fitting Generalized Linear Models with Additive Measurement Error', The Stata Journal: Promoting communications on statistics and Stata, vol. 3, no. 4, pp. 361-372.
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Hardin, JW, Schmiediche, H & Carroll, RJ 2003, 'The Simulation Extrapolation Method for Fitting Generalized Linear Models with Additive Measurement Error', The Stata Journal: Promoting communications on statistics and Stata, vol. 3, no. 4, pp. 373-385.
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We discuss and illustrate the method of simulation extrapolation for fitting models with additive measurement error. We present this discussion in terms of generalized linear models (GLMs) following the notation defined in Hardin and Carroll (2003). As in Hardin, Schmiediche, and Carroll (2003), our discussion includes specified measurement error and measurement error estimated by replicate error-prone proxies. In addition, we discuss and illustrate three extrapolant functions.
Hardin, JW, Schmiediche, H & Carroll, RJ 2003, 'The Simulation Extrapolation Method for Fitting Generalized Linear Models with Additive Measurement Error', The Stata Journal: Promoting communications on statistics and Stata, vol. 3, no. 4, pp. 373-385.
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Harry, EJ & Lewis, PJ 2003, 'Early targeting of Min proteins to the cell poles in germinated spores of Bacillus subtilis : evidence for division apparatus‐independent recruitment of Min proteins to the division site', Molecular Microbiology, vol. 47, no. 1, pp. 37-48.
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The earliest event in bacterial cell division is the assembly of a tubulin-like protein, FtsZ, at mid-cell to form a ring. In rod-shaped bacteria, the Min system plays an important role in division site placement by inhibiting FtsZ ring formation specifically at the polar regions of the cell. The Min system comprises MinD and MinC, which form an inhibitor complex and, in Bacillus subtilis, DivIVA, which ensures that division is inhibited only in the polar regions. All three proteins localize to the division site at mid-cell and to cell poles. Their recruitment to the division site is dependent on localization of both `early' and `late' division proteins. We have examined the temporal and spatial localization of DivIVA relative to that of FtsZ during the first and second cell division after germination and outgrowth of B. subtilis spores. We show that, although the FtsZ ring assembles at mid-cell about halfway through the cell cycle, DivIVA assembles at this site immediately before cell division and persists there during Z-ring constriction and completion of division. We also show that both DivIVA and MinD localize to the cell poles immediately upon spore germination, well before a Z ring forms at mid-cell. Furthermore, these proteins were found to be present in mature, dormant spores. These results suggest that targeting of Min proteins to division sites does not depend directly on the assembly of the division apparatus, as suggested previously, and that potential polar division sites are blocked at the earliest possible stage in the cell cycle in germinated spores as a mechanism to ensure that equal-sized daughter cells are produced upon cell division
Hauser, R, Chen, ZY, Pothier, L, Ryan, L & Altshul, L 2003, 'The relationship between human semen parameters and environmental exposure to polychlorinated biphenyls and p,p '-DDE', ENVIRONMENTAL HEALTH PERSPECTIVES, vol. 111, no. 12, pp. 1505-1511.
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Hauser, R, Rice, TM, Krishna Murthy, GG, Wand, MP, Lewis, D, Bledsoe, T & Paulauskis, J 2003, 'The upper airway response to pollen is enhanced by exposure to combustion particulates: a pilot human experimental challenge study.', Environmental Health Perspectives, vol. 111, no. 4, pp. 472-477.
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Although human experimental studies have shown that gaseous pollutants enhance the inflammatory response to allergens, human data on whether combustion particulates enhance the inflammatory response to allergen are limited. Therefore, we conducted a human experimental study to investigate whether combustion particulates enhance the inflammatory response to aeroallergens. "Enhancement" refers to a greater-than-additive response when combustion particulates are delivered with allergen, compared with the responses when particulates and allergen are delivered alone. Eight subjects, five atopic and three nonatopic, participated in three randomized exposure-challenge sessions at least 2 weeks apart (i.e., clean air followed by allergen, particles followed by no allergen, or particles followed by allergen). Each session consisted of nasal exposure to combustion particles (target concentration of 1.0 mg/m3) or clean air for 1 hr, followed 3 hr later by challenge with whole pollen grains or placebo. Nasal lavage was performed immediately before particle or clean air exposure, immediately after exposure, and 4, 18 and 42 hr after pollen challenge. Cell counts, differentials, and measurement of cytokines were performed on each nasal lavage. In atopic but not in nonatopic subjects, when allergen was preceded by particulates, there was a significant enhancement immediately after pollen challenge in nasal lavage leukocytes and neutrophils (29.7 × 103 cells/mL and 25.4 × 103 cells/mL, respectively). This represents a 143% and 130% enhancement, respectively. The enhanced response for interleukin-4 was 3.23 pg/mL (p = 0.06), a 395% enhancement. In atopic subjects there was evidence of an enhanced response when particulates, as compared to clean air, preceded the allergen challenge.
Hauser, R, Rice, TM, Murthy, GGK, Wand, MP, Lewis, D, Bledsoe, T & Paulauskis, J 2003, 'The upper airway response to pollen is enhanced by exposure to combustion particulates: A pilot human experimental challenge study', ENVIRONMENTAL HEALTH PERSPECTIVES, vol. 111, no. 4, pp. 472-477.
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Heath, D & Platen, E 2003, 'Pricing of index options under a minimal market model with log-normal scaling', QUANTITATIVE FINANCE, vol. 3, no. 6, pp. 442-450.
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Helfrich, M, Bommer, B, Oster, U, Klement, H, Mayer, K, Larkum, AWD & Rüdiger, W 2003, 'Chlorophylls of the c family: absolute configuration and inhibition of NADPH:protochlorophyllide oxidoreductase', Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol. 1605, no. 1-3, pp. 97-103.
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Using circular dichroism (CD) spectroscopy, the stereochemistry at C-132 of members of the chlorophyll (Chl) c family, namely Chls c1, c2, c3 and [8-vinyl]-protochlorophyllide a (Pchlide a) was determined. By comparison with spectra of known enantiomers, all Chl c members turned out to have the (R) configuration, which is in agreement with considerations drawn from chlorophyll biosynthesis. Except for a double bond in the side chain at C-17, the chemical structure of Chl c1 is identical with Pchlide a, the natural substrate of the light-dependent NADPH:protochlorophyllide oxidoreductase (POR). Thus, lack of binding to the active site due to the wrong configuration at C-132, which had been proposed previously, cannot be an explanation for inactivity of Chl c in this enzymic reaction. Our results show rather that Chl c1 is a competitive inhibitor for this enzyme, tested with Pchlide a and Zn-protopheophorbide a (Zn-Ppheide a) as substrates. © 2003 Elsevier B.V. All rights reserved.
Hodgkinson, IJ, Wu, QH, De Silva, L, Arnold, M, McCall, MW & Lakhtakia, A 2003, 'Supermodes of chiral photonic filters with combined twist and layer defects', Physical Review Letters, vol. 91, no. 22.
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We consider the circularly polarized localized modes of chiral photonic structures with combined central twist and isotropic layer defects. The general filter is shown to suffer from anomalous remittance and saturation of linewidth as the thickness of the structure is increased. However, by choosing parameters that phase match the elements of the round-trip matrix of the isotropic layer defect, we demonstrate the existence of supermodes that maintain exceptional purity of polarization state and exponential decrease in linewidth as the thickness is increased. © 2003 The American Physical Society.
Hodgkinson, IJ, Wu, QH, De Silva, L, Arnold, M, McCall, MW & Lakhtakia, A 2003, 'Supermodes of chiral photonic filters with combined twist and layer defects', PHYSICAL REVIEW LETTERS, vol. 91, no. 22, pp. 1-4.
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We consider the circularly polarized localized modes of chiral photonic structures with combined central twist and isotropic layer defects. The general filter is shown to suffer from anomalous remittance and saturation of linewidth as the thickness of the structure is increased. However, by choosing parameters that phase match the elements of the round-trip matrix of the isotropic layer defect, we demonstrate the existence of supermodes that maintain exceptional purity of polarization state and exponential decrease in linewidth as the thickness is increased.
Hohnberg, D, Ralph, PJ & Jones, H 2003, 'Toxicity of the herbicide atrazine at environmental concentrations to Vallisneria Gigantea, assessed using chlorophyll fluorescence', Australasian Journal of Ecotoxicology, vol. 9, pp. 93-100.
Hong, MY, Chapkin, RS, Davidson, LA, Turner, ND, Morris, JS, Carroll, RJ & Lupton, JR 2003, 'Fish Oil Enhances Targeted Apoptosis During Colon Tumor Initiation in Part by Downregulating Bcl-2', Nutrition and Cancer, vol. 46, no. 1, pp. 44-51.
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Howell, VM 2003, 'HRPT2 mutations are associated with malignancy in sporadic parathyroid tumours', Journal of Medical Genetics, vol. 40, no. 9, pp. 657-663.
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Huang, BX, Whitchurch, CB & Mattick, JS 2003, 'FimX, a multidomain protein connecting environmental signals to twitching motility in Pseudomonas aeruginosa', JOURNAL OF BACTERIOLOGY, vol. 185, no. 24, pp. 7068-7076.
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Twitching motility is a form of surface translocation mediated by the extension, tethering, and retraction of type IV pili. Three independent Tn5-B21 mutations of Pseudomonas aeruginosa with reduced twitching motility were identified in a new locus which
Huete, AR, Miura, T & Gao, X 2003, 'Land cover conversion and degradation analyses through coupled soil-plant biophysical parameters derived from hyperspectral EO-1 Hyperion', IEEE TRANSACTIONS ON GEOSCIENCE AND REMOTE SENSING, vol. 41, no. 6, pp. 1268-1276.
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Land degradation in semiarid areas results from various factors, including climate variations and human activity, and can lead to desertification. The process of degradation results in simultaneous and complex variations of many interrelated soil and vegetation biophysical parameters, rendering it difficult to develop simple and robust remote sensing mapping and monitoring approaches. In this study, we tested the use of Earth Observing 1 (EO-1) Hyperion hyperspectral data to analyze land degradation patterns within the protected Nacunan Biosphere Reserve and surrounding areas in the Monte Desert region of Argentina. The floristically diverse vegetation communities included mesquite forest (algarrobal), creosotebush (jarillal), sand-dune (medanal), and severely degraded (peladal) sites. Various optical measures of land degradation were employed, including vegetation indexes, spectral derivatives, albedo, and spectral mixture analysis. Spectral mixture analysis provided the best characterization of the unstable and spatially variable landscape encountered at the Nacunan Biosphere Reserve. Spectral unmixing provided simultaneous measures of green vegetation, nonphotosynthetic vegetation, and soil, all of which were deemed essential in characterizing land degradation. In conjunction with multitemporal data from the more commonly employed broadband sensors, hyperspectral data can provide a powerful methodology toward understanding environmental degradation.
Hughes, JA, De Bruyn, R, Patel, K, Langford, S-J & Thompson, D 2003, 'Three-dimensional sonographic evaluation of the infant spine: Preliminary findings', Journal of Clinical Ultrasound, vol. 31, no. 1, pp. 9-20.
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Hung, A, Nguyen, HT, Lee, WB, Rickard, MT, Thornton, BS & Blinowska, A 2003, 'Diagnostic Abilities of Three CAD Methods for Assessing Microcalcifications In Mammograms and An Aspect of Equivocal Cases Decisions by Radiologists', Australian Physical And Engineering Sciences in Medicine, vol. 26, no. 3, pp. 78-83.
Hung, A, Nguyen, HT, Thornton, BS & Zinder, Y 2003, 'Dynamic Programming Approach to Image Segmentation and its Application to Pre-processing of Mammograms', Australian Journal of Intelligent Information Processing Systems, vol. 8, no. 2, pp. 51-56.
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Images egmentationis an importent componento f imagop rocessings irce significantt ime can be savedi f a region of interest is extracted by al efficient segmentationa lgorithm. A dynamic programming image segmentation algorithnr is presented. The algorithm is applicable to images with a large matrix of gray levels of pixel values and generatesa path separatingt he object from the background.T he report of a.na pplication of the proposed algorithm to digitised mammotramsc omplementsit s description.
Hyam, DM, Conway, RC, Sathiyaseelan, Y, Gebski, V, Morgan, GJ, Walker, DM & Veness, MJ 2003, 'Tongue cancer: Do patients younger than 40 do worse?', Australian Dental Journal, vol. 48, no. 1, pp. 50-54.
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Background: Debate continues as to whether being young confers a worse prognosis for patients with squamos cell carcinoma of the tongue. Recent papers have provided conflicting views in this debate. In this study we aimed to investigate if young age at the time of diagnosis of squamos cell carcinoma of the tongue confers a worse prognosis. Methods: Eligible patients were identified through the computer database of the Department of Radiation Oncology, Westmead Hospital, Sydney. All eligible patients were treated with radical intent. Using age 40 as a cutt off multivariate and survival analysis was undertaken to compare age groups. Results: Median age at diagnosis was 60 years (range, 19-86 years) in 84 males (65 per cent) and 45 females (35 per cent) Median follow-up time was 43 months (range, 2.3-203 months). Fifteen patients (12 per cent) were aged <40 years. On univariate analysis stage and age were significant determinants of disease-spicific survival. There was no difference in overall survival between the young (<40 years) and middle-age groups (40-60 years). However, the young and the middle aged were both more likely to survive than the older age group (>60 years). On multivariate analysis age remained a significant factor for determining disease-spicific survival, with the older age group 2.9 times more likely to die than the younger groups. Conclusion: Young age (<40 years) did not portend to worse survival in comparison to older tongue cancer patients.
Hyde, GJ, Davies, DS, Cole, L & Ashford, AE 2003, 'Retention of fluorescent probes during aldehyde-free anhydrous freeze-substitution', Journal of Microscopy, vol. 210, no. 2, pp. 125-130.
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Indsto, JO, Nassif, NT, Kefford, RF & Mann, GJ 2003, 'Frequent loss of heterozygosity targeting the inactive X chromosome in melanoma.', Clin Cancer Res, vol. 9, no. 17, pp. 6476-6482.
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After previous preliminary observations of paradoxical deletion events affecting the inactive X chromosome in melanoma, we have surveyed the X chromosome for deletions using 23 polymorphic microsatellite markers in 28 informative (female XX) metastatic melanomas. Ten tumors (36%) showed at least one loss of heterozygosity (LOH) event, and in two cases an entire chromosome showed LOH at all informative loci. Four distinct X chromosome smallest regions of overlap can be resolved. An 18.6-Mb region on the p arm involving 9 of 28 (32%) samples lies between the markers DXS1061 and DXS1068. An equally frequently deleted smallest region of overlap straddled the centromere, bounded by DX1204 on the p arm and DXS983 14.6 Mb away in Xq11-12. One tumor potentially defines this region more tightly to a 10.6-Mb smallest region of overlap bounded by DXS1190 and DXS981 that contains the androgen receptor (AR) gene. A 6.2-Mb deleted region can be defined between the markers DXS8051 and DXS9902 in 8 of 28 (28%) tumors. An additional, less frequently deleted region of 25.7 Mb was found on distal Xq between the markers DXS1212 and DXS1193 in 5 of 28 (18%) tumors. X inactivation analysis of five tumors with LOH, using the AR exon 1 CAG repeat, showed that in each case, the inactive, hypermethylated allele was the one deleted. Analysis of copy number in this region by quantitative PCR showed restoration to disomy and, in one case, trisomy at AR.
Ismond, KP, Dolferus, R, De Pauw, M, Dennis, ES & Good, AG 2003, 'Enhanced low oxygen survival in Arabidopsis through increased metabolic flux in the fermentative pathway', PLANT PHYSIOLOGY, vol. 132, no. 3, pp. 1292-1302.
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Jermiin, LS, Ho, SYW, Ababneh, F, Robinson, J & Larkum, AWD 2003, 'Hetero: a program to simulate the evolution of DNA on a four-taxon tree.', Appl Bioinformatics, vol. 2, no. 3, pp. 159-163.
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We present a computer program to simulate the evolution of a nucleotide sequence on a phylogenetic tree with four tips. The program, Hetero, allows users to assign lineage-specific differences in the rate matrices used to describe the evolutionary process. It has a simple user interface and output, making it equally useful in the teaching and research of phylogenetics.
Jiang, L 2003, 'Cardiomyocyte apoptosis is associated with increased wall stress in chronic failing left ventricle', European Heart Journal, vol. 24, no. 8, pp. 742-751.
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Aims: We examined cardiomyocyte apoptosis in chronic heart failure (HF) and its possible link to elevated wall stress. Methods and results: Moderate HF was produced in sheep by sequential coronary microembolization. Six months later, the animals remained in a stable compensated haemodynamic state of HF. Apoptosis of cardiomyocytes in left ventricles was verified using Western blotting based on increased expression of the apoptosis-associated death receptor Fas (1.5-fold); its ligand (FasL, 2.0-fold); and an upstream protease caspase-8 (2.7-fold) as well as its active cleavage peptide, p20 (5.6-fold). Previously we have reported the elevated expression of caspase-3 in the same animal model. The occurrence of apoptotic cardiomyocytes (0.3%) was quantified by TUNEL assays. Haemodynamic analysis indicated that ventricular dilatation, without wall thickening, caused a 2-fold increase in LV wall stress which, together with LV end-diastolic pressure, was linearly correlated with expression of Fas/FasL. Immunohistochemical studies localized FasL and caspase-8 to intercalated discs, suggesting that wall stress may play a role in initiating cardiomyocyte apoptosis. Conclusion: Apoptosis of cardiomyocytes in chronic HF is associated with increased wall stress, which may be responsible for the activation of a Fas/FasL and caspase-8 interaction in the region of intercalated discs. © 2003 The European Society of Cardiology. Published by Elsevier Science Ltd. All rights reserved.
Johnson, CD, Balagurunathan, Y, Lu, KP, Tadesse, M, Falahatpisheh, MH, Carroll, RJ, Dougherty, ER, Afshari, CA & Ramos, KS 2003, 'Genomic profiles and predictive biological networks in oxidant-induced atherogenesis', Physiological Genomics, vol. 13, no. 3, pp. 263-275.
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Atherogenic stimuli trigger complex responses in vascular smooth muscle cells (VSMCs) that culminate in activation/repression of overlapping signal transduction cascades involving oxidative stress. In the case of benzo[a]pyrene (BaP), a polycyclic aromatic hydrocarbon present in tobacco smoke, the atherogenic response involves interference with redox homeostasis by oxidative intermediates of BaP metabolism. The present studies were conducted to define genomic profiles and predictive gene biological networks associated with the atherogenic response of murine (aortic) VSMCs to BaP. A combined oxidant-antioxidant treatment regimen was used to identify redox-sensitive targets during the early course of the atherogenic response. Gene expression profiles were defined using cDNA microarrays coupled to analysis of variance and several clustering methodologies. A predictor algorithm was then applied to gain insight into critical gene-gene interactions during atherogenesis. Supervised and nonsupervised analyses identified clones highly regulated by BaP, unaffected by antioxidant, and neutralized by combined chemical treatments. Lymphocyte antigen-6 complex, histocompatibility class I component factors, secreted phosphoprotein, and several interferon-inducible proteins were identified as novel redox-regulated targets of BaP. Predictor analysis confirmed these relationships and identified immune-related genes as critical molecular targets of BaP. Redox-dependent patterns of gene deregulation indicate that oxidative stress plays a prominent role during the early stages of BaP-induced atherogenesis.
