Publications
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Books
Hoppenrath, M, Murray, S, Chomerat, N, Horiguchi, T & Rhodes, L 2023, Marine Benthic Dinoflagellates - their relevance for science and society, 2, Senckenberg Kleine Reihe, Germany.
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This book is the most comprehensive summary of our knowledge of benthic dinoflagellate species, including a compilation of their toxins.Dinoflagellates are important primary producers, symbionts and, at the same time, heterotrophic consumers and parasites. The species composition in benthic habitats is quite distinct from planktonic habitats. Our understanding of benthic dinoflagellate biodiversity, biogeography, toxicology and ecology has improved but is still rudimentary. Benthic harmful algal blooms have attracted increasing interest because of the impact of ciguatera poisoning, the most important food-borne disease of non-bacterial origin worldwide, which is caused by benthic dinoflagellate species. Ciguatera poisoning appears to have increased worldwide in recent years. This publication is an updated summary of the taxonomy of currently described taxa and includes morphological and for the first time molecular genetic information for species identification. It contains the most comprehensive review of benthic dinoflagellate toxins published so far. The book also describes methods of study, discusses phylogenetics and evolution, and highlights their scientific relevance as well as the health and economic impacts of benthic dinoflagellates for society.Compared to the first edition (KSR Vol. 54), 64 new species, 20 new genera and 19 new combinations are described. All chapters have been revised to reflect the latest knowledge and more than 150 new publications have been integrated. The methods section has been expanded to include light microscopy, molecular genetic methods for detection and quantification, and toxicity tests and toxin analyses. For example, a new sampling method that can also be used for quantification is described, as is the metabarcoding approach to biodiversity detection. Species descriptions have been expanded, in many cases with information on molecular identification. The chapter on toxins has been updated. The chapter Rel...
Chapters
Alonzo, M & Fu, S 2023, 'Cocaine' in Encyclopedia of Forensic Sciences, Third Edition, Elsevier, pp. 573-585.
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Alonzo, M & Fu, S 2023, 'Hallucinogens' in Encyclopedia of Forensic Sciences, Third Edition, Elsevier, pp. 107-121.
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Alonzo, M & Fu, S 2023, 'New Psychoactive Substances' in Encyclopedia of Forensic Sciences, Third Edition, Elsevier, pp. 660-681.
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Frick, AA, Spindler, X & Bleay, SM 2023, 'Chemistry of Fingerprint Residue' in Encyclopedia of Forensic Sciences: Volume 1-4, Third Edition, Elsevier, The Netherlands, pp. 521-529.
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The chemical composition of fingerprint residue is complex and highly variable. Several components are susceptible to chemical modifications following deposition, which can have a significant impact on fingerprint recovery. In more recent years, interest has increased significantly in the information that can be gained from the chemical constituents of latent fingerprints, both from the perspective of fingerprint detection, and the potential to gain further intelligence from this type of evidence.
Gaiani, G, Diogène, J & Campàs, M 2023, 'Addressing Ciguatera Risk Using Biosensors for the Detection of Gambierdiscus and Ciguatoxins' in The Handbook of Environmental Chemistry, Springer International Publishing, pp. 21-46.
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Jacka, L, Lindsay, J, Dowd, A & Naidu, S 2023, 'Hybrid and Flexible Learning' in Porter, DB, Campbell, C, Logan-Fleming, D & Jones, H (eds), Bringing the Australasian Technology and Practice Trends into Focus: The 2022–2023 Contextualising Horizon Report, ASCILITE.
Kelty, S, Green, N, Ribaux, O, Roux, C & Robertson, J 2023, 'Assessment of Occupational Stress' in Encyclopedia of Forensic Sciences, Third Edition, Elsevier, pp. 209-220.
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Kimonis, ER, Fleming, GE & Murrihy, RC 2023, 'Disruptive behavior disorders' in Handbook of Child and Adolescent Psychology Treatment Modules, Elsevier, pp. 205-226.
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McNevin, D & Padula, M 2023, 'Serology: Blood' in Encyclopedia of Forensic Sciences, Third Edition, Elsevier, pp. 470-483.