Johnson, M, Broady, K, Angelici, MC & Johnson, A 2003, 'The relationship between nucleoside triphosphate hydrolase (NTPase) isoform and Toxoplasma strain virulence in rat and human toxoplasmosis', Microbes and Infection, vol. 5, no. 9, pp. 797-806.
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Jones, N, Lennard, C, Stoilovic, M & Roux, C 2003, 'An evaluation of multimetal deposition II', Journal of Forensic Identification, vol. 53, no. 4, pp. 444-488.
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Multimetal deposition (MMD) has not found routine application because of its complexity and inconsistent results. Recent research that sought to overcome these problems resulted in the development of a new formulation known as MMDII. MMDII utilizes smaller colloidal gold particles (14 nm as compared to 30 nm) and an alternative physical developer (silver acetate/hydroquinone rather than silver nitrate/iron(II)/iron(III)). Several MMD formulations were evaluated in this study, and MMDII proved to be the superior formulation, giving better overall print detail. On nonporous surfaces, MMDII may offer further print development than that achieved with cyanoacrylate fuming (CA) and luminescent staining, but vacuum metal deposition (VMD) always gave superior results to MMD. MMDII and VMD were compared to standard techniques on a number of semiporous surfaces, including expanded polystyrene, waxed paper, latex gloves, and nitrile gloves. MMDII proved to be the technique of choice on these surfaces. The ability of MMDII to react with print residue within and on the surface is believed to be important to its success.
Ju, Y, Huang, W, Jiang, L, Barden, JA & Allen, DG 2003, 'ATP modulates intracellular Ca2+and firing rate through a P2Y1purinoceptor in cane toad pacemaker cells', The Journal of Physiology, vol. 552, no. 3, pp. 777-787.
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The effect of extracellular ATP (10-100 μM) on intracellular Ca2+ concentration ([Ca2+]i) and firing rate has been studied in single pacemaker cells isolated from the sinus venosus of cane toads. In spontaneously firing cells, ATP initially increased peak [Ca2+]i by 43 ± 5%, increased diastolic [Ca2+]i by 20 + 3% and increased the firing rate by 58 ± 8%. These early effects were followed by a late phase in which both the peak [Ca26+]i and the firing rate declined. Adenosine, and UTP (respectively, P1- and P2Y2,4,6-selective agonists) caused no significant change in [Ca2+]i or firing rate, while αβ-methylene ATP (a P2X1,3 agonist) caused a small increase in firing rate but no changes in [Ca2+]i. In contrast the P2Y1-selective agonist 2-MesADP (1 μM) mimicked the biphasic effects of ATP and these effects were inhibited by the purinoceptor antagonists suramin and PPADS and by the P2Y1-selective antagonist MRS 2179. Immunohistochemistry established that P2Y1 purinoceptors were present on the cell surface. Western blotting analysis demonstrated that the P2Y1 antibody recognised a 57 kDa protein. After sarcoplasmic reticulum Ca2+ release was prevented with caffeine or ryanodine, ATP no longer had any effect on [Ca2+]i or firing rate. Furthermore, the SR Ca2+ store content was decreased during the late phase of 2-MesADP application. The effect of ATP was coupled to phospholipase C (PLC) activity because the PLC inhibitor U-73122 eliminated the effects of ATP. Our study shows that in toad pacemaker cells, the biphasic effects of ATP on pacemaker activity are mainly through P2Y1 purinoceptors, which are able to modulate Ca2+ release from the SR Ca2+ store.
Kahnoski, K, Khoo, SK, Nassif, NT, Chen, J, Lobo, GP, Segelov, E & Teh, BT 2003, 'Alterations of the Birt-Hogg-Dube gene (BHD) in sporadic colorectal tumours', JOURNAL OF MEDICAL GENETICS, vol. 40, no. 7, pp. 511-515.
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Colorectal cancer (CRC) is the third most common cancer diagnosed in both men and women, and the second most common cause of cancer deaths in the United States. There were approximately 150 000 new cases resulting in 57 000 deaths in 2002.1 CRC is one of the most studied cancer types and its underlying aetiology best, elucidated. Colorectal tumorigenesis involves a multistep process including genetic and epigenetic alterations of numerous CRC related genes that may act as either oncogenes or tumour suppressor genes.2-5 The majority of sporadic CRCs are characterised by deletions of large chromosomal segments, which are thought to represent the loss of wild type tumour suppressor genes.6 7 About 15% of sporadic CRCs, on the other hand, show microsatellite instability (MSI), characterised by the insertion and/or deletion of simple repeat sequences and indicative of the involvement of defective mismatch repair.
Kammann, EE & Wand, MP 2003, 'Geoadditive models', Journal of the Royal Statistical Society: Series C (Applied Statistics), vol. 52, no. 1, pp. 1-18.
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Kariola, R, Otway, R, Lönnqvist, KE, Raevaara, TE, Macrae, F, Vos, YJ, Kohonen-Corish, M, Hofstra, RM & Nyström-Lahti, M 2003, 'Two mismatch repair gene mutations found in a colon cancer patient – which one is pathogenic?', Human Genetics, vol. 112, no. 2, pp. 105-109.
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Kelly, T, Doble, P & Dawson, M 2003, 'Chiral separation of methadone, 2-ethylidene-1,5-dimethyl-3,3-diphenylpyrrol (EDDP) and 2-ethyl-5-methyl-3,3-diphenyl-1-pyrroline (EMDP) by capillary electrophoresis using cyclodextrin derivatives', ELECTROPHORESIS, vol. 24, no. 12-13, pp. 2106-2110.
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A stereoselective method was developed for the simultaneous determination of methadone and its two major metabolites, 2-ethylidene-1,5-dimethyl-3,3-diphenylpyrrolidine (EDDP) and 2-ethyl-5-methyl-3,3-diphenyl-1-pyrroline (EMDP) by capillary electrophoresis. Five -cyclodextrin (CD) background electrolyte (BGE) additives were evaluated for resolution efficiency. The conditions for baseline resolution of each of the three enantiomer pairs was determined to be 1 mM heptakis-(2,6-di-O-methyl)--cyclodextrin (DMCD) in 100 mM phosphate at pH 2.6. This method represents the first successful method for the resolution of the six enantiomers associated with the metabolism of methadone. The utilisation of doubly coated capillaries in conjunction with CD derivatives for a faster separation of the methadone-related enantiomers is also reported. The coated capillaries were prepared using a polycation of poly(diallyldimethylammonium chloride) (PDDAC) and a polyanion of dextran sulfate. Baseline resolution of the methadone enantiomers was achieved with a BGE of 8 mM (2-hydroxy)propyl--cyclodextrin (HPCD) in 100 mM phosphate at pH 2.6. The migration times for the stereoselective methadone separation were approximately 4 min, which represented a reduction by a factor of approximately three, compared to that attained using analogous conditions with the uncoated capillary.
Kim, I, Cohen, ND & Carroll, RJ 2003, 'Semiparametric Regression Splines in Matched Case‐Control Studies', Biometrics, vol. 59, no. 4, pp. 1158-1169.
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Kim, JK, Fillmore, JJ, Gavrilova, O, Chao, L, Higashimori, T, Choi, H, Kim, H-J, Yu, C, Chen, Y, Qu, X, Haluzik, M, Reitman, ML & Shulman, GI 2003, 'Differential Effects of Rosiglitazone on Skeletal Muscle and Liver Insulin Resistance in A-ZIP/F-1 Fatless Mice', Diabetes, vol. 52, no. 6, pp. 1311-1318.
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To determine the role of adipocytes and the tissue-specific nature in the insulin sensitizing action of rosiglitazone, we examined the effects of 3 weeks of rosiglitazone treatment on insulin signaling and action during hyperinsulinemic-euglycemic clamps in awake A-ZIP/F-1 (fatless), fat-transplanted fatless, and wild-type littermate mice. We found that 53 and 66% decreases in insulin-stimulated glucose uptake and insulin receptor substrate (IRS)-1–associated phosphatidylinositol (PI) 3-kinase activity in skeletal muscle of fatless mice were normalized after rosiglitazone treatment. These effects of rosiglitazone treatment were associated with 50% decreases in triglyceride and fatty acyl-CoA contents in the skeletal muscle of rosiglitazone-treated fatless mice. In contrast, rosiglitazone treatment exacerbated hepatic insulin resistance in the fatless mice and did not affect already reduced IRS-2–associated PI 3-kinase activity in liver. The worsening of insulin action in liver was associated with 30% increases in triglyceride and fatty acyl-CoA contents in the liver of rosiglitazone-treated fatless mice. In conclusion, these data support the hypothesis that rosiglitazone treatment enhanced insulin action in skeletal muscle mostly by its ability to repartition fat away from skeletal muscle.
Kim, JY, Hauser, R, Wand, MP, Herrick, RF, Amarasiriwardena, CJ & Christiani, DC 2003, 'The association of expired nitric oxide with occupational particulate metal exposure', Environmental Research, vol. 93, no. 2, pp. 158-166.
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Kim, JY, Hauser, R, Wand, MP, Herrick, RF, Houk, RS, Aeschliman, DB, Woodin, MA & Christiani, DC 2003, 'Association of expired nitric oxide with urinary metal concentrations in boilermakers exposed to residual oil fly ash', American Journal of Industrial Medicine, vol. 44, no. 5, pp. 458-466.
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Kim, JY, Wand, MP, Hauser, R, Mukherjee, S, Herrick, RF & Christiani, DC 2003, 'Association of expired nitric oxide with occupational particulate exposure', ENVIRONMENTAL HEALTH PERSPECTIVES, vol. 111, no. 5, pp. 676-680.
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Kim, JY, Wand, MP, Hauser, R, Mukherjee, S, Herrick, RF & Christiani, DC 2003, 'Association of expired nitric oxide with occupational particulate exposure.', Environmental Health Perspectives, vol. 111, no. 5, pp. 676-680.
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Particulate air pollution has been associated with adverse respiratory health effects. This study assessed the utility of expired nitric oxide to detect acute airway responses to metal-containing fine particulates. Using a repeated-measures study design, we investigated the association between the fractional concentration of expired nitric oxide (FENO) and exposure to particulate matter with an aerodynamic mass median diameter of ≤ 2.5 μm (PM2.5) in boilermakers exposed to residual oil fly ash and metal fumes. Subjects were monitored for 5 days during boiler repair overhauls in 1999 (n = 20 or 2000 (n = 14). The Wilcoxon median baseline FENO was 10.6 ppb [95% confidence interval (CI): 9.1, 12.7] in 1999 and 7.4 ppb (95% CI: 6.7, 8.0) in 2000. The Wilcoxon median PM2.5 8-hr time-weighted average was 0.56 mg/m3 (95% CI: 0.37, 0.93) in 1999 and 0.86 mg/m3 (95% CI: 0.65, 1.07) in 2000. FENO levels during the work week were significantly lower than baseline FENO in 1999 (p < 0.001). A significant inverse exposure-response relationship between log-transformed FENO and the previous workday's PM2.5 concentration was found in 1999, after adjusting for smoking status, age, and sampling year. With each 1 mg/m3 incremental increase in PM2.5 exposure, log FENO decreased by 0.24 (95% CI: -0.38, -0.10) in 1999. The lack of an exposure-response relationship between PM2.5 exposure and FENO in 2000 could be attributable to exposure misclassification resulting from the use of respirators. In conclusion, occupational exposure to metal-containing fine particulates was associated with significant decreases in FENO in a survey of workers with limited respirator usage.
King, NJ, Heyne, D, Tonge, BJ, Mullen, P, Myerson, N, Rollings, S & Ollendick, TH 2003, 'Sexually Abused Children Suffering From Post-traumatic Stress Disorder: Assessment and Treatment Strategies', Cognitive Behaviour Therapy, vol. 32, no. 1, pp. 2-12.
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Child sexual abuse is a highly prevalent problem that frequently occasions the onset of post-traumatic stress disorder in the victimized youngster. This selective review addresses recent advances in the assessment and treatment of sexually abused children with post-traumatic stress disorder. Firstly, we outline the diagnostic criteria for post-traumatic stress disorder and significant moderating variables in the development of post-traumatic stress disorder. Secondly, we address the clinical assessment of post-traumatic stress disorder in sexually abused children, recommending a developmentally sensitive, multi-informant approach. Thirdly, we consider a family-wide cognitive-behavioural treatment framework for sexually abused children with post-traumatic stress disorder that involves both child and non-offending caregivers. Fourthly, we examine the results of recent evaluation studies supportive of cognitive-behavioural therapy in the treatment of sexually abused children. Lastly, we consider conclusions for clinical practice and directions for future research. © 2003 Taylor & Francis.
Kipnis, V 2003, 'Structure of Dietary Measurement Error: Results of the OPEN Biomarker Study', American Journal of Epidemiology, vol. 158, no. 1, pp. 14-21.
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Klanten, SO, Van Herwerden, L & Choat, JH 2003, 'Acquiring reef fish DNA sequences from formalin-fixed museum specimens', Bulletin of Marine Science, vol. 73, no. 3, pp. 771-776.
Konstantinov, K, Wang, J, Bewlay, S, Wang, GX, Liu, HK, Dou, SX & Ahn, JH 2003, 'Spray Pyrolysis Technique for Fabrication of Nano-Sized Spherical Agglomerated Oxide Powders for Batteries', Journal of Metastable and Nanocrystalline Materials, vol. 15-16, pp. 325-330.
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Application of the spray pyrolysis technique to in-situ fabrication ofnano-featured spherical oxide matcrials has been explored in this paper. Two different nano-featured single-phase materials for battery use, namely LiCOOl and PbO, were successfully prepared in spherical form. The diameters of the spheres are in the range of a few microns, generally 1-10 microns, and there is a narrow Gaussian particle size distribution. The diameter size can be controlled by the size of the spray nozzle and the concentration of the solution. The spherical agglomerates appear to consist of nano-particles, each one with dimensions of 20-50 run. The specific surface areas of these materials are several times higher than for the corresponding commercially available powders. The stoichiometry of the LiCoO, powders thus obtained was controlled by the ICP tcchnique in order to achieve the dcsired Li:Co = 1:1 ratio in the sintered materials. The materials prepared by the spray pyrolysis technique appear to be promising for battery use.
Krishna, G, Schulte, J, Cornell, BA, Pace, RJ & Osman, PD 2003, 'Tethered bilayer membranes containing ionic reservoirs: Selectivity and conductance', LANGMUIR, vol. 19, no. 6, pp. 2294-2305.
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Ion channels, such as gramicidin A, selectively facilitate the transport of ions across biological and synthetic membranes. The conductance properties of ion channels are frequently characterized in synthetic bilayer lipid membranes (BLMs). The instability of BLMs has seriously limited the range of applications for these structures, and tethered bilayer lipid membranes (tBLMs) have addressed the problem through tethering many of the membrane components to a solid surface. In the present study, thin gold substrates have been used to tether thiol- and disulfide-terminated membrane components to form a tBLM electrode to provide a reservoir for ions. This study reports on the ion selectivity and apparent permeability of gramicidin channels in such tethered bilayer membranes. The investigations using electrical impedance spectroscopy indicated that the magnitude of ionic conductance varies substantially in reservoirs with different chemical structures.
Langford, SJ & Yann, T 2003, 'Molecular Logic: A Half-Subtractor Based on Tetraphenylporphyrin', Journal of the American Chemical Society, vol. 125, no. 37, pp. 11198-11199.
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Langford, SJ & Yann, T 2003, 'Molecular Logic: A Half-Subtractor Based on Tetraphenylporphyrin [J. Am. Chem. Soc. 2003, 125, 11198−11199].', Journal of the American Chemical Society, vol. 125, no. 48, pp. 14951-14951.
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Langford, SJ, Lau, V-L, Lee, MAP & Lygris, E 2003, 'Porphyrin-Based Supermolecules and Supramolecular Arrays', ChemInform, vol. 34, no. 32.
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Langtry, T, Botten, L, Asatryan, A & McPhedran, R 2003, 'Monte Carlo modelling of imperfections in two-dimensional photonic crystals', Mathematics and Computers in Simulation, vol. 62, no. 3-6, pp. 385-393.
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In this paper we describe a Monte Carlo simulation of imperfections in photonic crystals, a new class of materials with optical properties that offer promise in a range of potential applications in the areas of information and communications technology. We describe the relevant physical and structural properties of these materials and outline the derivation of a theoretical model. We then present a Monte Carlo investigation of the tolerance of these materials to fabrication defects.
Langtry, T, Coupland, M & Moore, B 2003, 'Mathematica™ in context', International Journal of Mathematical Education in Science and Technology, vol. 34, no. 5, pp. 699-718.
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Langtry, TN, Asatryan, AA, Botten, LC, de Sterke, CM, McPhedran, RC & Robinson, PA 2003, 'Effects of disorder in two-dimensional photonic crystal waveguides', PHYSICAL REVIEW E, vol. 68, no. 2.
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Lapine, M, Gorkunov, M & Ringhofer, KH 2003, 'Nonlinearity of a metamaterial arising from diode insertions into resonant conductive elements', Physical Review E, vol. 67, no. 6.
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Lapine, M, Gorkunov, M & Ringhofer, KH 2003, 'Nonlinearity of a metamaterial arising from diode insertions into resonant conductive elements', Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, vol. 67, no. 6 2.
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It was demonstrated that with the help of simple electronic components, it was possible to construct a metamaterial which possesses nonlinear response. It was shown how the macroscopic properties of this material can be controlled by the characteristics of the structure elements, their arrangement, and the properties of nonlinear insertions. Thus, various processes known in nonlinear optics may be performed in the microwave range with the help of the proposed metamaterial.
Larkum, A, Koch, EW & Kuhl, M 2003, 'Diffusive boundary layers and photosynthesis of the epilithic algal community of coral reefs', Marine Biology, vol. 142, no. 5, pp. 1073-1082.
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The effects of mass transfer resistance due to the presence of a diffusive boundary layer on the photosynthesis of the epilithic algal community (EAC) of a coral reef were studied. Photosynthesis and respiration of the EAC of dead coral surfaces were investigated for samples from two locations: the Gulf of Aqaba, Eilat (Israel), and One Tree Reef on the Great Barrier Reef (Australia). Microsensors were used to measure O2 and pH at the EAC surface and above. Oxygen profiles in the light and dark indicated a diffusive boundary layer (DBL) thickness of 180590 ?m under moderate flow (~0.08 m s-1) and >2,000 ?m under quasi-stagnant conditions. Under light saturation the oxygen concentration at the EAC surface rose within a few minutes to 200550% air saturation levels under moderate flow and to 600700% under quasi-stagnant conditions. High maximal rates of net photosynthesis of 825 mmol O2 m-2 h-1 were calculated from measured O2 concentration gradients, and dark respiration was 1.33.3 mmol O2 m-2 h-1. From lightdark shifts, the maximal rates of gross photosynthesis at the EAC surface were calculated to be 16.5 nmol O2 cm-3 s-1. Irradiance at the onset of saturation of photosynthesis, Ek, was <100 µmol photons m-2 s-1, indicating that the EAC is a shade-adapted community. The pH increased from 8.2 in the bulk seawater to 8.9 at the EAC surface, suggesting that very little carbon in the form of CO2 occurs at the EAC surface. Thus the major source of dissolved inorganic carbon (DIC) must be in the form of HCO3-. Estimates of DIC fluxes across the DBL indicate that, throughout most of the daytime under in situ conditions, DIC is likely to be a major limiting factor for photosynthesis and therefore also for primary production and growth of the EAC.
Larkum, AWD 2003, 'Contributions of henrik lundegårdh.', Photosynthesis Research, vol. 76, no. 1/3, pp. 105-110.
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Henrik Lundegårdh made major contributions in the field of ecology and plant physiology from 1912 to 1969. His early work at Hallands Väderö in the Kattegat pioneered quantitative approaches to plant ecology and laid the understanding of carbon dioxide exchange in natural communities which is still useful today in global carbon accounting. Very early on in this work he invented the flame photometer. In trying to understand salt respiration of plants, he started to formulate hypotheses for the relationship between respiration and ion movement, including protons, hypotheses that were forerunners to the Chemiosmotic Hypothesis of Peter Mitchell. Necessarily, this involved work on plant cytochromes. He invented several early recording spectrophotometers and made many early discoveries in the field of plant cytochromes, including the photo-oxidation of cytochrome f in photosynthesis.
Larkum, AWD, Koch, EMW & Kuhl, M 2003, 'Diffusive boundary layers and photosynthesis of the epilithic algal community of coral reefs', MARINE BIOLOGY, vol. 142, no. 6, pp. 1073-1082.
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Leigh, A & Nicotra, AB 2003, 'Sexual dimorphism in reproductive allocation and water use efficiency in Maireana pyramidata (Chenopodiaceae), a dioecious, semi-arid shrub', Australian Journal of Botany, vol. 51, no. 5, pp. 509-509.
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Sexual dimorphism in dioecious plant species is widely attributed to the differential impacts of reproduction on male v. female plants. We investigated sexual dimorphism in reproductive, morphological and physiological traits of Maireana pyramidata (Benth.) Paul G.Wilson (Chenopodiaceae), a dioecious, semi-arid shrub endemic to Australia. We estimated reproductive allocation for each sex by calculating the relative biomass allocated to flowers and fruits per gram of leaf tissue, based on one branch per sample plant. Morphological measurements included leaf mass, stem mass, specific leaf area, plant height and plant leaf area index. We also measured leaf nitrogen and chlorophyll, gas exchange and Δ13C. Reproductive allocation was nine times greater in females than in males. No significant difference between the sexes in photosynthetic rate or transpiration could be detected but instantaneous water use efficiency (photosynthesis/transpiration) was significantly lower in females than in males during the fruiting period. Δ13C did not differ between the sexes. The results indicate that greater reproductive allocation in females has an immediate impact on their capacity for conservative water use but does not lead to long-term differences in water use efficiency.
Leitch, EC, Fergusson, CL & Henderson, RA 2003, 'Arc to craton provenance switching in a Late Palaeozoic subduction complex, Wandilla and Shoalwater terranes, New England Fold Belt, eastern Australia', Australian Journal of Earth Sciences, vol. 50, no. 6, pp. 919-929.
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The Wandilla and Shoalwater terranes of the northern New England Fold Belt are accretionary subduction complexes formed during the Carboniferous at the convergent plate boundary that extended along the eastern edge of Palaeozoic Gondwana. Sandstones from the Wandilla terrane are quartz-poor and quartz-intermediate lithic or feldspathic volcanic sandstones that were derived principally from the associated magmatic arc, whereas those of the Shoalwater terrane are quartz-rich and were sourced from a cratonic region dominated by low-grade metamorphic and granitic rocks.The location of the Shoalwater source cannot be determined unambiguously but probably was situated to the north with detritus supplied longitudinally to the convergent plate boundary. At that time arc-derived sediment was confined to the forearc basin behind an outer arc ridge, the physiographic manifestation of the accreted rocks of the Wandilla terrane. The tectonic situation may have been similar to that of the present-day Lesser Antilles subduction system where quartzose sediment carried down the Orinoco River is transported northward and incorporated into the Barbados Ridge subduction complex.
Lenzen, M, Murray, SA, Korte, B & Dey, CJ 2003, 'Environmental impact assessment including indirect effects—a case study using input–output analysis', Environmental Impact Assessment Review, vol. 23, no. 3, pp. 263-282.
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Leslie, LM & Speer, MS 2003, 'Comment on Modelling a coastal ridging event over south-eastern Australia C. J. C. Reason and P. L. Jackson (Meteorological Applications 2002, 9: 383-397)', Meteorological Applications, vol. 10, no. 3, pp. 293-294.
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Leslie, LM & Speer, MS 2003, 'Prediction of extreme rainfall for the coffs harbour catchment', Australian Meteorological Magazine, vol. 52, no. 2, pp. 95-100.
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On 23 November, 1996 a flash flood struck Coffs Harbour, New South Wales, Australia, resulting from rainfall totals of up to 400 mm, in just 4.5 hours, recorded in the 50 km2 Coffs Harbour Creek catchment. Twenty-four hour rainfall totals exceeded 500 mm at some higher elevations. One person was killed and there was an estimated damage bill of A$30 million. The event was simulated using the non-hydrostatic version of the University of New South Wales HIRES mesoscale model, which predicted rainfall totals similar in pattern and amount to the few observations available. The synoptic and mesoscale mechanisms responsible for the heavy rain were well-defined for this event. Focussing on these mechanisms, a perturbation methodology was used to vary the initial conditions provided to the HIRES model, within the range of known present climate values. The ensemble of HIRES model rainfall forecasts from these perturbed initial conditions suggests that, even under current climate conditions, the Coffs Harbour flash flood rainfall totals could have been much higher. For example, the largest 24-hour model-predicted rainfall amounts over the hilly, data-sparse parts of the Coffs Harbour catchment were 2.5 to 3.5 times that predicted for the near-coastal station of Coffs Harbour Airport. This was true for both the unperturbed model prediction and for the highest 16 per cent of the perturbed model runs. Such information is valuable as it has significant implications for quantitative precipitation forecast (QPF) estimates and associated flood mitigation strategies. Finally, the perturbation methodology was also applied to four other flood events in 1991, 1989, 1977 and 1974, and the results are briefly compared and contrasted with the November 1996 storm.
Levey, FC, Cortie, MB & Cornish, LA 2003, 'Determination of the 76 wt.% Au section of the Al-Au-Cu phase diagram', JOURNAL OF ALLOYS AND COMPOUNDS, vol. 354, no. 1-2, pp. 171-180.
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The substitution of Al for Cu along the 76 wt.% Au section of the Al-Au-Cu system causes the phase of the Au-Cu edge to be successively replaced by a ternary electron compound, a ternary extension of the Cu-Al electron compound, designated here as ', and finally the compound AuAl2. A vertical section of this part of the phase diagram has been determined and is presented here, and the relationships between the phases explored. It is considered likely that the section contains the peritectic reactions L+-> and L+'->. Both the and the phases form ordered phases at lower temperatures.
Li, L, Gu, H & Chen, J 2003, 'Insertion heuristic algorithm in complex PDPTW problem', Jisuanji Gongcheng/Computer Engineering, vol. 29, no. 16, p. 65.
Liang, H 2003, 'The relationship between virologic and immunologic responses in AIDS clinical research using mixed-effects varying-coefficient models with measurement error', Biostatistics, vol. 4, no. 2, pp. 297-312.
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Lindsay, MJ, Wang, GX & Liu, HK 2003, 'Al-based anode materials for Li-ion batteries', Journal of Power Sources, vol. 119-121, pp. 84-87.
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Littleton, HL & Ollendick, T 2003, 'Negative body image and disordered eating behavior in children and adolescents: What places youth at risk and how can these problems be prevented?', Clinical Child and Family Psychology Review, vol. 6, no. 1, pp. 51-66.
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Liu, GJ, Simpson, AM, Swan, MA, Tao, C, Tuch, BE, Crawford, RM, Jovanovic, A & Martin, DK 2003, 'ATP-sensitive potassium channels induced in liver cells after transfection with insulin cDNA and the GLUT2 transporter regulate glucose-stimulated insulin secretion', FASEB JOURNAL, vol. 17, no. 10, pp. 1682-+.
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As part of our research into the liver-directed gene therapy of Type I diabetes, we have engineered a human hepatoma cell line (HEPG2ins/g cells) to store and secrete insulin to a glucose stimulus. The aim of the present study was to determine whether HEPG2ins/g cells respond to glucose via signaling pathways that depend on ATP-sensitive potassium channels (KATP). Using patch-clamp electrophysiology with symmetrical KCl solutions, the single-channel conductance of KATP was 61pS. KATP was inhibited by ATP (1 mM) or cAMP (50 microM) applied to the cytosolic side of the membrane. Single KATP channels and macroscopic whole-cell currents were inhibited by glucose (20 mM) and glibenclamide (20 microM) and were activated by diazoxide (150 microM). Immunoprecipitation and Western blot analysis confirmed the presence of Kir6.2 KATP channel subunit protein in HEPG2ins/g and HEPG2ins cells. Using radioimmunoassay techniques, we report that exposure of the cells to tolbutamide (100 microM) resulted in an increase in insulin secretion from 0.3 +/- 0.05 to 1.8 +/- 0.2 pmol insulin/10(6) cells and glibenclamide (20 microM) from 0.4 +/- 0.06 to 2.1 +/- 0.3 (n=4), similar to what is seen on glucose (20 mM) stimulation. Diazoxide (150 microM) completely inhibited glucose-stimulated insulin release. Glucose 20 mM and glibenclamide 100 microM increased intracellular Ca2+ level in the HEPG2ins/g cells. However, glucose 20 mM did not stimulate a rise in intracellular Ca2+ in the un-transfected parent cell-line HEPG2. We used confocal microscopy to confirm that glucose (20 mM) stimulated the release of insulin from the fluorescently labeled secretion granules in the cells. Furthermore, glibenclamide (20 microM) also stimulated the release of insulin from fluorescently labeled secretion granules, and diazoxide (150 microM) blocked that stimulated release of insulin. Our results suggest that HEPG2ins/g cells respond to glucose via signaling pathways that depend on KATP, similar to a norm...
Liu, S, Leslie, L, Speer, M, Bunker, R & Morison, R 2003, 'Approaching realistic soil moisture status with an improved mesoscale numerical weather prediction model', IAHS-AISH Publication, no. 282, pp. 315-320.
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An advanced soil moisture scheme (Richards) is coupled to a high resolution numerical weather prediction model (HIRES) replacing the original Force-Restore scheme and changing other related processes. The new scheme now provides HIRES with an upper and lower bound for soil moisture through a process of checking model precipitation that is used to calculate soil moisture. A comparison of HIRES model results is presented using the new and original soil moisture schemes applied to the Goulburn River catchment in southeastern Australia. It is shown that precipitation is the most important factor to be considered before introducing an advanced scheme to correctly simulate soil moisture. It is also shown that, based on the correct precipitation input, the Richards scheme provides a more realistic soil moisture profile. Improving model soil moisture will ultimately provide better estimates of forest fire danger indices used as guidance by weather forecasters in assessing bushfire risk.
Lohstroh, PN, Chen, JG, Ba, JM, Ryan, LM, Xu, XP, Overstreet, JW & Lasley, BL 2003, 'Bone resorption is affected by follicular phase length in female rotating shift workers', ENVIRONMENTAL HEALTH PERSPECTIVES, vol. 111, no. 4, pp. 618-622.
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Stressors as subtle as night work or shift work can lead to irregular menstrual cycles, and changes in reproductive hormone profiles can adversely affect bone health. This study was conducted to determine if stresses associated with the disruption of regular work schedule can induce alterations in ovarian function which, in turn, are associated with transient bone resorption. Urine samples from 12 rotating shift workers from a textile mill in Anqing, China, were collected in 1996-1998 during pairs of sequential menstrual cycles, of which one was longer than the other (28.4 vs. 37.4 days). Longer cycles were characterized by a prolonged follicular phase. Work schedules during the luteal-follicular phase transition (LFPT) preceding each of the two cycles were evaluated. All but one of the shorter cycles were associated with regular, forward phase work shift progression during the preceding LFPT. In contrast, five longer cycles were preceded by a work shift interrupted either by an irregular shift or a number of "off days." Urinary follicle-stimulating hormone levels were reduced in the LFPT preceding longer cycles compared with those in the LFPT preceding shorter cycles. There was greater bone resorption in the follicular phase of longer cycles than in that of shorter cycles, as measured by urinary deoxypyridinoline. These data confirm reports that changes in work shift can lead to irregularity in menstrual cycle length. In addition, these data indicate that there may be an association between accelerated bone resorption in menstrual cycles and changes of regularity in work schedule during the preceding LFPT.
Low, JA, Chan, DKY, Hung, WT & Chye, R 2003, 'Treatment of recurrent aspiration pneumonia in end-stage dementia: preferences and choices of a group of elderly nursing home residents', INTERNAL MEDICINE JOURNAL, vol. 33, no. 8, pp. 345-349.
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Lutherborrow, M, Simpson, AM & Tuch, BE 2003, 'Microarray Analysis Of A Beta Cell Surrogate: The Insulin Producing Liver Cell Line Hep G2ins/g', Journal Of Gene Medicine, vol. 5, no. 5, pp. 1-2.
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Macinnis-Ng, CMO & Ralph, PJ 2003, 'In situ impact of petrochemicals on the photosynthesis of the seagrass Zostera capricorni', MARINE POLLUTION BULLETIN, vol. 46, no. 11, pp. 1395-1407.
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Macinnis-Ng, CMO & Ralph, PJ 2003, 'Short-term response and recovery of Zostera capricorni photosynthesis after herbicide exposure', AQUATIC BOTANY, vol. 76, no. 1, pp. 1-15.
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Maharaj, F, McDonagh, A, Scudder, M, Craig, D & Dance, I 2003, 'Crystal packing principles for ferrocenyl groups linked by polyyne chains: dimorphism of Fc-C4-Fc', CrystEngComm, vol. 5, no. 53, pp. 305-305.
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The crystal structure and packing of a new dimorph ( 2B) of 1,4-diferrocenyl-1,3-butadiyne (Fc-C4-Fc, 2) is described and analysed, and compared with the different crystal packing of dimorph 2A. This analysis is made in the context of the polymorphic crystal packing of ferrocene ( 1), and the crystal packing of 1,8-diferrocenyl-octatetrayne, Fc-C4-Fc. In 2B the packing is layered, allowing the Fc groups to be organised in approximately square arrays of well-developed edge-to-face (EF) motifs, very similar to the arrangement in the monoclinic and triclinic polymorphs of ferrocene. The C4 chains are sandwiched between the Fc layers in 2B. The same molecule in 2A is packed with some offset-face-to-face (OFF) motifs between Fc groups, and with a motif in which C4 chains occupy the grooves between cyclopentadienyl rings of Fc. In FcC8Fc the packing is dominated by the C8 chains, surrounded by six molecules, two of which present cyclopentadienyl faces to the C8 chain, and four present the groove in the ferrocenyl group, with no EF or OFF motifs. In this progression of structure types and intermolecular motifs for molecules Fc-Cn-Fc, the members with C4 occur at the transition between the ferrocenyl dominant intermolecular motifs and the Cn chain dominant features. Dimorph 2A is like the longer chain structure, while 2B is like ferrocene.
Mallinckrodt, CH, Sanger, TM, Dubé, S, DeBrota, DJ, Molenberghs, G, Carroll, RJ, Potter, WZ & Tollefson, GD 2003, 'Assessing and interpreting treatment effects in longitudinal clinical trials with missing data', Biological Psychiatry, vol. 53, no. 8, pp. 754-760.
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Treatment effects are often evaluated by comparing change over time in outcome measures; however, valid analyses of longitudinal data can be problematic, particularly if some data are missing. For decades, the last observation carried forward (LOCF) approach has been a common method of handling missing data. Considerable advances in statistical methodology and our ability to implement those methods have been made in recent years. Thus, it is appropriate to reconsider analytic approaches for longitudinal data. This review examines the following from a clinical perspective: 1) the characteristics of missing data that influence analytic choices; 2) the attributes of common methods of handling missing data; and 3) the use of the data characteristics and the attributes of the various methods, along with empirical evidence, to develop a robust approach for the analysis and interpretation of data from longitudinal clinical trials. We propose that, in many settings, the primary efficacy analysis should use a repeated measures, likelihood-based, mixed-effects modeling approach, with LOCF used as a secondary, composite measure of efficacy, safety, and tolerability. We illustrate how repeated-measures analyses can be used to enhance decision-making, and we review the caveats that remain regarding the use of LOCF as a composite measure. © 2003 Society of Biological Psychiatry.
Matic, JN, Wilton, JL, Towers, RJ, Scarman, AL, Minion, FC, Walker, MJ & Djordjevic, SP 2003, 'The pyruvate dehydrogenase complex of Mycoplasma hyopneumoniae contains a novel lipoyl domain arrangement', Gene, vol. 319, pp. 99-106.
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The genes encoding the pyruvate dehydrogenase (PDH) complex (pdhA, pdhB, pdhC and pdhD) from Mycoplasma hyopneumoniae have been cloned and sequenced. The genes are arranged into two operons, designated pdhAB and pdhCD, which are not found together in the chromosome. The pdhA, pdhB, pdhC and pdhD genes encode proteins of predicted molecular masses of 44.2 kDa (pyruvate dehydrogenase major subunit; E1?), 36.6 kDa (pyruvate dehydrogenase minor subunit; E1?), 33.1 kDa (dihydrolipoyl acetyltransferase; E2) and 66.3 kDa (dihydrolipoyl dehydrogenase; E3), respectively. Sequence analysis of the pdhCD operon revealed the presence of a lipoyl-binding domain in pdhD but not in pdhC. The lipoyl domain is believed to act as a swinging arm that spans the gaps between the catalytic domains of each of the subunits. Portions of the N-terminal regions of pdhA and pdhD were expressed as 6×His-tag fusion proteins in Escherichia coli and purified by nickel affinity chromatography. The purified proteins were used to raise antibodies in rabbits, and Western blot analysis was performed with the polyclonal rabbit antiserum. Both the pdhA and pdhD genes were expressed among various strains of M. hyopneumoniae as well as the porcine mycoplasmas, Mycoplasma hyorhinis and Mycoplasma flocculare. Southern hybridisation analysis using probes from pdhA and pdhD detected one copy of each gene in the chromosome of M. hyopneumoniae. Since previous studies have shown pyruvate dehydrogenase activity in M. hyopneumoniae [J. Gen. Microbiol. 134 (1988) 791], it appears likely that a functional lipoyl-binding domain in the N terminus of PdhC is not an absolute prerequisite for pyruvate dehydrogenase enzyme activity. We hypothesise that the lipoyl-binding domain of PdhD is performing the enzymatic function normally attributed to the PdhC lipoyl-binding domain in other organisms.