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Murray, ML & Murray, BR 2023, 'Phytoremediation of Agricultural Pollutants in the Tropics' in Wetlands for Remediation in the Tropics. Wetlands: Ecology, Conservation and Management, Springer, Cham, Switzerland, pp. 117-133.
Nguyen, DV, Nguyen, TT, Adha, RS, Zheng, L, Bui, XT, Ma, X & Vo, P 2023, 'Forward osmosis: Principle and applications in sustainable water and energy development' in Current Developments in Biotechnology and Bioengineering: Membrane Technology for Sustainable Water and Energy Management, Elsevier, The Netherlands, pp. 463-491.
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The global demand for freshwater is predicted to increase up to 30% by 2050. Therefore, water reuse/desalination for production of clean water and energy development are critically important. In the meantime, the forward osmosis (FO) membrane is an emerging process with the expectation of overcoming the challenges of the conventional pressure-driven membrane processes to achieve energy-efficient and sustainable water treatment. Herein this chapter introduces the theory of the forward osmosis process (definition, concept, and modeling equations for water flux, reverse solute flux prediction). Some critical factors (Temp, pH, FS, DS, CFV, configurations, etc.) affecting the performance of the FO membrane are presented systematically. In addition, the book chapter covers a summary of FO applications to the main sectors: desalination, wastewater treatment, water reuse, concentration of materials (juice, milk, algae, sludge, medicine, etc.), resource recovery (N, P, oil, heavy metals, etc.), agricultural fertigation, and energy generation. The chapter is expected to provide the readerships with a basic understanding of the FO process and its application to sustainable water and energy development.
Nienaber, C, Forbes, SL, Connor, M, Wescott, DJ, Ward, J, Steadman, DW & Colman, KL 2023, 'Forensic Taphonomy' in Encyclopedia of Forensic Sciences, Third Edition, Elsevier, pp. 700-711.
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Reimers, JR & McKemmish, LK 2023, 'Conceptual Understanding of Mixed-Valence Compounds and Its Extension to General Stereoisomerism' in Mixed-Valence Systems: Fundamentals, Synthesis, Electron Transfer, and Applications, WILEY-VCH, Germany, pp. 45-91.
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Isomerism in mixed-valence compounds is usually interpreted semi-quantitatively using the coupled harmonic oscillator model introduced by Hush. This review first considers the primary qualitative scenarios envisaged by his model: the weak-coupling regime in which non-adiabatic effects become critical, the intermediate-coupling regime typical of most chemical systems, the regime in which anharmonicity is critical, the strong-coupling regime typical of delocalized mixed-valence compounds, and the inverted regime in which reactions slow down with increasing exothermicity. In particular, different observable features, including, structural, spectroscopic, kinetic, Stark-effect, electrochemical, and spin resonance effects, are associated with each scenario. Extensions of the theory are then reviewed that facilitate applications to more general unimolecular isomerization processes. Treated uniformly, specific applications are then reviewed pertaining to traditional mixed-valence complexes including Prussian blue and the Creutz–Taube ion, primary charge separation during bacterial photosynthesis and in artificial devices, charge transport in molecular conductors, hydrogen bonding, the ammonia inversion reaction, identification of the primary feature causing the chemistry of first-row elements to differ so much from that of the later rows, and aromaticity.
Ross, PM, Scanes, E, Byrne, M, Ainsworth, TD, Donelson, JM, Foo, SA, Hutchings, P, Thiyagarajan, V & Parker, LM 2023, 'SURVIVING THE ANTHROPOCENE: THE RESILIENCE OF MARINE ANIMALS TO CLIMATE CHANGE' in Oceanography and Marine Biology: An Annual Review, Volume 61, Taylor & Francis, pp. 35-80.
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If marine organisms are to persist through the Anthropocene, they will need to be resilient, but what is resilience, and can resilience of marine organisms build within a single lifetime or over generations? The aim of this review is to evaluate the resilience capacity of marine animals in a time of unprecedented global climate change. Resilience is the capacity of an ecosystem, society, or organism to recover from stress. Marine organisms can build resilience to climate change through phenotypic plasticity or adaptation. Phenotypic plasticity involves phenotypic changes in physiology, morphology, or behaviour which improve the response of an organism in a new environment without altering their genotype. Adaptation is an evolutionary longer process, occurring over many generations and involves the selection of tolerant genotypes which shift the average phenotype within a population towards the fitness peak. Research on resilience of marine organisms has concentrated on responses to specific species and single climate change stressors. It is unknown whether phenotypic plasticity and adaptation of marine organisms including molluscs, echinoderms, polychaetes, crustaceans, corals, and fish will be rapid enough for the pace of climate change.