McArthur, JD, West, NP, Cole, JN, Jungnitz, H, Guzmán, CA, Chin, J, Lehrbach, PR, Djordjevic, SP & Walker, MJ 2003, 'An aromatic amino acid auxotrophic mutant ofBordetella bronchisepticais attenuated and immunogenic in a mouse model of infection', FEMS Microbiology Letters, vol. 221, no. 1, pp. 7-16.
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We have constructed an aromatic amino acid auxotrophic mutant of Bordetella bronchiseptica, harbouring mutations in aroA and trpE to investigate the use of such a strain as a live-attenuated vaccine. B. bronchiseptica aroA trpE was unable to grow in minimal medium without aromatic supplementation. Compared to the parental wild-type strain, the mutant displayed significantly reduced abilities to invade and survive within the mouse macrophage-like cell line J774A.1 in vitro and in the murine respiratory tract following experimental intranasal infection. Mice vaccinated with B. bronchiseptica aroA trpE displayed significant dose-dependent increases in B. bronchiseptica-specific antibody responses, and exhibited increases in the number of B. bronchiseptica-reactive spleen cells in lymphoproliferation assays. Immunised animals were protected against lung colonisation after challenge with the wild-type parental strain. With such a broad host range displayed by B. bronchiseptica, the attenuated strain constructed in this study may not only be used for the prevention of B. bronchiseptica-associated disease, but also for the potential delivery of heterologous antigen.
McClean, MA, Matheson, MJ, McKay, K, Johnson, PRA, Rynell, A-C, Ammit, AJ, Black, JL & Berend, N 2003, 'Low lung volume alters contractile properties of airway smooth muscle in sheep', European Respiratory Journal, vol. 22, no. 1, pp. 50-56.
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McDonagh, AM, Powell, CE, Morrall, JP, Cifuentes, MP & Humphrey, MG 2003, 'Convergent Synthesis of Alkynylbis(bidentate phosphine)ruthenium Dendrimers', Organometallics, vol. 22, no. 7, pp. 1402-1413.
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The "first-generation" alkynylruthenium dendrimers 1,3,5-C6H3(4-CCC6H4CC-trans-[Ru(dppe)2]CC-3,5-C6H3{4-CCC6H4CC-trans-[Ru(4-CCC6H4R)(dppe)2]}2)3 [R = H (19), NO2 (20)], containing nine dialkynylruthenium centers, have been prepared by convergent synthesis. Reaction of 3 equiv of 1-iodo-4-trimethylsilylethynylbenzene with triethynylbenzene, under Sonogashira coupling conditions, followed by deprotection with tetra-n-butylammonium fluoride affords 1,3,5-C6H3(4-CCC6H4CCH)3 (2), which is reacted with cis-[RuCl2(L)2] (L = dppe, dppm) to afford the octopolar, triruthenium dendritic cores 1,3,5-C6H3{4-CCC6H4CC-trans-[RuCl(L)2]}3 [L = dppe (5), L = dppm (6)] via the vinylidene intermediates [1,3,5-C6H3{4-CCC6H4CH=C-trans-[RuCl(L)2]}3](PF6)3 [L = dppe (3), L = dppm (4)]. Reaction of 5 with terminal alkynes 4-HCCC6H4R (R = H, NO2, NEt2) affords a series of related dialkynylruthenium zero-generation dendrimers 1,3,5-C6H3{4-CCC6H4CC-trans-[Ru(4-CCC6H4R)(dppe)2]}3 [R = H (7), NO2 (8), NEt2 (9)]. Reaction of 3 equiv of trans-[Ru(4-CCC6H4CCH)(CCPh)(dppe)2] with 1,3,5-triiodobenzene under Sonogashira coupling conditions also affords 7, together with the homo-coupled trans,trans-[(dppe)2(PhCC)Ru(4,4'-CCC6H4CCCCC6H4CC)Ru(CCPh)(dppe)2]. The first-generation dendrimers 19 and 20 are prepared by coupling core 5 with the dendrons 1-(HCC)C6H3-3,5-{4-CCC6H4CC-trans-[Ru(4-CCC6H4R)(dppe)2]}2 [R = H (17), NO2 (18)].
McDougald, D, Srinivasan, S, Rice, SA & Kjelleberg, S 2003, 'Signal-mediated cross-talk regulates stress adaptation in Vibrio species', Microbiology, vol. 149, no. 7, pp. 1923-1933.
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Quorum sensing systems serve as a means of ‘census taking’ of conspecific and non-conspecific bacteria in the near vicinity. The acylated homoserine lactone (AHL) quorum sensing system has been proposed to be primarily an intra-specific communication system, while the AI-2 autoinducer signalling system is proposed to be an interspecific communication system. Here it is shown that AI-2-like signalling in two marineVibriospecies,Vibrio vulnificusand ‘Vibrio angustum’ S14, induces the core response phenotypes of starvation adaptation and stress resistance, and that a signal antagonist can competitively inhibit these phenotypes. Furthermore, the signals produced by a range ofVibriospecies have the ability to induce these phenotypes inV. vulnificusand ‘V. angustum’ S14, indicating that, at least inVibriospecies, AI-2-like signalling systems function as interspecies communication systems capable of ‘cross-talk’ and of regulating environmentally relevant phenotypes.
McDougald, D, Srinivasan, S, Rice, SA & Kjelleberg, S 2003, 'Signal-mediated cross-talk regulates stress adaptation in Vibrio species', Microbiology, vol. 149, no. 7, pp. 1923-1933.
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Quorum sensing systems serve as a means of 'census taking' of conspecific and non-conspecific bacteria in the near vicinity. The acylated homoserine lactone (AHL) quorum sensing system has been proposed to be primarily an intra-specific communication system, while the AI-2 autoinducer signalling system is proposed to be an interspecific communication system. Here it is shown that AI-2-like signalling in two marine Vibrio species, Vibrio vulnificus and 'Vibrio angustum' S14, induces the core response phenotypes of starvation adaptation and stress resistance, and that a signal antagonist can competitively inhibit these phenotypes. Furthermore, the signals produced by a range of Vibrio species have the ability to induce these phenotypes in V. vulnificus and 'V. angustum' S14, indicating that, at least in Vibrio species, AI-2-like signalling systems function as interspecies communication systems capable of 'cross-talk' and of regulating environmentally relevant phenotypes.
McGrath, KCY, Sader, MA, Nakhla, S, Handelsman, DJ, Celermajer, DS & Death, AK 2003, 'Androgen exposure increases human monocyte adhesion to vascular endothelium via Up-regulation of VCAM-1 expression in a gender specific manner', Heart, Lung and Circulation, vol. 12, no. 2, pp. A47-A47.
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McKee, BA, Djordjevic, SP, Goodman, RD & Hornitzky, MA 2003, 'The detection of Melissococcus pluton in honey bees (Apis mellifera) and their products using a hemi-nested PCR', Apidologie, vol. 34, no. 1, pp. 19-27.
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A hemi-nested polymerase chain reaction (PCR) was further developed for the detection of Melissococcus pluton in adult bees and honey bee products. A chloroform:isoamyl alcohol DNA extraction method was used to provide template from 154 samples of adult bee tissues, honey, pollen, whole larvae and comb cells. All 36 honey bee samples tested from a diseased colony were shown to contain M. pluton and sub-clinical infections were detected in adult bee tissues, larvae and honey (49/98; 50.0%) collected from all 9 healthy colonies from areas where EFB was endemic. All 20 adult bee tissue samples from a healthy colony from Western Australia where EFB has never been reported were negative. Of 80 bulk honey samples from six Australian states, 55 of 80 (68.8%) samples were shown to contain M. pluton whereas culture techniques detected M. pluton in 22 of 80 (27.5%) of these samples. M. pluton was detected in honey from all Australian states except Western Australia.
McPhedran, RC, Nicorovici, NA, McKenzie, DR, Rouse, GW, Botten, LC, Welch, V, Parker, AR, Wohlgennant, M & Vardeny, V 2003, 'Structural colours through photonic crystals', PHYSICA B-CONDENSED MATTER, vol. 338, no. 1-4, pp. 182-185.
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We discuss two examples of living creatures using photonic crystals to achieve iridescent colouration. The first is the sea mouse (Aphroditidae, Polychaeta), which has a hexagonal close packed structure of holes in its spines and lower-body felt, while the second is the jelly fish Bolinopsis infundibulum, which has an oblique array of high index inclusions in its antennae. We show by measurements and optical calculations that both creatures can achieve strong colours despite having access only to weak refractive index contrast.
Mellman, TA, Clark, RE & Peacock, WJ 2003, 'Prescribing Patterns for Patients With Posttraumatic Stress Disorder', Psychiatric Services, vol. 54, no. 12, pp. 1618-1621.
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Objective: The little information available about prescribing patterns for persons with posttraumatic stress disorder comes from male combat-veteran populations treated through programs of the Department of Veterans Affairs. The objective of this study was to comprehensively evaluate prescribing patterns for persons with a diagnosis of posttraumatic stress disorder (PTSD) in a community-based nonveteran sample in which women were well represented. Methods: Prescription claims paid in December 1999 for New Hampshire Medicaid recipients with diagnostic codes for PTSD were analyzed. Frequencies of prescriptions for categories of medication were compared between patients with PTSD (N=165) and patients with major depression alone (N=2,208) and those with major depression co-occurring with PTSD (N=171). Results: The patients with PTSD were predominantly women who were receiving services at community mental health centers. Selective serotonin re-uptake inhibitors were more frequently prescribed for major depression (32 percent of cases) than for PTSD (23 percent). Other novel anti-depressants were more frequently prescribed for major depression co-occurring with PTSD (25 percent of cases) than for major depression alone (18 percent). Atypical antipsychotic medications were more frequently prescribed for PTSD (17 percent of cases) and for major depression co-occurring with PTSD (20 percent) than for major depression alone (9 percent). Benzodiazepines and related hypnotics, trazodone, and mood stabilizers were more frequently prescribed for major depression co-occurring with PTSD than for major depression alone. Conclusions: The findings suggest that many outpatients who have PTSD are treated aggressively with medication, particularly when PTSD co-occurs with major depression, and that there are discrepancies between actual prescribing patterns and prescribing guidelines.
Mezzetti, M, Ibrahim, JG, Bois, FY, Ryan, LM, Ngo, L & Smith, TJ 2003, 'A Bayesian compartmental model for the evaluation of 1,3-butadiene metabolism', JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS, vol. 52, pp. 291-305.
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We propose a Bayesian model for physiologically based pharmacokinetics of 1,3-butadiene (BD). BD is classified as a suspected human carcinogen and exposure to it is common, especially through cigarette smoke as well as in urban settings. The main aim of the methodology and analysis that are presented here is to quantify variability in the rates of BD metabolism by human subjects. A three-compartmental model is described, together with informative prior distributions for the population parameters, all of which represent real physiological variables. The model is described in detail along with the meanings and interpretations of the associated parameters. A four-compartment model is also given for comparison. Markov chain Monte Carlo methods are described for fitting the model proposed. The model is fitted to toxicokinetic data obtained from 133 healthy subjects (males and females) from the four major racial groups in the USA, with ages ranging from 19 to 62 years. Subjects were exposed to 2 parts per million of BD for 20 min through a face mask by using a computer-controlled exposure and respiratory monitoring system. Stratification by ethnic group results in major changes in the physiological parameters. Sex and age were also tested but not found to have a significant effect.
Mi, D, Chen, M, Lin, S, Lince, M, Larkum, AWD & Blankenship, RE 2003, 'Excitation Dynamics in the Core Antenna in the Photosystem I Reaction Center of the Chlorophyll d-Containing Photosynthetic Prokaryote Acaryochloris marina', The Journal of Physical Chemistry B, vol. 107, no. 6, pp. 1452-1457.
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Transient absorption difference spectroscopy on the picosecond time scale was used to study the ultrafast excitation dynamics in the photosystem I core antenna in Acaryochloris marina, a newly discovered marine oxygenic photosynthetic prokaryote that contains chlorophyll d as its major photopigment. Photosystem I particles were isolated using a detergent treatment of the thylakoid membranes and sucrose gradient ultracentrifugation. Steady-state fluorescence measurements at both room temperature and 77 K as well as ultrafast transient absorbance and fluorescence measurements were carried out on photosystem I. For ultrafast transient absorbance measurements, the sample was excited at 720, 740, and 75 nm with either high or low excitation energy. In each case, after a rapid (subpicosecond) energy transfer, the excitation energy resided on pigments absorbing at 710 nm. A kinetic component of about 40 ps and a nondecaying component on the order of nanoseconds were resolved. The 40-ps component was assigned to the trapping of excitation energy into the reaction center. The trapping time was confirmed by time-resolved fluorescence measurements. The 40-ps trapping time, because of the formation of a charge-separated state in the reaction center, is nearly excitation wavelength-independent. Narrow spectral-band excitations (5-nm fwhm) at 690, 720, 730, and 740 nm were used to excite different pools of the photosystem I core antenna selectivity. The initial special changes show a strong excitation wavelength dependence. An exceptionally broad, prompt bleaching, spanning from 700 to 740 nm, was induced when excitation was directly into the primary electron donor, P740, suggesting the existence of an excitonic coupling between a group of pigments, most likely the reaction center cofactors. A 2-3-ps energy equilibration process was also observed, similar to that observed in other cyanobacterial photosystem I. No evidence was found for a pool of long-wavelength antenna pigment...
Migocki, M & Harry, L 2003, 'Splitting up: a time and place for it in bacteria', Australian Biochemist, vol. April.
Mikajlo, EA & Ford, MJ 2003, 'Energy and momentum resolved band structure of K2O: electron momentum spectroscopy and linear combination of atomic orbitals calculation', JOURNAL OF PHYSICS-CONDENSED MATTER, vol. 15, no. 41, pp. 6955-6968.
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This paper details an experimental and theoretical investigation into the electronic structure of the highly ionic, alkali oxide, potassium oxide (K2O). The experiments were carried out using the relatively new technique of electron momentum spectroscopy. This is an electron impact technique that is capable of measuring the electron intensity distribution as a function of energy and momentum. Calculations were performed within the linear combination of atomic orbitals approximation using both HartreeFock and density functional theory formalisms. We have been able to map the band dispersions and intensities in the oxygen valence bands and potassium 3p and 3s bands for the first time. Overlap of the O 2s and K 3p binding energy peaks makes it difficult to extract the band gaps involving either of these bands. The O 2p and K 3s peaks are resolved, however, and we observe a gap of 30.4 ± 0.2 eV. This value is reproduced by the PBE0 calculation. Intensities within the s bands are reproduced well by all our calculations, whereas the observed p bands show anomalous intensity at the ?-point, which is not present in any of the calculations.
Mikajlo, EA, Nixon, KL & Ford, MJ 2003, 'Electron momentum spectroscopy and linear combination of atomic orbitals calculation of bulk Na2O', JOURNAL OF PHYSICS-CONDENSED MATTER, vol. 15, no. 13, pp. 2155-2168.
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This paper presents an experimental measurement of the electronic structure of Na2O in the solid phase using electron momentum spectroscopy and compares the results with ab initio calculations performed within the linear combination of atomic orbitals (LCAO) approximation. While HartreeFock (HF) can reproduce elastic properties we find it overestimates splitting of the oxygen valence bands by around 30% and the width of the O 2p band by a factor of 2. Our experimental values are 15.85 ± 0.2 and 0.6 ± 0.2 eV for these two quantities, respectively. Density functional methods are significantly better, with the hybrid functional PBE0 predicting the oxygen bandgap to within the experimental error. PBE0 also gives the best estimate of the Na core level energies. In contrast, HF performs best for the splitting between the oxygen and sodium bands. Our experimental values of 32.85 ± 0.2 and 27.45 ± 0.2 eV for the Na 2pNa 2s and O 2pNa 2p splittings agree well with previous measurements. Distribution of electron density both within the bands and between the bands is not reproduced by any of the computational methods employed.
Mitakakis, T, O'meara, T & Tovey, E 2003, 'The effect of sunlight on allergen release from spores of the fungus Alternaria', Grana, vol. 42, no. 1, pp. 43-46.
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Mitrovic, SM, Howden, CG, Bowling, LC & Buckney, RT 2003, 'Unusual allometry between in situ growth of freshwater phytoplankton under static and fluctuating light environments: possible implications for dominance', JOURNAL OF PLANKTON RESEARCH, vol. 25, no. 5, pp. 517-526.
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Mitrovic, SM, Oliver, RL, Rees, C, Bowling, LC & Buckney, RT 2003, 'Critical flow velocities for the growth and dominance of Anabaena circinalis in some turbid freshwater rivers', FRESHWATER BIOLOGY, vol. 48, no. 1, pp. 164-174.
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Mohammed, OB, Davies, AJ, Hussein, HS, Daszak, P & Ellis, JT 2003, 'Hammondia heydorni from the Arabian mountain gazelle and red fox in Saudi Arabia', JOURNAL OF PARASITOLOGY, vol. 89, no. 3, pp. 535-539.
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Moore, CM, Suggett, D, Holligan, PM, Sharples, J, Abraham, ER, Lucas, MI, Rippeth, TP, Fisher, NR, Simpson, JH & Hydes, DJ 2003, 'Physical controls on phytoplankton physiology and production at a shelf sea front: a fast repetition-rate fluorometer based field study', Marine Ecology Progress Series, vol. 259, pp. 29-45.
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Observations of phytoplankton physiology collected using a fast repetition-rate fluorometer (FRRF) in the vicinity of a shelf-sea tidal-mixing front are presented. These data are combined with more traditional 14C-based measurements and observations of environmental parameters, including estimates of turbulent dissipation rates, in order to investigate the influence of physical forcing on the productivity of the system. Low nutrient concentrations on the stratified side of the front result in a reduction of photosynthetic efficiency. Conversely, the high degree of vertical mixing on the mixed side of the front constrains the ability of phytoplankton to adjust their photosynthetic apparatus to the ambient irradiance field. Redistribution of phytoplankton biomass and variations in physiological parameters also result from the spring-neap tidal cycle. FRRF- and 14C-derived physiological measurements are compared in the context of environmental gradients in the region. A strong correlation was found between independently measured functional absorption cross-sections (sPSII) and maximal photosynthetic rates (P*max). Such a relationship was unlikely to have been causative and may have resulted from shifts in the balance between light-harvesting and carbon fixation across the front. The association of changes in P*max with variations in sPSII provided the basis for the development of an empirical model, specific to the system and time of study, which utilised FRRF data to extrapolate between primary productivity rates measured at fixed sites. When applied to high resolution cross-frontal data, the model suggested small-scale variations in productivity related to both spatial and temporal physical forcing including the spring-neap cycle.
Morris, JS, Vannucci, M, Brown, PJ & Carroll, RJ 2003, 'Rejoinder', Journal of the American Statistical Association, vol. 98, no. 463, pp. 591-597.
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Morrison, DA & Ellis, JT 2003, 'The design and analysis of microarray experiments: applications in parasitology', DNA AND CELL BIOLOGY, vol. 22, no. 6, pp. 357-394.
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Mungkornasawakul, P, Pyne, SG, Jatisatienr, A, Supyen, D, Lie, W, Ung, AT, Skelton, BW & White, AH 2003, 'Stemocurtisine, the first pyrido[1,2-a]azapine Stemona alkaloid', JOURNAL OF NATURAL PRODUCTS, vol. 66, no. 7, pp. 980-982.
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A new pentacyclic stemona alkaloid, stemocurtisine (2), with a novel pyrido[1,2-a]azapine A,B-ring system, has been isolated from a root extract of Stemona curtisii. The structure and relative stereochemistry was determined by spectral data interpretation and X-ray crystallography
Mungkornasawakul, P, Pyne, SG, Jatisatienr, A, Supyen, D, Lie, W, Ung, AT, Skelton, BW & White, AH 2003, 'Stemocurtisine, the first pyrido[1,2-a]azapine Stemona alkaloid. (vol 66, pg 980, 2003)', JOURNAL OF NATURAL PRODUCTS, vol. 66, no. 10, pp. 1404-1404.
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Muris, P, Bodden, D, Merckelbach, H, Ollendick, TH & King, N 2003, 'Fear of the beast: a prospective study on the effects of negative information on childhood fear', Behaviour Research and Therapy, vol. 41, no. 2, pp. 195-208.
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The current study examined the effects of negative information on the enhancement of childhood fear. A large group of normal primary school children aged between 4 and 12 years (N=285) received either negative or positive information about an unknown, doglike animal, called 'the beast'. Children's fears were assessed at three points in time: before, directly after, and one week after the information about the beast was provided (i.e., pre-, post- and follow-up assessment). Results showed that type of information changed children's fear of the beast in the predicted direction with negative information increasing fear levels and positive information decreasing fear levels. This was not only the case directly after the experimental manipulation but also at one week follow-up. Furthermore, fear of the beast appeared to generalize, that is, children who became more fearful of the beast after receiving negative information, also became more apprehensive of other dogs and predators. © 2003 Elsevier Science Ltd. All rights reserved.
Murray, B 2003, 'Reproductive characteristics of Road-verge and Reserve-interior populations of Exocarpos cupressiformis Labill (Santalaceae)', The Victorian Naturalist, vol. 120, no. 1, pp. 10-14.
Murray, BBR, Zeppel, MJB, Hose, GC & Eamus, D 2003, 'Groundwater-dependent ecosystems in Australia: It's more than just water for rivers', Ecological Management and Restoration, vol. 4, no. 2, pp. 110-113.
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Murray, BR & Leishman, MR 2003, 'On the relationship between seed mass and species abundance in plant communities', OIKOS, vol. 101, no. 3, pp. 643-645.
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Murray, BR, Brown, AHD & Grace, JP 2003, 'Geographic gradients in seed size among and within perennial Australian Glycine species', AUSTRALIAN JOURNAL OF BOTANY, vol. 51, no. 1, pp. 47-56.
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Nieuwenburg, P, Clarke, RJ, Cai, ZL, Chen, M, Larkum, AWD, Cabral, NM, Ghiggino, KP & Reimers, JR 2003, 'Examination of the photophysical processes of chlorophyll d leading to a clarification of proposed uphill energy transfer processes in cells of Acaryochloris marina', PHOTOCHEMISTRY AND PHOTOBIOLOGY, vol. 77, no. 6, pp. 628-637.
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Nouwens, AS, Beatson, SA, Whitchurch, CB, Walsh, BJ, Schweizer, HP, Mattick, JS & Cordwell, SJ 2003, 'Proteome analysis of extracellular proteins regulated by the las and rhl quorum sensing systems in Pseudomonas aeruginosa PAO1', MICROBIOLOGY-SGM, vol. 149, pp. 1311-1322.
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The las and rhl quorum sensing (QS) systems regulate the expression of several genes in response to cell density changes in Pseudomonas aeruginosa. Many of these genes encode surface-associated or secreted virulence factors. Proteins from stationary phas
Novikov, A 2003, 'Martingales and first-exit times for the Ornstein-Uhlenbeck process with jumps', Theory of Probability and its Applications, vol. 48, no. 2, pp. 340-358.
Novikov, A, Frishling, V & Kordzakhia, N 2003, 'Time-Dependent Barrier Options and Boundary Crossing Probabilities', gmj, vol. 10, no. 2, pp. 325-334.
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Abstract
The problem of pricing of time-dependent barrier options is considered in the case when interest rate and volatility are given functions in Black–Scholes framework. The calculation of the fair price reduces to the calculation of non-linear boundary crossing probabilities for a standard Brownian motion. The proposed method is based on a piecewise-linear approximation for the boundary and repeated integration. The numerical example provided draws attention to the performance of suggested method in comparison to some alternatives.
Nurtjahja-Tjendraputra, E, Ammit, AJ, Roufogalis, BD, Tran, VH & Duke, CC 2003, 'Effective anti-platelet and COX-1 enzyme inhibitors from pungent constituents of ginger', Thrombosis Research, vol. 111, no. 4-5, pp. 259-265.
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Och, DJ, Leitch, EC, Caprarelli, G & Watanabe, T 2003, 'Blueschist and eclogite in tectonic melange, Port Macquarie, New South Wales, Australia', MINERALOGICAL MAGAZINE, vol. 67, no. 4, pp. 609-624.
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The Rocky Beach Metamorphic Melange contains metre-scale phacoids of high-P low-T metamorphic rocks embedded in chlorite-actinolite schist. The phacoids include eclogite, glaucophane schist and omphacitite and provide evidence for four episodes of metamorphism with mineral assemblages: M1 = actinolite-glaucophane-titanite-apatite, M2 = almandine-omphacite-lawsonite ± quartz, M3 = phengiteglaucophane-K-feldspar-quartz, and M4 = chlorite-actinolite-calcite-quartz-titanite-white mica ± albite ± talc. M1-M3 occurred at a Neoproterozoic-Early Palaeozoic convergent plate boundary close to the eastern margin of Gondwana. Peak metamorphic conditions were attained during the static phase M2, with temperatures of ~560ºC and pressures in excess of 1.8 GPa, equivalent to a depth of burial of at least 54 km.
Ogura, Y, Ogasawara, N, Harry, EJ & Moriya, S 2003, 'Increasing the Ratio of Soj to Spo0J Promotes Replication Initiation in Bacillus subtilis', Journal of Bacteriology, vol. 185, no. 21, pp. 6316-6324.
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ABSTRACT
The ParA and ParB protein families are well conserved in bacteria. However, their functions are still unclear. In
Bacillus subtilis
, Soj and Spo0J are members of these two protein families, respectively. A previous report revealed that replication initiated early and asynchronously in
spo0J
null mutant cells, as determined by flow cytometry. In this study, we examined the cause of this promotion of replication initiation. Deletion of both the
soj
and
spo0J
genes restored the frequency of replication initiation to almost the wild-type level, suggesting that production of Soj in the absence of Spo0J leads to early and asynchronous initiation of replication. Consistent with this suggestion, overproduction of Soj in wild-type cells had the same effect on replication initiation as in the
spo0J
null mutant, and overproduction of both Soj and Spo0J did not. These results indicate that when the ratio of Soj to Spo0J increases, Soj interferes with tight control of replication initiation and causes early and asynchronous initiation. Whereas replication initiation also occurred significantly earlier in the two
spo0J
mutants,
spo0J14
and
spo0J17
, it occurred only slightly early in the
sojK16Q
mutant and was delayed in the
sojG12V
mutant. Although Soj localized to nucleoids in the
spo0J
mutants, the two Soj mutant proteins were distributed throughout the cell ...
Okuno, S, Ryan, LM, Edmonson, JH, Priebat, DA & Blum, RH 2003, 'Phase II trial of gemcitabine in patients with advanced sarcomas (E1797)', Cancer, vol. 97, no. 8, pp. 1969-1973.
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BACKGROUND. The current study was conducted to evaluate the antitumor activity 2 and toxicity of gemcitabine in patients with advanced sarcoma. METHODS. Twenty-five patients with advanced sarcomas, who previously were untreated for metastatic disease, we
Ollendick, TH, Seligman, LD, Goza, AB, Byrd, DA & Singh, K 2003, 'Anxiety and depression in children and adolescents: A factor-analytic examination of the tripartite model', Journal of Child and Family Studies, vol. 12, no. 2, pp. 157-170.
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The tripartite model of Clark and Watson (1981) suggests that the oft-observed covariation between anxiety and depression can best be understood by examining three related yet distinct constructs: negative affectivity, positive affectivity, and elevated physiological arousal. In the present study, 510 boys and girls in the 4th, 7th, and 10th grades completed the Children's Depression Inventory and the Revised Children's Manifest Anxiety Scale. Confirmatory factor analyses were conducted to determine the goodness of fit of single-factor (i.e., negative affectivity), two-factor (i.e., anxiety and depression), and three-factor models (i.e., negative affectivity, positive affectivity, and physiological arousal). Analyses were conducted by examining each of the models in the whole sample first and then separately for boys and girls and for fourth, seventh, and tenth grade youths. Results failed to support the tripartite theory; rather, the findings supported a two-factor model in all cases. These factors represented the general constructs of anxiety and depression, and these factors remained significantly interrelated. Consistent with previous findings, the strength of these relations was stronger for boys than girls and for children than adolescents.
Paulsen, IT, Banerjei, L, Myers, GSA, Nelson, KE, Seshadri, R, Read, TD, Fouts, DE, Eisen, JA, Gill, SR, Heidelberg, JF, Tettelin, H, Dodson, RJ, Umayam, L, Brinkac, L, Beanan, M, Daugherty, S, DeBoy, RT, Durkin, S, Kolonay, J, Madupu, R, Nelson, W, Vamathevan, J, Tran, B, Upton, J, Hansen, T, Shetty, J, Khouri, H, Utterback, T, Radune, D, Ketchum, KA, Dougherty, BA & Fraser, CM 2003, 'Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis', Science, vol. 299, no. 5615, pp. 2071-2074.
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The complete genome sequence of
Enterococcus faecalis
V583, a vancomycin-resistant clinical isolate, revealed that more than a quarter of the genome consists of probable mobile or foreign DNA. One of the predicted mobile elements is a previously unknown
vanB
vancomycin-resistance conjugative transposon. Three plasmids were identified, including two pheromone-sensing conjugative plasmids, one encoding a previously undescribed pheromone inhibitor. The apparent propensity for the incorporation of mobile elements probably contributed to the rapid acquisition and dissemination of drug resistance in the enterococci.
Phillips, MR, Telg, H, Kucheyev, SO, Gelhausen, O & Toth, M 2003, 'Cathodoluminescence efficiency dependence on excitation density in n-type gallium nitride', MICROSCOPY AND MICROANALYSIS, vol. 9, no. 2, pp. 144-151.
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Cathodoluminescence (CL) spectra from silicon doped and undoped wurtzite n-type GaN have been measured in a SEM under a wide range of electron beam excitation conditions, which include accelerating voltage, beam current, magnification, beam diameter, and specimen temperature. The CL intensity dependence on excitation density was analyzed using a power-law model (ICL [is proportional to] Jm) for each of the observed CL bands in this material. The yellow luminescence band present in both silicon and undoped GaN exhibits a close to cube root (m = 0.33) dependence on electron beam excitation at both 77 K and 300 K. However, the blue (at 300 K) and donor-acceptor pair (at 77 K) emission peaks observed in undoped GaN follow power laws with exponents of m = 1 and m = 0.5, respectively. As expected from its excitonic character, the near band edge emission intensity depends linearly (m = 1) in silicon doped GaN and superlinearly (m = 1.2) in undoped GaN on the electron beam current. Results show that the intensities of the CL bands are highly dependent not only on the defect concentration but also on the electron-hole pair density and injection rate. Furthermore, the size of the focussed electron beam was found to have a considerable effect on the relative intensities of the CL emission peaks. Hence SEM parameters such as the objective lens aperture size, astigmatism, and the condenser lens setting must also be considered when assessing CL data based on intensity measurements from this material.
Platen, E 2003, 'An Alternative Interest Rate Term Structure Model', International Journal of Theoretical & Applied Finance, vol. 8, no. 6, pp. 717-735.
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This paper proposes analternative approach to the modeling of the interest rate term structure. It suggests that the total market price for risk is an important factor that has to be modeled
carefully. The growth optimal portfolio, which is characterized by this factor, is used as refernce unit or benchmark for obtaining a consistent price system. Benchmarked derivative prices are taken as
conditional expectations of future benchmarked prices under the real world probability measure. The inverse of the squared total market price for risk is modeled as a square root process and
shown to influence the medium and long term forward rates. With constant parameters and constant short rate the model already generates a hump shaped mean of the forward rate curve and other empirical
features typically observed.
Platen, E & Stahl, G 2003, 'A structure for general and specific market risk', COMPUTATIONAL STATISTICS, vol. 18, no. 3, pp. 355-373.
Powell, CE, Cifuentes, MP, McDonagh, AM, Hurst, SK, Lucas, NT, Delfs, CD, Stranger, R, Humphrey, MG, Houbrechts, S, Asselberghs, I, Persoons, A & Hockless, DCR 2003, 'Organometallic complexes for nonlinear optics.', Inorganica Chimica Acta, vol. 352, no. 6, pp. 9-18.
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The syntheses of the alkynyl complexes M(4-C6-point triple bond; length half of m-dashCC6H4NO2)(dppe)(?-C5H5) [M=Fe (1), Ru (2), Os (3)], Os(4-C6-point triple bond; length half of m-dashCC6H4NO2)(PPh3)2(?-C5H5) (4) and Ru(4-C6-point triple bond; length half of m-dashCC6H4NO2)(CO)2(?-C5H5) (5) are reported. Structural studies reveal a decrease in Ru---C(1) distance on proceeding from 5 to 2, consistent with greater back-donation of electron density to the alkynyl ligand from the more electron-rich metal center in 2. Electrochemical data show that the MII/III couple for the dicarbonyl complex 5 is at a significantly more positive potential than that of the related diphosphine complex 2, consistent with ligand variation modifying the electron richness and hence donor strength of the metal center. Time-dependent density functional calculations on model complexes M(4-C6-point triple bond; length half of m-dashCC6H4NO2)(PH3)2(?-C5H5) (M=Fe, Ru, Os) have been employed to assign the intense low-energy optical transition in these complexes as MLCT in character, the higher energy band being phenylphenyl* in nature. Molecular quadratic optical nonlinearities have been measured using the hyper-Rayleigh scattering procedure at 1064 nm. ? values vary as Fe?Ru?Os for metal variation and CO
Pringle, RM, Webb, JK & Shine, R 2003, 'Canopy structure, microclimate, and habitat selection by a nocturnal snake, Hoplocephalus bungaroides', ECOLOGY, vol. 84, no. 10, pp. 2668-2679.
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Forest structure strongly influences ambient environmental conditions such as light and temperature, but most studies on habitat selection by mobile organisms have either ignored canopy structure or treated it as a dichotomous variable (e.g., "shady" or "sunny"). Furthermore, the predominance of active diurnal species as model organisms in such studies has left many unanswered questions about the importance of vegetation-related variables for nocturnal and sedentary species (e.g., what does "shade" mean to an organism that moves at night and sits in a cave all day?). We used hemispherical photography to quantify canopy structure and examine its role in determining the thermal microenvironments available to a rock-dwelling nocturnal snake (Hoplocephalus bungaroides) across two different spatial scales. The narrow plateaus inhabited by the snakes in southeastern Australia are highly heterogeneous with respect to vegetation: east-facing aspects are densely covered whereas west-facing aspects are patchy mosaics. We found that temperatures of potential retreat sites increased with increasing canopy openness, but the definitive determinant of retreat-site temperature was incident radiation intensity, which depended upon the location of canopy gaps relative to the sun path. This factor restricted the snakes to west-facing cliff tops, and there only to an optimal subset of rocks that received adequate irradiance. Moreover, thermal regimes of retreat sites displayed higher maxima and were evening shifted relative to randomly sampled rocks in the same area. Our results suggest that thermally suitable retreat sites are a limiting resource, and that local increases in vegetation density might contribute to the decline of this endangered species.
Prins, PJM 2003, 'Cognitive change and enhanced coping: Missing mediational links in cognitive behavior therapy with anxiety-disordered children', Clinical Child and Family Psychology Review, vol. 6, no. 2, pp. 87-105.
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In this review, we examine the recent cognitive behavior therapy (CBT) outcome literature with anxiety-disordered children and, specifically, explore the status of cognitive change and increased coping ability as (1) specific treatment effects, and (2) possible mediators of the efficacy of CBT. In the past decade, the number of controlled CBT studies with clinically diagnosed anxiety-disordered children has increased substantially. CBT arms to restructure distorted or maladaptive cognitions and teach the anxious child to effectively use diverse coping strategies. Our review shows that in recent CBT research with anxiety-disordered children the use of domain-specific measures like cognitive and coping measures is, unfortunately, not common practice. Furthermore, only one study examined the issue of treatment mediation. Generally, recent CBT research has not been designed to test mediational issues and does not clarify whether cognitive change and enhanced coping - the presumed central components of CBT - are in fact responsible for its efficacy. Implications for the direction of future CBT research with anxiety-disordered children are discussed.
Pritchard, TR, Lee, RS, Ajani, PA, Rendell, PS, Black, K & Koop, K 2003, 'Phytoplankton responses to nutrient sources in coastal waters off southeastern Australia', Aquatic Ecosystem Health & Management, vol. 6, no. 2, pp. 105-117.
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Reports of visible algal blooms have increased in New South Wales (NSW) coastal waters since 1990. Our three-year, multi-disciplinary study assessed the relative importance of natural and anthropogenic nutrients on the development of phytoplankton blooms in the waters between Port Stephens and Jervis Bay. The hinterland of this region accommodates 85% of the population of the 6.5 million inhabitants of New South Wales, Australia. Three deepwater outfalls represented the principal, continuous, anthropogenic nutrient source with nitrogen mainly in the bioavailable form of ammonia. Sewage effluent typically remained submerged especially during the spring-summer period when algal blooms occur most frequently. On average, coastal catchments contributed relatively small loads of nutrients except during major flood events because extensive estuaries tend to buffer nutrient fluxes to the ocean. Episodic slope water intrusions were the principal source of nitrogen (nitrate) to coastal waters especially during spring and summer. Phytoplankton blooms appeared to occur in response to slope water intrusions irrespective of proximity to other major nutrient sources. A new understanding of mechanisms of slope water intrusion emerged from model simulations and direct observations. A major upwelling event in January 1998, towards the end of the 1997/98 El Niño period, demonstrated the importance of large scale slope water intrusions on the development of algal blooms. Although natural upwelling/uplifting was found to be the principal driver for major algal blooms, it is possible that more subtle impacts of anthropogenic nutrients may be masked by ‘natural’ variability including that due to the El Niño Southern Oscillation.