Roux, C & Jones, K 2023, 'Paper Analysis' in Encyclopedia of Forensic Sciences, Third Edition, Elsevier, pp. 88-99.
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Scanes, E, Shalders, TC, Coleman, MA, Champion, C, Benkendorff, K, Joyce, PWS, Middleton, J, Cunsolo, A, Harper, S, Falkenberg, LJ & Dupont, S 2023, 'Climate change and the ocean' in Oceans and Human Health: Opportunities and Impacts, pp. 265-288.
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The Earth's atmosphere is increasingly modified by human activities that are driving directional, sustained, and rapid global change. There will be a cascade of impacts on marine systems including sea level rise, storm events, ocean acidification, changes in salinity (primarily ocean freshening), and ocean warming and marine heatwaves. These global-scale changes will combine to impact human physical and mental health via changes to, for example, coastal ecosystems, infrastructure, and resources (e.g., freshwater supplies, food security and safety, medical compounds); disease transmission via mosquito-borne diseases, naturalized organisms, fecal-oral pathways; extreme conditions such as rainfall, storm surges, and flooding; pollutants, including in the air; and human displacement and migration. The impact of these global changes will depend on the local climate, nonclimate environmental conditions, and socioeconomic contexts in which they manifest. Understanding these complexities is central to managing our ocean so that we ensure human health under a future climate.
Spindler, X & Frick, AA 2023, 'Visualization of Fingerprints' in Encyclopedia of Forensic Sciences: Volume 1-4, Third Edition, Elsevier, The Netherlands, pp. 811-820.
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Visualization of latent fingerprints is carried out using a variety of optical, physical, chemical and physico-chemical methods. The technique(s) applied typically depend on the porosity of the surface (substrate), beginning with optical techniques and proceeding to more elaborate or destructive methods as necessary. While a vast range of visualization methods are currently available for routine use, constant developments are required to meet ongoing challenges including the proliferation of new surface types, availability of key reagents and the needs of jurisdictions with limited resources.
Tuch, BE, Cheng, IS, Dang, HP, Chen, H & Dargaville, TR 2023, 'Pluripotent stem cells as a therapy for type 1 diabetes' in Progress in Molecular Biology and Translational Science, Elsevier, pp. 363-378.
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Verma, NK, Naik, RR, Wong, BHS, Jayaraman, A, Fazil, MHUT, Lim, KY, Cheam, MS, Yuan, JCX, Ting, JKY, Mamidi, A, Lakshminarayanan, R, Lai, KO, Wong, JH, Fairley, LH, Salvatore Vincent, A, Qi, CLZ, Verma, R & Barron, AM 2023, 'Rare autoimmune and autoinflammatory neurologic disorders' in Translational Neuroimmunology, Volume 7, Elsevier, pp. 189-219.
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Ward, J & Watherston, J 2023, 'Quantitative and qualitative assessment of DNA recovered from human skeletal remains' in Forensic Genetic Approaches for Identification of Human Skeletal Remains, Elsevier, pp. 137-163.
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Ward, J, Watherston, J, Kahline, I, McMahon, TP & Edson, SM 2023, 'Genotyping and sequencing of DNA recovered from human skeletal remains using capillary electrophoresis (CE)' in Forensic Genetic Approaches for Identification of Human Skeletal Remains, Elsevier, pp. 285-323.
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Watherston, J & Ward, J 2023, 'Autosomal short tandem repeat (STR) profiling of human skeletal remains' in Forensic Genetic Approaches for Identification of Human Skeletal Remains, Elsevier, pp. 167-197.
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Wen, S, Bao, G & Jin, D 2023, 'Advanced optical properties of upconversion nanoparticles' in Encyclopedia of Nanomaterials, Elsevier, pp. 613-648.