Purkerson, DG, Doblin, MA, Bollens, SM, Luoma, SN & Cutter, GA 2003, 'Selenium in San Francisco Bay zooplankton: Potential effects of hydrodynamics and food web interactions', ESTUARIES, vol. 26, no. 4A, pp. 956-969.
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The potential toxicity of elevated selenium (Se) concentrations in aquatic ecosystems has stimulated efforts to measure Se concentrations in benthos, nekton, and waterfowl in San Francisco Bay (SF Bay). In September 1998, we initiated a 14 mo field study to determine the concentration of Se in SF Bay zooplankton, which play a major role in the Bay food web, but which have not previously been studied with respect to Se. Monthly vertical plankton tows were collected at several stations throughout SF Bay, and zooplankton were separated into two operationally defined size classes for Se analyses: 73-2,000 mum, and greater than or equal to2,000 mum. Selenium values ranged 1.02-6.07 mug Se g(-1) dry weight. No spatial differences in zooplankton Se concentrations were found. However, there were inter- and intra-annual differences. Zooplankton Se concentrations were enriched in the North Bay in Fall 1999 when compared to other seasons and locations within and outside SF Bay. The abundance and biovolume of the zooplankton community varied spatially between stations, but not seasonally within each station. Smaller herbivorous-omnivorous zooplankton had higher Se concentrations than larger omnivorous-carnivorous zooplankton. Selenium concentrations in zooplankton were negatively correlated with the proportion of total copepod biovolume comprising the large carnivorous copepod Tortanus dextrilobatus, but positively correlated with the proportion of copepod biovolume comprising smaller copepods of the family Oithonidae, suggesting an important role of trophic level and size in regulating zooplankton Se concentrations.
Qu, X, Dang, L & Paul Seale, J 2003, 'Inhibitory Effect of Hypocrellin A on Protein Kinase C in Liver and Skeletal Muscle of Obese Zucker Rats', The American Journal of Chinese Medicine, vol. 31, no. 06, pp. 871-878.
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In this ex vivo study, the inhibitory activity of hypocrellin A (HA), a perylene quinonoid pigment isolated from the Chinese medicinal fungus Hypocrella bambuase, on protein kinase C (PKC) enzyme activity in insulin target tissues of obese Zucker rats was assessed. Pre-incubation with HA for 30 minutes significantly inhibited the activity of partially purified PKC enzyme from liver and soleus skeletal muscle in a dose-dependent manner ( IC 50=0.07 and 0.26 μg/ml, respectively). HA produced a greater inhibitory effect in enzyme prepared from the liver than enzyme prepared from soleus muscle. Since total PKC activity in these two insulin target tissues is the net result of several different isoforms of PKC, and PKC-θ is a major isoform expressed in the soleus skeletal muscle, the present data suggest that the naturally occurring compound, HA, may selectively inhibit certain PKC isoforms other than PKC-θ. Further investigations are required to determine which PKC isoforms are most susceptible to HA and whether changes in PKC signaling during treatment with HA can reverse abnormalities of glucose and lipid metabolism in insulin resistant and diabetic states.
Ramachandran, V, Brett, K, Hornitzky, MA, Dowton, M, Bettelheim, KA, Walker, MJ & Djordjevic, SP 2003, 'Distribution of Intimin Subtypes among Escherichia coli Isolates from Ruminant and Human Sources', Journal of Clinical Microbiology, vol. 41, no. 11, pp. 5022-5032.
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ABSTRACT
The intimin gene
eae
, located within the locus of enterocyte effacement pathogenicity island, distinguishes enteropathogenic
Escherichia coli
(EPEC) and some Shiga toxin-producing
E. coli
(STEC) strains from all other pathotypes of diarrheagenic
E. coli
. EPEC is a leading cause of infantile diarrhea in developing countries, and intimin-positive STEC isolates are typically associated with life-threatening diseases such as hemolytic-uremic syndrome and hemorrhagic colitis. Here we describe the development of a PCR-restriction fragment length polymorphism (RFLP) assay that reliably differentiates all 11 known intimin types (α1, α2, β, γ, κ, ε, η, ι, λ, θ, and ζ) and three new intimin genes that show less than 95% nucleotide sequence identity with existing intimin types. We designated these new intimin genes Int-μ, Int-ν, and Int-ξ. The PCR-RFLP assay was used to screen 213
eae
-positive
E. coli
isolates derived from ovine, bovine, and human sources comprising 60 serotypes. Of these, 82 were STEC isolates, 89 were
stx
-negative (
stx
−
) and
ehxA
-positive (
ehxA
+
) isolates, and 42 were
stx
−
and
ehxA
-negative isolates. Int-β, the most commonly identified
eae
...
Read, TD 2003, 'Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae', Nucleic Acids Research, vol. 31, no. 8, pp. 2134-2147.
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Reimers, JR & Hush, NS 2003, 'Modeling the bacterial photosynthetic reaction center. VII. Full simulation of the intervalence hole-transfer absorption spectrum of the special-pair radical cation', JOURNAL OF CHEMICAL PHYSICS, vol. 119, no. 6, pp. 3262-3277.
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Reimers, JR, Cai, ZL, Bilic, A & Hush, NS 2003, 'The appropriateness of density-functional theory for the calculation of molecular electronics properties', MOLECULAR ELECTRONICS III, vol. 1006, pp. 235-251.
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Reimers, JR, Shapley, WA & Hush, NS 2003, 'Modelling the bacterial photosynthetic reaction center. V. Assignment of the electronic transition observed at 2200 cm(-1) in the special-pair radical-cation as a second-highest occupied molecular orbital to highest occupied molecular orbital transition', JOURNAL OF CHEMICAL PHYSICS, vol. 119, no. 6, pp. 3240-3248.
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Reimers, JR, Shapley, WA, Rendell, AP & Hush, NS 2003, 'Modelling the bacterial photosynthetic reaction center. VI. Use of density-functional theory to determine the nature of the vibronic coupling between the four lowest-energy electronic states of the special-pair radical cation', JOURNAL OF CHEMICAL PHYSICS, vol. 119, no. 6, pp. 3249-3261.
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Ritchie, AJ, Yam, AOW, Tanabe, KM, Rice, SA & Cooley, MA 2003, 'Modification of In Vivo and In Vitro T- and B-Cell-Mediated Immune Responses by the Pseudomonas aeruginosa Quorum-Sensing Molecule N -(3-Oxododecanoyl)- l -Homoserine Lactone', Infection and Immunity, vol. 71, no. 8, pp. 4421-4431.
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ABSTRACT
N
-3-(oxododecanoyl)-
l
-homoserine lactone (OdDHL), a quorum-sensing molecule of
Pseudomonas aeruginosa
, plays an important role in the pathogenesis of the organism through its control of virulence factor expression. Several reports have suggested that OdDHL can also directly modulate host immune responses. However, the nature of the modulation is controversial, with different reports suggesting promotion of either humoral (Th2-mediated) or inflammatory (Th1-mediated) responses. This report describes a series of studies which demonstrate for the first time that in vivo administration of OdDHL can modulate the course of an antibody response, with an increase in ovalbumin (OVA)-specific immunogloblulin G1 (IgG1) but not IgG2a in OdDHL-treated OVA-immunized BALB/c mice compared to levels for controls. In vitro stimulation of lymphocytes from both Th1-biased C57Bl/6 and T-cell receptor transgenic mice and Th2-biased BALB/c mice in the presence of OdDHL demonstrated that OdDHL inhibits in vitro cytokine production in response to both mitogen and antigen, with gamma interferon (IFN-γ) tending to be more inhibited than interleukin-4 (IL-4). In vitro mitogen or antigen restimulation of cells from mice treated with OdDHL in vivo shows effects on cytokine production which depend on the underlying immune bias of the mouse strain used, with a relative increase of IFN-γ in Th1-biased C57Bl/6 mice and a relative increase of IL-4 in Th2-biased BALB/c mice. Thus, the mode of action of OdDHL on T-cell cytokine production is likely to be a relatively nonspecific one which accentuates an underlying immune response bias rather than one which specifically targets either Th1 or Th2 responses.
Ritchie, AJ, Yam, AOW, Tanabe, KM, Rice, SA & Cooley, MA 2003, 'Modification of in vivo and in vitro T- and B-cell-mediated immune responses by the Pseudomonas aeruginosa quorum-sensing molecule N-(3-oxododecanoyl)-L-homoserine lactone', INFECTION AND IMMUNITY, vol. 71, no. 8, pp. 4421-4431.
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ROCHE, N, STIRLING, RG, LIM, S, OLIVER, BG & CHUNG, KF 2003, 'Regulation of protease-activated receptor-1 in mononuclear cells by neutrophil proteases', Respiratory Medicine, vol. 97, no. 3, pp. 228-233.
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Roche, N, Stirling, RG, Lim, S, Oliver, BG, Oates, T, Jazrawi, E, Caramori, G & Chung, KF 2003, 'Effect of acute and chronic inflammatory stimuli on expression of protease-activated receptors 1 and 2 in alveolar macrophages', Journal of Allergy and Clinical Immunology, vol. 111, no. 2, pp. 367-373.
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Rodgers, KJ & Dean, RT 2003, 'Assessment of proteasome activity in cell lysates and tissue homogenates using peptide substrates', INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY, vol. 35, no. 5, pp. 716-727.
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The ubiquitin-proteasome pathway is a major route of degradation of cell proteins. It also plays an essential role in maintaining cell homeostasis by degrading many rate-limiting enzymes and critical regulatory proteins. Alterations in proteasome activit
Ronnenberg, AG, Wang, XB, Xing, HX, Chen, CZ, Chen, DF, Guang, WW, Guang, AQ, Wang, LH, Ryan, L & Xu, XP 2003, 'Low preconception body mass index is associated with birth outcome in a prospective cohort of Chinese women', JOURNAL OF NUTRITION, vol. 133, no. 11, pp. 3449-3455.
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Low maternal prepregnancy BMI is associated with adverse birth outcomes, but the BMI at which risk increases is not well defined. We assessed whether the relationship between prepregnancy BMI and birth outcomes is influenced by the extent to which mothers were underweight in a prospective study in Anhui, China. The women (n = 575) were 20-34 y old, married, nulliparous and nonsmokers. All measures of infant growth increased with increasing maternal BMI until a plateau was reached at a BMI of 22-23 kg/m(2). Infants born to the 27% of women who were severely underweight before pregnancy (BMI less than or equal to 18.5 kg/m(2)) were at increased risk for fetal growth deficits associated with infant morbidity. Compared with a normal BMI, being severely underweight was associated with mean (+/- SEM) reductions of 219 +/- 40 g in infant birthweight and 6.7 +/- 1.3% in the birthweight ratio and an 80% increase in risk of intrauterine growth restriction [odds ratio (OR) 1.8; 95% Cl: 1.0, 3.3; P = 0.05]. Being severely underweight was also associated with smaller infant head circumference and lower ponderal index. Being moderately underweight (18.5 < BMI < 19.8 kg/m(2)) was not significantly associated with adverse pregnancy outcomes. Gestational age and risk of preterm birth were not associated with maternal BMI. More than half of the women in this study were underweight before pregnancy. Although being moderately underweight was not associated with increased risk of adverse pregnancy outcomes, being severely underweight was an important risk factor for reduced fetal growth.
Roy, J, Lin, XH & Ryan, LM 2003, 'Scaled marginal models for multiple continuous outcomes', BIOSTATISTICS, vol. 4, no. 3, pp. 371-383.
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In studies that involve multivariate outcomes it is often of interest to test for a common exposure effect. For example, our research is motivated by a study of neurocognitive performance in a cohort of HIV-infected women. The goal is to determine whethe
Runcie, JW, Ritchie, RJ & Larkum, AWD 2003, 'Uptake kinetics and assimilation of inorganic nitrogen by Catenella nipae and Ulva lactuca', Aquatic Botany, vol. 76, no. 2, pp. 155-174.
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The kinetics of NH4+, the assimilation of NH4+ and nitrate uptake by Catenella nipae (Rhodophyta) were compared with Ulva lactuca (Chlorophyta). Both algal species demonstrated saturable NH4+ and nitrate uptake kinetics. Uptake of NH3 by simple diffusion across the plasmalemma could not account for the observed saturation uptake kinetics of ammonia-N (NH3 + NH4+), so NH4+ was the chemical form being taken up by the transport systems of the cells. Although the Vmax of NH4+ uptake by C. nipae and U. lactuca was high (≈550 and 450 μmol g-1 DW h-1, respectively), the Km for U. lactuca (≈85 μM) was much lower than that for C. nipae (≈692 μM). The Km and Vmax values for nitrate uptake were much lower than for NH4+ for both C. nipae (Km ≈ 5 μM; Vmax ≈ 8.3 μmol g-1 DW h-1) and U. lactuca (Km ≈ 34 μM; Vmax ≈ 116 -mol g-1 DW h-1). Over the incubation times used (up to 28 min) there was no apparent induction of nitrate transport in either species. There was no evidence for induction of NH4+ transport in C. nipae but incubation time did affect the kinetics of NH4+ uptake in U. lactuca. At high concentrations of NH4+, U. lactuca rapidly assimilated it into organic N with limited build-up of intracellular NH4+ whereas C. nipae accumulated large amounts of NH4+ because uptake of NH4+ overtook the rate of assimilation. The effects of species-specific differences and experimental design on uptake-kinetic estimates are discussed in the light of the results of this other comparable studies. C. nipae is promising as a bioindicator species of the N-status of estuaries but U. lactuca changes its N-status too quickly for it to be a useful bioindicator of environmental conditions. © 2003 Elsevier Science B.V. All rights reserved.
Sader, MA, McGrath, KCY, Handelsman, DJ, Celermajer, DS & Death, AK 2003, 'Leukocyte androgen receptor expression in mice and men; Gender and hormonal regulation, and implications for atherosclerosis', Heart, Lung and Circulation, vol. 12, no. 2, pp. A39-A40.
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Santos, DM, Rijo, J, Jacobs, M, Dennis, ES & Dolferus, R 2003, 'Approaches for the isolation of Arabidopsis adh1 regulatory mutants using allyl alcohol selection', RUSSIAN JOURNAL OF PLANT PHYSIOLOGY, vol. 50, no. 6, pp. 762-773.
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Sashin, VA, Bolorizadeh, MA, Kheifets, AS & Ford, MJ 2003, 'Electronic band structure of beryllium oxide', JOURNAL OF PHYSICS-CONDENSED MATTER, vol. 15, no. 21, pp. 3567-3581.
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The energymomentum resolved valence band structure of beryllium oxide has been measured by electron momentum spectroscopy (EMS). Band dispersions, bandwidths and intervalence bandgap, electron momentum density (EMD) and density of occupied states have been extracted from the EMS data. The experimental results are compared with band structure calculations performed within the full potential linear muffin-tin orbital approximation. Our experimental bandwidths of 2.1 ± 0.2 and 4.8 ± 0.3 eV for the oxygen s and p bands, respectively, are in accord with theoretical predictions, as is the s-band EMD after background subtraction. Contrary to the calculations, however, the measured p-band EMD shows large intensity at the ? point. The measured full valence bandwidth of 19.4 ± 0.3 eV is at least 1.4 eV larger than the theory. The experiment also finds a significantly higher value for the p-to-s-band EMD ratio in a broad momentum range compared to the theory.
Saunders, BM, Fernando, SL, Sluyter, R, Britton, WJ & Wiley, JS 2003, 'A Loss-of-Function Polymorphism in the Human P2X7 Receptor Abolishes ATP-Mediated Killing of Mycobacteria', The Journal of Immunology, vol. 171, no. 10, pp. 5442-5446.
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Abstract
Protective immunity to mycobacterial infections requires activation of the antibacterial mechanisms of infected macrophages. It has previously been reported that ATP treatment of mycobacteria-infected macrophages induces apoptosis mediated via the P2X7 pathway and that this leads to the death of both the host cell and the internalized bacilli. We have recently identified a single nucleotide polymorphism in the P2X7 gene (1513A→C), with 1–2% prevalence in the homozygous state, which codes for a nonfunctional receptor. IFN-γ-primed, mycobacteria-infected macrophages from wild-type individuals were incubated with ATP and this induced apoptosis and reduced mycobacterial viability by 90%. Similar treatment of macrophages from individuals homozygous for the 1513C polymorphism failed to induce apoptosis and did not lead to mycobacterial killing via the P2X7-mediated pathway. These data demonstrate that a single nucleotide polymorphism in the P2X7 gene can allow survival of mycobacteria within infected host cells.
Scarpa, A & Ollendick, TH 2003, 'Community violence exposure in a young adult sample: III. Psychophysiology and victimization interact to affect risk for aggression', Journal of Community Psychology, vol. 31, no. 4, pp. 321-338.
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An initial study of young adults with high and low exposure to community violence found that aggression was related to increased baseline heart rate variability (HRV), reduced baseline heart rate (HR), and increased poststressor cortisol level. Based upon previous research on biosocial interactions, this study tested specific predictions that the cardiovascular-aggression link would be found only in nonvictims and the cortisol-aggression link only in victims. Forty-seven victims and nonvictims completed self-reports of aggression and two Stressor tasks. Results supported the hypotheses for HRV and cortisol. However, reduced HR was associated with aggression in both victims and nonvictims, and its variance was explained by increased HRV. Findings support biosocial theories of violence and are discussed in terms of vagally mediated HR underarousal and emotion dysregulation in antisocial populations. © 2003 Wiley Periodicals, Inc.
Schatzkin, A, Kipnis, V, Carroll, RJ, Midthune, D, Subar, AF, Bingham, S, Schoeller, DA, Troiano, RP & Freedman, LS 2003, 'A comparison of a food frequency questionnaire with a 24-hour recall for use in an epidemiological cohort study: results from the biomarker-based Observing Protein and Energy Nutrition (OPEN) study', International Journal of Epidemiology, vol. 32, no. 6, pp. 1054-1062.
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Schelm, S & Smith, GB 2003, 'Dilute LaB6 nanoparticles in polymer as optimized clear solar control glazing', APPLIED PHYSICS LETTERS, vol. 82, no. 24, pp. 4346-4348.
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Window samples with a LaB6 nanoparticle-doped polymer laminate were tested for their performances in the reduction of solar heat gain. The near-infrared absorption, caused by the excitation of surface plasmons, was modeled using an average ellipsoid approach, including a size-induced broadening of the Drude part of the dielectric function. The resonance positions are well reproduced by this method and the size effect broadens the bulk resonance to an extent observed in the sample spectra. Additional broadening and spectral features observed in the absorption of the samples are attributed to shape and orientation effects.
Shao, Y, Yang, Y, Wang, J, Song, Z, Leslie, LM, Dong, C, Zhang, Z, Lin, Z, Kanai, Y, Yabuki, S & Chun, Y 2003, 'Northeast Asian dust storms: Real‐time numerical prediction and validation', Journal of Geophysical Research: Atmospheres, vol. 108, no. D22.
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Shapter, J, Hale, PS, Maddox, LM, Ford, M & Waclawik, ER 2003, 'Teaching undergraduate nanotechnology', World Transactions on Engineering and Technology Education, vol. 2, no. 2, pp. 299-302.
Shields, AJ, Stevenson, RM, Thompson, RM, Ward, MB, Yuan, Z, Kardynal, BE, See, P, Farrer, I, Lobo, C, Cooper, K & Ritchie, DA 2003, 'Self-assembled quantum dots as a source of single photons and photon pairs', physica status solidi (b), vol. 238, no. 2, pp. 353-359.
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Shinozaki, K & Dennis, ES 2003, 'Cell signalling and gene regulation - Global analyses of signal transduction and gene expression profiles - Editorial overview', CURRENT OPINION IN PLANT BIOLOGY, vol. 6, no. 5, pp. 405-409.
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Simpson, AM, Elgundi, Z, Tao, CZ, Swan, MA & Winch, D 2003, 'Insulin Trafficking In A Glucose-responsive Human Liver Cell Line-huh7-egfpins', Journal Of Gene Medicine, vol. 5, no. 5, pp. 1-1.
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NA
Siverajah, S, Ryce, C, Morrison, DA & Ellis, JT 2003, 'Characterization of an alpha tubulin gene sequence from Neospora caninum and Hammondia heydorni, and their comparison to homologous genes from Apicomplexa', PARASITOLOGY, vol. 126, pp. 561-569.
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Smith, GB, Gentle, A, Swift, P, Earp, A & Mronga, N 2003, 'Coloured paints based on coated flakes of metal as the pigment, for enhanced solar reflectance and cooler interiors: description and theory', SOLAR ENERGY MATERIALS AND SOLAR CELLS, vol. 79, no. 2, pp. 163-177.
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Smith, GB, Gentle, A, Swift, PD, Earp, A & Mronga, N 2003, 'Coloured paints based on iron oxide and silicon oxide coated flakes of aluminium as the pigment, for energy efficient paint: optical and thermal experiments', SOLAR ENERGY MATERIALS AND SOLAR CELLS, vol. 79, no. 2, pp. 179-197.
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Smith, GB, Jonsson, JC & Franklin, J 2003, 'Spectral and global diffuse properties of high-performance translucent polymer sheets for energy efficient lighting and skylights', APPLIED OPTICS, vol. 42, no. 19, pp. 3981-3991.
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A visible and near-IR spectral study is presented for a translucent smooth polymer sheet in which dopant particles are clear polymer with a refractive index close to that of the clear polymer host. Diffuse, specular, and total reflectance and transmittance and absorptance as a function of sheet thickness and dopant levels approach ideal behavior for lighting applications. A fourth optical parameter, side loss ST, is introduced to fully account for the measured data. This covers radiation that is trapped by total internal reflection (TIR) and travels sideways sufficiently far, including to the sheets edges, to miss detection on exit. ST has a strong spectral character, whereas total T and R spectra closely follow the spectrally flat wavelength dependence of the undoped clear sheet. Three distinct regimes are identified for the behavior with wavelength of the specular and diffuse components and are linked to rear surface TIR and side loss
Smith, GH, Botten, LC, McPhedran, RC & Nicorovici, NA 2003, 'Cylinder gratings in conical incidence with applications to woodpile structures', PHYSICAL REVIEW E, vol. 67, no. 5, pp. 1-10.
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We use our previous formulation for cylinder gratings in conical incidence to discuss the photonic band gap properties of woodpile structures. We study scattering matrices and Bloch modes of the woodpile, and use these toinvestigate the dependence of the optical properties on the number of layers. We give data on reflectance, transmittance and absorptance of metallic woodpiles as a function of wavelength and number of layers, using both the measured optical constants of tungsten and using a perfect conductivity idealization to characterize the metal. For semi-infinite metallic woodpiles, we show that polarization of the incident field is important, highlighting the role played by surface effects as opposed to lattice effects.
Solina, DM, Cheary, RW, Swift, PD & McCredie, G 2003, 'The fabrication of stable platinum–silicon oxide multilayers for X-ray mirrors', Thin Solid Films, vol. 423, no. 1, pp. 1-12.
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An investigation has been carried out to determine the conditions required for the fabrication of stable SiO2Pt multilayers using DC-magnetron sputtering for the Pt and RF-magnetron sputtering for the SiO2. As a preliminary investigation, single layers of Pt on SiO2 were analysed by X-ray reflectivity (XRR) and X-ray photoelectron spectroscopy (XPS) to develop a model of the PtSiO2 interface layer. The results indicated that a distinct interface layer develops as a Pt silicate approximately 6 Å thick. SiO2Pt multilayers fabricated with a period d>65 Å using pure argon as the sputtering gas, display X-ray reflectivity patterns which can be accurately characterised by a repeating bilayer model. When d<65 Å the multilayer becomes unstable upon exposure to air. Additional peaks develop in the XRR pattern which increase in magnitude with time. These peaks arise from the expansion of the SiO2 layers in the multilayer starting from the top bilayer and gradually working through the multilayer. In the as-prepared specimens the SiO2 layers are incompletely oxidised and have a composition SiOx (x<2) and, on exposure to air, oxygen diffuses through the multilayer surface converting the SiOx to SiO2. By introducing a small partial pressure of oxygen into the sputtering gas during deposition, multilayers with d<65 Å remained stable on exposure to air. Under these conditions the density of the platinum layers determined from XRR measurements was reduced by approximately 25%. XPS showed that the platinum layer contained bonded oxygen in the form of platinum oxide PtOx (x<1). SiO2/PtOx multilayers have been fabricated with periods down to 13 Å, but the intensity of the first order peak drops off dramatically once the thickness of the PtOx layer is less that 1012 Å.
Speer, MS, Leslie, LM & Qi, L 2003, 'Numerical prediction of severe convection: comparison with operational forecasts', Meteorological Applications, vol. 10, no. 1, pp. 11-19.
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Stark, PC, Burge, HA, Ryan, LM, Milton, DK & Gold, DR 2003, 'Fungal levels in the home and lower respiratory tract illnesses in the first year of life', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, vol. 168, no. 2, pp. 232-237.
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The association between home dampness and lower respiratory symptoms in children has been well documented. Whether fungal exposures contribute to this association is uncertain. In a prospective birth cohort of 499 children of parents with asthma/allergies, we examined in-home fungal concentrations as predictors of lower respiratory illnesses (LRI) (croup, pneumonia, bronchitis, and bronchiolitis) in the first year. In multivariate analyses, we found a significant increased relative risk (RR) between LRI and high levels (more than the 90th percentile) of airborne Penicillium (RR = 1.73, 95% confidence interval [CI], 1.23, 2.43), dust-borne Clodosporium (RR = 1.52; Cl, 1.02, 2.25), Zygornycetes (RR = 1.96; CI, 1.35, 2.83), and Alternaria (RR = 1.51; CI, 1.00, 2.28), after controlling for sex, presence of water damage or visible mold/mildew, born in winter, breastfeeding, and being exposed to other children through siblings. In a multivariate analysis, the RR of LRI was elevated in households with any fungal level at more than the 90th percentile (RR = 1.86; CI, 1.21, 2.88). Exposure to high fungal levels increased the risk of LRI in infancy, even for infants with nonwheezing LRI. Actual mechanisms remain unknown, but fungi and their components (glucans, mycotoxins, and proteins) may increase the risk of LRI by acting as irritants or through increasing susceptibility to infection.
Stauber, A & David, D 2003, 'Allometry in the Bearded DragonPogona barbata(Sauria: Agamidae): Sex and Geographic Differences', Australian Zoologist, vol. 32, no. 2, pp. 238-245.
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Suggett, DJ, Oxborough, K, Baker, NR, MacIntyre, HL, Kana, TM & Geider, RJ 2003, 'Fast repetition rate and pulse amplitude modulation chlorophyllafluorescence measurements for assessment of photosynthetic electron transport in marine phytoplankton', European Journal of Phycology, vol. 38, no. 4, pp. 371-384.
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Pulse amplitude modulation (PAM) and fast repetition rate (FRR) fluorescence are currently used to estimate photosynthetic quantum yields and photosynthetic rates in aquatic systems. Here we compare simultaneous measurements of the photochemical efficien
Swift, PD & Smith, GB 2003, 'Color considerations in fluorescent solar concentrator stacks', APPLIED OPTICS, vol. 42, no. 25, pp. 5112-5117.
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We present modeled results of the luminous and color outputs of a three-layer stack of fluorescent planar concentrators (FPCs). FPCs have the potential to provide sufficient luminous output to illuminate moderate-sized rooms for reasonably-sized collecting areas. It is of course necessary not only that the lumens be sufficient, but also that the light be sufficiently white as to be comfortable. Modeling shows that by use of a stack of three FPCs, one each of violet, green, and red, it is possible to achieve good color rendering and sufficient lighting levels for room illumination
Swift, PD, Solina, DM, Cheary, RW & McCredie, GM 2003, 'Investigation of the interfacial structure of ultra-thin platinum film deposited by cathodic–arc', Thin Solid Films, vol. 440, no. 1-2, pp. 117-122.
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Ultra-thin films are of interest in the production of X-ray mirrors that use a multilayer structure. The most commonly used deposition techniques are dc magnetron sputtering and electron beam evaporation; this paper presents results of cathodicarc deposition. Ultra thin films of platinum with nominal thicknesses in the range 1565 Å were deposited on silicon substrates and the film structure investigated using X-ray reflectivity and X-ray photoelectron spectroscopy. It has been found that the structure of the deposited films consists of three layersthe platinum film, a silicon oxide layer and a platinum silicide layer. In contrast to dc magnetron and electron beam deposited films, the silicide layer of cathodicarc deposited films have a higher density and greater thickness, which is attributed to the higher energy process of this deposition technique. These attributes of the cathodicarc deposited films suggest that the deposition technique is not suitable for production of mirrors of materials that react with each other, but for materials that do not the deposition technique is potentially more favourable than that of e-beam and magnetron sputtering.
Tadege, M, Sheldon, CC, Helliwell, CA, Upadhyaya, NM, Dennis, ES & Peacock, WJ 2003, 'Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice', PLANT BIOTECHNOLOGY JOURNAL, vol. 1, no. 5, pp. 361-369.
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Thomas, J, Buzzini, P, Roux, C & Reedy, B 2003, 'A further look at Raman spectroscopy for the forensic examination of fibres', FORENSIC SCIENCE INTERNATIONAL, vol. 136, pp. 125-125.
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NA
Thomas, J, Roux, C, Reedy, B & Robertson, J 2003, 'Raman spectroscopy of environmentally degraded fibre samples', FORENSIC SCIENCE INTERNATIONAL, vol. 136, pp. 118-119.
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NA
Thomas, PS & Stuart, BH 2003, 'DSC characterisation of compression moulded PEEK-PTFE plaques', JOURNAL OF THERMAL ANALYSIS AND CALORIMETRY, vol. 72, no. 2, pp. 675-679.
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Compression moulded plaques of a range of poly(ether ether ketone) (PEEK)- poly(tetrafluoroethylene) (PTFE) blends (100, 92, 48, 29, 9.5 and 0 mass% PEEK) have been characterised using differential scanning calorimetry (DSC) and wide angle X-ray crystallography (WAXD). A shift in the melting peak of the PEEK phase from 347 to 358°C was observed with increasing proportion of PTFE in the blend. A narrowing of the melting range was also observed. Correspondingly, WAXD measurements showed a reduction in the d-spacings. The observed changes in morphology are rationalised in terms of a higher degree of order imparted on the PEEK crystalline phase by the transmission of an applied 'hydrostatic' pressure by the presence of the PTFE.
Thompson, LS, Webb, JS, Rice, SA & Kjelleberg, S 2003, 'The alternative sigma factor RpoN regulates the quorum sensing generhlIinPseudomonas aeruginosa', FEMS Microbiology Letters, vol. 220, no. 2, pp. 187-195.
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Ton-That, C, Shard, AG, Egger, S, Dhanak, VR & Welland, ME 2003, 'Modulations of valence-band photoemission spectrum from C60 monolayers on Ag(111)', Physical Review B - Condensed Matter and Materials Physics, vol. 67, no. 15, pp. 1554151-1554156.
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The photon-energy dependences of valence-band photoemission spectra have been investigated for monolayer, submonolayer, and multilayer C60 films on Ag(111). The intensity ratios of the highest and next-highest occupied molecular orbitals (the HOMO and NHOMO) of the films are found to oscillate with the same period as the incident photon energy is varied, but the amplitude of the oscillation is smaller with lower film coverage. Since the characteristics of the molecular orbitals of C60 in the monolayers are considerably different from those of the thick film due to the charge-transfer interaction between the metallic surface and the molecule the observation opposes the proposal in which the oscillation is entirely dependent on the nature of the empty and occupied states involved in the photoemission process. The results instead support the photoelectron interference model by Hasegawa et al. [Phys. Rev. B 58, 4927 (1998)]. Variation of the oscillation amplitude with C60 coverage is explained in terms of hybridization of the HOMO and NHOMO with the surface, Depositing C60 onto Ag(111) held at a high temperature produces a single-phase (2√3 × 2√3) R30° C60 monolayer. Angle-resolved photoemission experiments reveal changes in the relative intensities of the two bands with the azimuth-emission angle, measured with respect to the symmetry axes of the ordered monolayer. The intensity modulation is due to anisotropic scattering of photoelectrons along various molecular axes.
Ton-That, C, Shard, AG, Egger, S, Dhanak, VR & Welland, ME 2003, 'Modulations of valence-band photoemission spectrum from C-60 monolayers on Ag(111)', PHYSICAL REVIEW B, vol. 67, no. 15, pp. 1-6.
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The photon-energy dependences of valence-band photoemission spectra have been investigated for monolayer, submonolayer, and multilayer C60 films on Ag(111). The intensity ratios of the highest and next-highest occupied molecular orbitals (the HOMO and NHOMO) of the films are found to oscillate with the same period as the incident photon energy is varied, but the amplitude of the oscillation is smaller with lower film coverage. Since the characteristics of the molecular orbitals of C60 in the monolayers are considerably different from those of the thick film due to the charge-transfer interaction between the metallic surface and the molecule the observation opposes the proposal in which the oscillation is entirely dependent on the nature of the empty and occupied states involved in the photoemission process. The results instead support the photoelectron interference model by Hasegawa et al. [Phys. Rev. B 58, 4927 (1998)]. Variation of the oscillation amplitude with C60 coverage is explained in terms of hybridization of the HOMO and NHOMO with the surface. Depositing C60 onto Ag(111) held at a high temperature produces a single-phase (2sqrt[3]×2sqrt[3]) R30° C60 monolayer. Angle-resolved photoemission experiments reveal changes in the relative intensities of the two bands with the azimuth-emission angle, measured with respect to the symmetry axes of the ordered monolayer. The intensity modulation is due to anisotropic scattering of photoelectrons along various molecular axes.
Ton-That, C, Shard, AG, Egger, S, Dhanak, VR, Taninaka, A, Shinohara, H & Welland, ME 2003, 'Orientation and constraints of endohedral lanthanum in La@C-82 molecules adsorbed on Cu(111)', PHYSICAL REVIEW B, vol. 68, no. 4, pp. 1-6.
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The orientation of the endohedral La atom in La@C82 adsorbed on Cu(111) has been determined using the normal-incidence x-ray standing wave (NIXSW) technique. The NIXSW measurements were carried out using both the normal ?111? and 70.5° off-normal ?1¯11? Bragg reflections. The La ?1¯11? profiles of the La@C82 monolayer and submonolayers are found to be similar to the ?111? profile of the multilayer, while the ?111? profiles of the monolayer and submonolayers are distinctly different with much lower peak height. This indicates significant ordering of the La atoms in the monolayers with respect to height above the Cu surface but little lateral ordering. The results of curve fits to the monolayer profiles show that the La atoms are regionally located at 1.62 (±0.77) Å above an extended scattering plane from the crystal. Cooling the monolayers to a temperature of 170 K increases ordering of the La atoms with respect to height above the surface. The NIXSW results demonstrate that the endohedral molecules adopt a restricted orientation upon adsorbing on the surface and the La atom resides on either the upper or lower half of the cage. Theoretical calculations show that the most stable La positions are located in the top half of the fullerene cage, which supports the La upper configuration. The results are explained in terms of electrostatic interactions between the endohedral atom, the fullerene cage, and the substrate.
Ton-That, C, Shard, AG, Egger, S, Taninaka, A, Shinohara, H & Welland, ME 2003, 'Structural and electronic properties of ordered La@C-82 films on Si(111)', SURFACE SCIENCE, vol. 522, no. 1-3, pp. L15-L20.
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Toth, M, Thiel, BL & Donald, AM 2003, 'Interpretation of secondary electron images obtained using a low vacuum SEM', Ultramicroscopy, vol. 94, no. 2, pp. 71-87.
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Trevaskis, B, Bagnall, DJ, Ellis, MH, Peacock, WJ & Dennis, ES 2003, 'MADS box genes control vernalization-induced flowering in cereals', PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, vol. 100, no. 22, pp. 13099-13104.
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Tuch, BE, Szymanska, B, Yao, M, Tabiin, MT, Gross, DJ, Holman, S, Swan, MA, Humphrey, RKB, Marshall, GM & Simpson, AM 2003, 'Function of a genetically modified human liver cell line that stores, processes and secretes insulin', GENE THERAPY, vol. 10, no. 6, pp. 490-503.
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Turner, BJ, Cheah, IK, Macfarlane, KJ, Lopes, EC, Petratos, S, Langford, SJ & Cheema, SS 2003, 'Antisense peptide nucleic acid-mediated knockdown of the p75 neurotrophin receptor delays motor neuron disease in mutant SOD1 transgenic mice', Journal of Neurochemistry, vol. 87, no. 3, pp. 752-763.
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Upston, J & Booth, DJ 2003, 'Settlement and density of juvenile fish assemblages in natural, Zostera capricorni (Zosteraceae) and artificial seagrass beds', ENVIRONMENTAL BIOLOGY OF FISHES, vol. 66, no. 1, pp. 91-97.
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van Reyk, DM, Gillies, MC & Davies, MJ 2003, 'The retina: oxidative stress and diabetes', REDOX REPORT, vol. 8, no. 4, pp. 187-192.
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Vivian, JP, Hastings, AF, Duggin, IG, Wake, RG, Wilce, MCJ & Wilce, JA 2003, 'The impact of single cysteine residue mutations on the replication terminator protein', BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, vol. 310, no. 4, pp. 1096-1103.