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Zhang, J, Zhao, Y, Guo, X, Chen, C, Dong, CL, Liu, RS, Han, CP, Li, Y, Gogotsi, Y & Wang, G 2023, 'Single platinum atoms immobilized on an mxene as an efficient catalyst for the hydrogen evolution reaction' in MXenes: From Discovery to Applications of Two-Dimensional Metal Carbides and Nitrides, pp. 829-852.
Journal articles
A. Anwar, S, Srivastava, A & Zerouali, B 2023, 'On the role of land-surface hydrology schemes in simulating the daily maximum and minimum air temperatures of Australia using a regional climate model (RegCM4)', Journal of Water and Climate Change, vol. 14, no. 3, pp. 989-1011.
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Abbriano, RM, George, J, Kahlke, T, Commault, AS & Fabris, M 2023, 'Mobilization of a diatom mutator‐like element (
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Abdullah, A, Szkuta, B & Meakin, GE 2023, 'Effect of swabbing technique and duration on forensic DNA recovery', Science & Justice, vol. 63, no. 3, pp. 343-348.
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Afrose, D, Nikolic, V, Orlic, N, Mikovic, Z, Stefanovic, M, Cakic, Z, Hansbro, P, Su, P & McClements, L 2023, 'Uric acid is a promising biomarker and target of preeclampsia', Placenta, vol. 140, pp. e50-e50.
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Aharonovich, I 2023, 'Advances in Physics of Semiconductors', physica status solidi (b), vol. 260, no. 5.
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Aisbett, J, Drinkwater, EJ, Quarrie, KL & Woodcock, S 2023, 'Applying generalized funnel plots to help design statistical analyses', Statistical Papers, vol. 64, no. 1, pp. 355-364.
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Ajani, PA, Savela, H, Kahlke, T, Harrison, D, Jeffries, T, Kohli, GS, Verma, A, Laczka, O, Doblin, MA, Seymour, JR, Larsson, ME, Potts, J, Scanes, P, Gribben, PE, Harrison, L & Murray, SA 2023, 'Response of planktonic microbial assemblages to disturbance in an urban sub-tropical estuary', Water Research, vol. 243, pp. 120371-120371.
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Alamil, JMR, Xenaki, D, Manandhar, B, Paudel, KR, Hansbro, P, Oliver, B, Chellappan, DK & Dua, K 2023, 'Agarwood oil nanoemulsion attenuates production of lipopolysaccharide (LPS)-induced proinflammatory cytokines, IL-6 and IL-8 in human bronchial epithelial cells', EXCLI Journal : Experimental and Clinical Sciences, vol. 22, pp. 681-685.
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Alhamami, T, Roy, CP, Venter, H, Veltman, T, Truswell, A, Abraham, S, Sapula, SA, Carr, M, Djordjevic, SP & Trott, DJ 2023, 'Genomic profiling of Pasteurella multocida isolated from feedlot cases of bovine respiratory disease.', Vet Microbiol, vol. 283, pp. 109773-109773.
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Pasteurella multocida causes a range of diseases in many host species throughout the world, including bovine respiratory disease (BRD) which is predominantly seen in feedlot cattle. This study assessed genetic diversity among 139 P. multocida isolates obtained from post-mortem lung swabs of BRD-affected feedlot cattle in four Australian states: New South Wales, Queensland, South Australia, and Victoria during 2014-2019. Whole-genome sequencing (WGS) was used to determine capsular serogroup, lipopolysaccharide genotypes, multi-locus sequence types and phylogenetic relationships. Two capsular types (A and D), with most isolates (132/139; 95%) belonging to type A; and three lipopolysaccharide (LPS) genotypes were identified (L1 [6/139; 4.3%], L3 [124/139; 89.2%] and L6 [9/139; 6.4%)]). Multi-locus sequence types (STs) ST9, ST13, ST17, ST20, ST36, ST50, ST58, ST79, ST124, ST125, ST132, ST167, ST185, ST327, ST394, and three novel STs [ST396, ST397, and ST398] were identified, with ST394 (59/139; 42.4%) and ST79 (44/139; 32%) the most prevalent in all four states. Isolates displaying phenotypic resistance to single, dual or multiple antibiotics (macrolide, tetracycline and aminopenicillins) were predominantly ST394 (23/139; 17%). Laterally mobile elements identified in the resistant ST394 isolates included small plasmids, encoding macrolide and/or tetracycline resistance, distributed in all states; and chromosomally located integrative conjugative elements (ICEs) (4 ST394 and 1 ST125) from the same Queensland feedlot. This study highlights the genomic diversity, epidemiological relationships and AMR associations in bovine P. multocida isolates from Australia and provides insight into the unique ST prevalence compared to other major beef-producing countries.
Alharbi, KS, Javed Shaikh, MA, Imam, SS, Alshehri, S, Ghoneim, MM, Almalki, WH, Singh, SK, Kumar, D, Kumar, AP, Dua, K, Chellappan, DK, Paudel, KR & Gupta, G 2023, 'Role of Flavonoids in Management of Various Biological Targets inAlzheimer’s Disease: Evidence from Preclinical to Clinical Studies', Current Medicinal Chemistry, vol. 30, no. 18, pp. 2061-2074.
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Al‐Juboori, A, Zeng, HZJ, Nguyen, MAP, Ai, X, Laucht, A, Solntsev, A, Toth, M, Malaney, R & Aharonovich, I 2023, 'Quantum Key Distribution Using a Quantum Emitter in Hexagonal Boron Nitride', Advanced Quantum Technologies, vol. 6, no. 9.
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Allam, VSRR, Pavlidis, S, Liu, G, Kermani, NZ, Simpson, J, To, J, Donnelly, S, Guo, Y-K, Hansbro, PM, Phipps, S, Morand, EF, Djukanovic, R, Sterk, P, Chung, KF, Adcock, I, Harris, J & Sukkar, MB 2023, 'Macrophage migration inhibitory factor promotes glucocorticoid resistance of neutrophilic inflammation in a murine model of severe asthma.', Thorax, vol. 78, no. 7, pp. 661-673.
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BACKGROUND: Severe neutrophilic asthma is resistant to treatment with glucocorticoids. The immunomodulatory protein macrophage migration inhibitory factor (MIF) promotes neutrophil recruitment to the lung and antagonises responses to glucocorticoids. We hypothesised that MIF promotes glucocorticoid resistance of neutrophilic inflammation in severe asthma. METHODS: We examined whether sputum MIF protein correlated with clinical and molecular characteristics of severe neutrophilic asthma in the Unbiased Biomarkers for the Prediction of Respiratory Disease Outcomes (U-BIOPRED) cohort. We also investigated whether MIF regulates neutrophilic inflammation and glucocorticoid responsiveness in a murine model of severe asthma in vivo. RESULTS: MIF protein levels positively correlated with the number of exacerbations in the previous year, sputum neutrophils and oral corticosteroid use across all U-BIOPRED subjects. Further analysis of MIF protein expression according to U-BIOPRED-defined transcriptomic-associated clusters (TACs) revealed increased MIF protein and a corresponding decrease in annexin-A1 protein in TAC2, which is most closely associated with airway neutrophilia and NLRP3 inflammasome activation. In a murine model of severe asthma, treatment with the MIF antagonist ISO-1 significantly inhibited neutrophilic inflammation and increased glucocorticoid responsiveness. Coimmunoprecipitation studies using lung tissue lysates demonstrated that MIF directly interacts with and cleaves annexin-A1, potentially reducing its biological activity. CONCLUSION: Our data suggest that MIF promotes glucocorticoid-resistance of neutrophilic inflammation by reducing the biological activity of annexin-A1, a potent glucocorticoid-regulated protein that inhibits neutrophil accumulation at sites of inflammation. This represents a previously unrecognised role for MIF in the regulation of inflammation and points to MIF as a potential therapeutic target for the management of sev...
Alqudah, A, AbuDalo, R, Qnais, E, Wedyan, M, Oqal, M & McClements, L 2023, 'The emerging importance of immunophilins in fibrosis development', Molecular and Cellular Biochemistry, vol. 478, no. 6, pp. 1281-1291.
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Alvarez, PR, Krix, DW, Offord, CA & Murray, BR 2023, 'Impact of extreme heatwaves and life-history traits on seed germination responses in Cumberland Plain Woodland native plant species', Australian Journal of Botany, vol. 71, no. 7, pp. 395-405.