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We report the structural and biophysical consequences of cysteine substitutions in the DNA-binding replication terminator protein (RTP) of Bacillus subtilis, that resulted in an optimised RTP mutant suitable for structural studies. The cysteine residue 110 was replaced with alanine, valine or serine. Protein secondary structure and stability (using circular dichroism spectropolarimetry), self-association (using analytical ultracentrifugation), and DNA-binding measurements revealed RTP.C110S to be the most similar mutant to wild-type RTP. The C110A and C110V.RTP mutants were less soluble, less stable and showed lower DNA-binding affinity. The structure of RTP.C110S, solved to 2.5AA resolution using crystallographic methods, showed no major structural perturbation due to the mutation. Heteronuclear NMR spectroscopic studies revealed subtle differences in the electronic environment about the site of mutation. The study demonstrates the suitability of serine as a substitute for cysteine in RTP and the high sensitivity of protein behaviour to single amino acid substitutions.
Walsh, CT, Pease, BC & Booth, DJ 2003, 'Sexual dimorphism and gonadal development of the Australian longfinned river eel', JOURNAL OF FISH BIOLOGY, vol. 63, no. 1, pp. 137-152.
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Wand, MP 2003, 'Smoothing and mixed models', Computational Statistics, vol. 18, no. 2, pp. 223-249.
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Wang, GX, Ahn, J-H, Yao, J, Lindsay, M, Liu, HK & Dou, SX 2003, 'Preparation and characterization of carbon nanotubes for energy storage', Journal of Power Sources, vol. 119-121, pp. 16-23.
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Wang, ZX, Liu, C & Huete, A 2003, 'From AVHRR-NDVI to MODIS-EVI: Advances in vegetation index research', Acta Ecologica Sinica, vol. 23, no. 5, pp. 979-987.
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Webb, JK, Brook, BW & Shine, R 2003, 'Does foraging mode influence life history traits? A comparative study of growth, maturation and survival of two species of sympatric snakes from south-eastern Australia', AUSTRAL ECOLOGY, vol. 28, no. 6, pp. 601-610.
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Theory predicts that compared with active searchers, ambush foragers should have lower rates of energy intake, slower growth, and higher survival rates. We tested these predictions with data on two species of sympatric, saurophagous, small-bodied, viviparous elapid snakes: the broad-headed snake, Hoplocephalus bungaroides, and the small-eyed snake, Rhinoplocephalus nigrescens. Demographic parameters and growth curves for both species were estimated from a long-term (9 years) mark-recapture study in Morton National Park, south-eastern Australia. The ambush predator (H. bungaroides) displayed slower juvenile growth and later maturation (5 years for males, 6 years for females) than did the active forager (R. nigrescens, 3 years). Litter sizes were similar in both species, but reproductive frequency was higher in R. nigrescens (90-100%) than in H. bungaroides (50%). Juvenile survival was lower in the active searcher (31%) than in the ambush forager (55%), but adult survivorship was similar (74% vs 82%). Our results support the hypothesis that ambush foragers display 'slow' life history traits, but additional phylogenetically independent comparisons are needed to evaluate the generality of this pattern.
Wei, J, Goldberg, MB, Burland, V, Venkatesan, MM, Deng, W, Fournier, G, Mayhew, GF, Plunkett, G, Rose, DJ, Darling, A, Mau, B, Perna, NT, Payne, SM, Runyen-Janecky, LJ, Zhou, S, Schwartz, DC & Blattner, FR 2003, 'Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2a Strain 2457T', Infection and Immunity, vol. 71, no. 5, pp. 2775-2786.
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ABSTRACT
We determined the complete genome sequence of
Shigella flexneri
serotype 2a strain 2457T (4,599,354 bp).
Shigella
species cause >1 million deaths per year from dysentery and diarrhea and have a lifestyle that is markedly different from those of closely related bacteria, including
Escherichia coli
. The genome exhibits the backbone and island mosaic structure of
E. coli
pathogens, albeit with much less horizontally transferred DNA and lacking 357 genes present in
E. coli
. The strain is distinctive in its large complement of insertion sequences, with several genomic rearrangements mediated by insertion sequences, 12 cryptic prophages, 372 pseudogenes, and 195
S. flexneri
-specific genes. The 2457T genome was also compared with that of a recently sequenced
S. flexneri
2a strain, 301. Our data are consistent with
Shigella
being phylogenetically indistinguishable from
E. coli
. The
S. flexneri
-specific regions contain many genes that could encode proteins with roles in virulence. Analysis of these will reveal the genetic basis for aspects of this pathogenic organism's distinctive lifestyle that have yet to be explained.
Wei, J, Goldberg, MB, Burland, V, Venkatesan, MM, Deng, W, Fournier, G, Mayhew, GF, Plunkett, G, Rose, DJ, Darling, A, Mau, B, Perna, NT, Payne, SM, Runyen-Janecky, LJ, Zhou, S, Schwartz, DC & Blattner, FR 2003, 'Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2a Strain 2457T', Infection and Immunity, vol. 71, no. 7, pp. 4223-4223.
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Weiss, JN, Qu, Z & Garfinkel, A 2003, 'Understanding biological complexity: lessons from the past', The FASEB Journal, vol. 17, no. 1, pp. 1-6.
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Wheatley, MG, McDonagh, AM, Brungs, MP, Chaplin, RP & Sizgek, E 2003, 'A study of reverse bias in a dye sensitised photoelectrochemical device', Solar Energy Materials and Solar Cells, vol. 76, no. 2, pp. 175-181.
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A dye-sensitized nanocrystalline solar subjected to reverse bias of800 mV showed no measurable loss in performance. However, at 2000 mV, a dramatic and irreversible reduction in the cells performance is observed. Raman spectroscopy experiments suggested that no desorption ofthe photosensitising dye occurred. Spectroelectrochemical experiments revealed that an irreversible loss ofintensity in the metal to ligand charge transfer band at 540nm occurred. In practical terms, these results indicate that cells which are incorrectly connected to an array ofcells or a system failure where potentials greater than 1500mV are present, may be irreversibly damaged.
White, AG, Gilchrist, A, Pryde, GJ, O'Brien, JL, Bremner, MJ & Langford, NK 2003, 'Measuring Controlled-NOT and two-qubit gate operation', J.Opt.Soc.Am.B, vol. 24, no. 2, pp. 172-183.
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Accurate characterisation of two-qubit gates will be critical for any
realisation of quantum computation. We discuss a range of measurements aimed at
characterising a two-qubit gate, specifically the CNOT gate. These measurements
are architecture-independent, and range from simple truth table measurements,
to single figure measures such as the fringe visibility, parity, fidelity, and
entanglement witnesses, through to whole-state and whole-gate measures achieved
respectively via quantum state and process tomography. In doing so, we examine
critical differences between classical and quantum gate operation.
White, TP, Botten, LC, McPhedran, RC & de Sterke, CM 2003, 'Ultracompact resonant filters in photonic crystals', OPTICS LETTERS, vol. 28, no. 24, pp. 2452-2454.
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A novel design for an ultracompact, high-Q notch-rejection filter is presented, and an analytic expression for the transmission properties is derived. This folded directional coupler shares the properties of a FabryPerot resonator and a directional coupler. We compare and contrast the device to high-Q FabryPerot cavities in photonic crystal waveguides.
White, TP, Kuhlmey, BT, McPhedran, RC, Maystre, D, Renversez, G, de Sterke, CM & Botten, LC 2003, 'Multipole method for microstructured optical fibers I Formulation: errata', Journal of the Optical Society of America B, vol. 20, no. 7, pp. 1581-1581.
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White, TP, Kuhlmey, BT, McPhedran, RC, Maystre, D, Renversez, G, Martijn de Sterke, C & Botten, LC 2003, 'Erratum: Multipole method for microstructured optical fibers. I. Formulation (Journal of the Optical Society of America B - Optical Physics (2002) 19 (2322-2330))', Journal of the Optical Society of America B: Optical Physics, vol. 20, no. 7, p. 1581.
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Williams, DBG, Caddy, J & Blann, K 2003, 'FRAGMENTATION AND CLEAVAGE REACTIONS MEDIATED BY SAMARIUM IODIDE. PART 2: α- AND β-ELIMINATION REACTIONS OF C-X SUBSTRATES', Organic Preparations and Procedures International, vol. 35, no. 3, pp. 307-360.
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Witcombe, DM, Belli, SI, Wallach, MG & Smith, NC 2003, 'Molecular characterisation of EmTFP250: a novel member of the TRAP protein family in Eimeria maxima', International Journal for Parasitology, vol. 33, no. 7, pp. 691-702.
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Wood, BR, Langford, SJ, Cooke, BM, Glenister, FK, Lim, J & McNaughton, D 2003, 'Raman imaging of hemozoin within the food vacuole ofPlasmodium falciparumtrophozoites', FEBS Letters, vol. 554, no. 3, pp. 247-252.
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Xiao, H, Liu, R, Craig, DC & Baker, AT 2003, 'Complexes of a New N3S2 Macrocycle: Synthesis, Structure and Electrospray Mass Spectrometry', Journal of Coordination Chemistry, vol. 56, no. 11, pp. 923-932.
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The silver(I) complex of a 15-membered macrocyclic ligand with an N3S2 donor set (L1) has been prepared by the reaction of 2,6-diacetylpyridine with 1,8-diamino-3,6-dithiaoctane in the presence of silver(I) ions. A reduced form (L2) of the ligand, in which the imine groups are converted to amines, was prepared by the reduction of the silver(I) complex by sodium borohydride. The ligand L2 has been characterised by various spectroscopic techniques and the copper(II) complex has been prepared. The metal complexes of L1 and L2 have been characterised by electrospray mass spectrometry and UV-visible spectroscopy. The copper(II) complex of L1 has been synthesised from [AgL1]+ via metal exchange. [CuL1](ClO4)2 crystallises in the orthorhombic space group Pna21 with a = 14.374(5) Aring, b = 12.947(3) Aring, c = 11.824(3) Aring with Z = 4. The geometry about the metal centre approximates trigonal bipyramidal with the pyridinyl nitrogen and the sulfur donors in the equatorial positions and the imine nitrogen donors in the axial positions. Metal ion exchange and the relative stabilities of metal complexes of the macrocyclic ligands were studied by electrospray mass spectrometry.
Yao, J, Wang, GX, Ahn, J-H, Liu, HK & Dou, SX 2003, 'Electrochemical studies of graphitized mesocarbon microbeads as an anode in lithium-ion cells', Journal of Power Sources, vol. 114, no. 2, pp. 292-297.
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Yatsunenko, S, Khachapuridze, A, Ivanov, VY, Godlewski, M, Khoi, LV, Gołacki, Z, Karczewski, G, Goldys, EM, Phillips, M, Klar, PJ & Heimbrodt, W 2003, 'Spin Dependent Interactions of Free Carriers and Manganese Ions in Nanostructures of Wide Band Gap II-Mn-VI Semiconductors - Mechanism of Lifetime Reduction', Acta Physica Polonica A, vol. 103, no. 6, pp. 643-648.
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Based on the results of optically detected magnetic resonance and time-resolved investigations we relate the observed lifetime shortening of intra-shell Mn2+ emission to spin dependent magnetic interactions between localized spins of Mn2+ ions and spins/magnetic moments of free carriers. We show that this mechanism is active in both bulk and in low dimensional structures, such as quantum wells, quantum dots, and nanostructures.
Yoshioka, H, Miura, T & Huete, AR 2003, 'An isoline-based translation technique of spectral vegetation index using EO-1 Hyperion data', IEEE TRANSACTIONS ON GEOSCIENCE AND REMOTE SENSING, vol. 41, no. 6, pp. 1363-1372.
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The availability of similar satellite data products from multiple sensors has focused much attention on the issue of continuity across satellite data products from past, current, and future sensors. Hyperspectral datasets acquired over a variety of land cover types are extremely useful in attempting to resolve spectral differences in the global datasets from different sensors. The datasets from the Earth Observing 1 (EO-1) Hyperion sensor are very suitable for this purpose, as is airborne hyperspectral data. In this paper, we examine the possibility of translating vegetation index (VI) data between two sensors by using imagery from the Hyperion sensor and utilizing the vegetation isoline concept. The objectives of this paper are to introduce and test a VI translation technique, focused on the spectral differences associated with sensor spectral bandpass filters. The translation of global VI datasets from one sensor to another requires a methodology applicable over various land cover types and throughout the wide ranges in VI values. To meet these requirements, a technique is proposed that utilizes adjustable translation coefficients, based on an estimation of the leaf area index value relative to a numerical canopy model. The theoretical basis of the proposed translation algorithm is explained in terms of the vegetation isoline concept. Its performance was tested through a numerical experiment with a Hyperion image, focusing on the normalized difference vegetation index (NDVI) as a representative vegetation index. The results indicate the potential of the isoline-based translation technique for stable translation throughout wide ranges of NDVI values.
Zaslawski, C 2003, 'Clinical reasoning in traditional Chinese medicine: implications for clinical research', Clinical Acupuncture and Oriental Medicine, vol. 4, no. 2-3, pp. 94-101.
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The diagnostic processes of Traditional Chinese Medicine (TCM) are fundamental to the practice of acupuncture. A review was conducted of some central issues underlying pattern differentiation and the integration of the TCM diagnostic system into acupuncture research. Problems with diagnostic reliability and the implications for clinical trials are discussed. Future research should include diagnostic reliability studies and the development of strategies for improving diagnostic reliability within acupuncture clinical trials.
Zaslawski, C 2003, 'The impact of ethics on the design and conduct of acupuncture clinical trials', Clinical Acupuncture and Oriental Medicine, vol. 4, no. 4, pp. 121-126.
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Zaslawski, CJ, Cobbin, D, Lidums, E & Petocz, P 2003, 'The impact of site specificity and needle manipulation on changes to pain pressure threshold following manual acupuncture: a controlled study', COMPLEMENTARY THERAPIES IN MEDICINE, vol. 11, no. 1, pp. 11-21.
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Zeppel, MJB, Murray, BR & Eamus, D 2003, 'The potential impact of dryland salinity on the threatened flora and fauna of New South Wales', Ecological Management & Restoration, vol. 4, pp. S53-S59.
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Zhang, XY, Friedl, MA, Schaaf, CB, Strahler, AH, Hodges, JCF, Gao, F, Reed, BC & Huete, A 2003, 'Monitoring vegetation phenology using MODIS', REMOTE SENSING OF ENVIRONMENT, vol. 84, no. 3, pp. 471-475.
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Accurate measurements of regional to global scale vegetation dynamics (phenology) are required to improve models and understanding of inter-annual variability in terrestrial ecosystem carbon exchange and climate-biosphere interactions. Since the mid-1980s, satellite data have been used to study these processes. In this paper, a new methodology to monitor global vegetation phenology from time series of satellite data is presented. The method uses series of piecewise logistic functions, which are fit to remotely sensed vegetation index (VI) data, to represent intra-annual vegetation dynamics. Using this approach, transition dates for vegetation activity within annual time series of VI data can be determined from satellite data. The method allows vegetation dynamics to be monitored at large scales in a fashion that it is ecologically meaningful and does not require pre-smoothing of data or the use of user-defined thresholds. Preliminary results based on an annual time series of Moderate Resolution Imaging Spectroradiometer (MODIS) data for the northeastern United States demonstrate that the method is able to monitor vegetation phenology with good success.
Zhou, X-P, Marsh, DJ, Morrison, CD, Chaudhury, AR, Maxwell, M, Reifenberger, G & Eng, C 2003, 'Germline Inactivation of PTEN and Dysregulation of the Phosphoinositol-3-Kinase/Akt Pathway Cause Human Lhermitte-Duclos Disease in Adults', The American Journal of Human Genetics, vol. 73, no. 5, pp. 1191-1198.
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Zhou, X-P, Waite, KA, Pilarski, R, Hampel, H, Fernandez, MJ, Bos, C, Dasouki, M, Feldman, GL, Greenberg, LA, Ivanovich, J, Matloff, E, Patterson, A, Pierpont, ME, Russo, D, Nassif, NT & Eng, C 2003, 'Germline PTEN Promoter Mutations and Deletions in Cowden/Bannayan-Riley-Ruvalcaba Syndrome Result in Aberrant PTEN Protein and Dysregulation of the Phosphoinositol-3-Kinase/Akt Pathway', The American Journal of Human Genetics, vol. 73, no. 2, pp. 404-411.
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Germline intragenic mutations in PTEN are associated with 80% of patients with Cowden syndrome (CS) and 60% of patients with Bannayan-Riley-Ruvalcaba syndrome (BRRS). The underlying genetic causes remain to be determined in a considerable proportion of classic CS and BRRS without a polymerase chain reaction (PCR)detectable PTEN mutation. We hypothesized that gross gene deletions and mutations in the PTEN promoter might alternatively account for a subset of apparently mutation-negative patients with CS and BRRS. Using real time and multiplex PCR techniques, we identified three germline hemizygous PTEN deletions in 122 apparently mutationnegative patients with classic CS (N=95) or BRRS (N=27). Fine mapping suggested that one deletion encompassed the whole gene and the other two included exon 1 and encompassed exons 1-5 of PTEN, respectively. Two patients with the deletion were diagnosed with BRRS, and one patient with the deletion was diagnosed with BRRS/CS overlap (features of both).
Zhu, Q-H, Hoque, M, Dennis, ES & Upadhyaya, NM 2003, 'Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)', BMC Plant Biology, vol. 3, no. 1, pp. 6-6.
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Background: The genetics of spikelet formation, a feature unique to grasses such as rice and maize, is yet to be fully understood, although a number of meristem and organ identity mutants have been isolated and investigated in Arabidopsis and maize. Using a two-element Ac/Ds transposon tagging system we have isolated a rice mutant, designated branched floretless 1 (bfl1) which is defective in the transition from spikelet meristem to floret meristem. Results: The bfl1 mutant shows normal differentiation of the primary rachis-branches leading to initial spikelet meristem (bract-like structure equivalent to rudimentary glumes) formation but fails to develop empty glumes and florets. Instead, axillary meristems in the bract-like structure produce sequential alternate branching, thus resulting in a coral shaped morphology of the branches in the developing panicle. The bfl1 mutant harbours a single Ds insertion in the upstream region of the BFL1 gene on chromosome 7 corresponding to PAC clone P0625E02 (GenBank Acc No. AP004570). RT-PCR analyses revealed a drastic reduction of BFL1 transcript levels in the bfl1 mutant compared to that in the wild-type. In each of the normal panicle-bearing progeny plants, from occasional revertant seeds of the vegetatively-propagated mutant plant, Ds was shown to be excised from the bfl1 locus. BFL1 contains an EREBP/AP2 domain and is most likely an ortholog of the maize transcription factor gene BRANCHED SILKLESS1 (BD1). Conclusions: bfl1 is a Ds-tagged rice mutant defective in the transition from spikelet meristem (SM) to floret meristem (FM). BFL1 is most probably a rice ortholog of the maize ERF (EREBP/AP2) transcription factor gene BD1. Based on the similarities in mutant phenotypes bfl1 is likely to be an allele of the previously reported frizzy panicle locus. © 2003 Zhu et al; licensee BioMed Central Ltd.
Zinder, Y 2003, 'An iterative algorithm for scheduling UET tasks with due dates and release times', EUROPEAN JOURNAL OF OPERATIONAL RESEARCH, vol. 149, no. 2, pp. 404-416.
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