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Ambrose, SJ, Hamidian, M & Hall, RM 2023, 'The extensively antibiotic resistant ST111 Acinetobacter baumannii isolate RBH2 carries an extensive mobile element complement of plasmids, transposons and insertion sequences.', Plasmid, vol. 128, pp. 102707-102707.
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The complete genome of RBH2, a sporadic, carbapenem resistant ST111 Acinetobacter baumannii isolate from Brisbane, Australia was determined and analysed. RBH2 is extensively resistant and the chromosome includes two transposons carrying antibiotic resistance genes, AbaR4 (oxa23 in Tn2006) and Tn7::Tn2006 (dfrA1, sat2, aadA1, oxa23). The chromosome also includes two copies of Tn6175, a transposon carrying putative copper resistance genes, and 1-17 copies of six different insertion sequences. RBH2 has six plasmids ranging in size from 6 kb - 141 kb, four carrying antibiotic resistance genes. Plasmids pRBH2-1 (aadB) and pRBH2-2 (aphA6 in TnaphA6) were found to be essentially identical to known plasmids pRAY*-v1 and pS21-1, respectively. The largest plasmids, pRBH2-5 (oxa23 in AbaR4) and pRBH2-6 (oxa23 in AbaR4::ISAba11 and sul2, tet(B), strA and strB in Tn6172) have known transfer-proficient relatives. pRBH2-5, an RP-T1 (RepAci6) plasmid, also carries a different putative copper resistance transposon related to Tn6177 found in pS21-2. The backbone of pRBH2-5 is related to those of previously described RepAci6 plasmids pAb-G7-2 and pA85-3 but has some distinctive features. Three different RepAci6 backbone types were distinguished, Type 1 (pAb-G7-2), Type 2 (pA85-3) and Type 3 (pRBH2-5 and pS21-2). pRBH2-6 is closely related to pAB3 and their backbones differ by only 5 SNPs. Plasmids pRBH2-3 and pRBH2-4 do not carry antibiotic resistance genes. pRBH2-3 does not include an identifiable rep gene and is a novel plasmid type. pRBH2-4 is of the R3-T3 type and includes segments of the larger pABTJ2 that heads this group. Other ST111 genomes carry different plasmids.
Andersson, J, Kleinheinz, D, Ramach, U, Kiesenhofer, N, Ashenden, A, Valtiner, M, Holt, S, Koeper, I, Schmidpeter, PAM & Knoll, W 2023, 'Native Function of the Bacterial Ion Channel SthK in a Sparsely Tethered Lipid Bilayer Membrane Architecture', The Journal of Physical Chemistry B, vol. 127, no. 16, pp. 3641-3650.
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Anwar, SA, Malcheva, K & Srivastava, A 2023, 'Estimating the potential evapotranspiration of Bulgaria using a high-resolution regional climate model', Theoretical and Applied Climatology, vol. 152, no. 3-4, pp. 1175-1188.
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Armbrecht, L, Focardi, A, Lawler, K, O’Brien, P, Leventer, A, Noble, TL, Opdyke, B, Duffy, M, Evangelinos, D, George, SC, Lieser, J, López‐Quirós, A, Post, A, Ostrowski, M, Paulsen, I & Armand, L 2023, 'From the Surface Ocean to the Seafloor: Linking Modern and Paleo‐Genetics at the Sabrina Coast, East Antarctica (IN2017_V01)', Journal of Geophysical Research: Biogeosciences, vol. 128, no. 4.
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Ashique, S, Gupta, K, Gupta, G, Mishra, N, Singh, SK, Wadhwa, S, Gulati, M, Dureja, H, Zacconi, F, Oliver, BG, Paudel, KR, Hansbro, PM, Chellappan, DK & Dua, K 2023, 'Vitamin D—A prominent immunomodulator to prevent
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Bai, L, Song, A, Wang, L, Lei, X, Zhang, T, Tian, H, Liu, H, Qin, X, Wang, G & Shao, G 2023, 'Enhancement of hydrogen desorption for electrocatalytic hydrogen evolution on nickel-coupled graphite carbon nitride catalysts', Ionics, vol. 29, no. 1, pp. 323-330.
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Bai, X, Zhang, D, Xiong, Z, Yang, S, Pei, C, Sun, B & Ni, S 2023, 'Construction of hierarchical Li3VO4/NC sponge structure for high-performance lithium storage', Electrochimica Acta, vol. 462, pp. 142807-142807.
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Bailey, RL, Jun, S, Cowan, AE, Eicher-Miller, HA, Gahche, JJ, Dwyer, JT, Hartman, TJ, Mitchell, DC, Seguin-Fowler, RA, Carroll, RJ & Tooze, JA 2023, 'Major Gaps in Understanding Dietary Supplement Use in Health and Disease', Annual Review of Nutrition, vol. 43, no. 1, pp. 179-197.
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Balzer, MJ, Hitchcock, JN, Hadwen, WL, Kobayashi, T, Westhorpe, DP, Boys, C & Mitrovic, SM 2023, 'Experimental additions of allochthonous dissolved organic matter reveal multiple trophic pathways to stimulate planktonic food webs', Freshwater Biology, vol. 68, no. 5, pp. 821-836.
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Bani, SA, Patel, VK, Mehndiratta, S, Rajput, R, Kundu, RK, Singh, SK, Chellappan, DK, Kokkinis, S, De, RG, Collet, T, Paudel, KR, Hansbro, PM & Dua, K 2023, 'Dissecting the in vitro fate of plant-derived bioactive encapsulated nanoparticles in lung diseases', Food Bioscience, vol. 56, pp. 103205-103205.
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Bartels, N, Dilernia, NJ, Howlett, L & Camp, EF 2023, 'Stress event for “super corals” in Great Barrier Reef mangrove lagoon', Marine Biodiversity, vol. 53, no. 5.
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Bates, H, Zavafer, A, Szabó, M & Ralph, PJ 2023, 'The slow-phase of chlorophyll fluorescence induction curve reflects the electron transport rates of Photosystem II in vivo in Chlorella vulgaris', Journal of Applied Phycology, vol. 35, no. 1, pp. 109-116.
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Becchi, S, Chieng, B, Bradfield, LA, Capellán, R, Leung, BK & Balleine, BW 2023, 'Cognitive effects of thalamostriatal degeneration are ameliorated by normalizing striatal cholinergic activity', Science Advances, vol. 9, no. 25.
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Becker, A, Lowry, MB, Fowler, AM & Taylor, MD 2023, 'Hydroacoustic surveys reveal the distribution of mid-water fish around two artificial reef designs in temperate Australia', Fisheries Research, vol. 257, pp. 106509-106509.
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Bey, E, Hughes, C, Hogg, K, Chance, R & Petrou, K 2023, 'Ocean acidification reduces iodide production by the marine diatom Chaetoceros sp. (CCMP 1690)', Marine Chemistry, vol. 257, pp. 104311-104311.
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Bhadauria, AS, Dhungana, HN, Verma, V, Woodcock, S & Rai, T 2023, 'Studying the efficacy of isolation as a control strategy and elimination of tuberculosis in India: A mathematical model', Infectious Disease Modelling, vol. 8, no. 2, pp. 458-470.
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Bhaskaran, A & Wand, MP 2023, 'Dispersion parameter extension of precise generalized linear mixed model asymptotics', Statistics & Probability Letters, vol. 193, pp. 109691-109691.
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Billings, JL, Hilton, JBW, Liddell, JR, Hare, DJ & Crouch, PJ 2023, 'Fundamental Neurochemistry Review: Copper availability as a potential therapeutic target in progressive supranuclear palsy: Insight from other neurodegenerative diseases', Journal of Neurochemistry, vol. 167, no. 3, pp. 337-346.
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Boyton, I, Valenzuela, SM, Collins-Praino, LE & Care, A 2023, 'Neuronanomedicine for Alzheimer’s and Parkinson’s disease: Current progress and a guide to improve clinical translation', Brain, Behavior, and Immunity.
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Bradfield, LA, Becchi, S & Kendig, MD 2023, 'Striatal Acetylcholine and Dopamine Interactions Produce Situation-appropriate Action Selection', Current Neuropharmacology, vol. 21.
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Brennan, LE, Kumawat, LK, Piatek, ME, Kinross, AJ, McNaughton, DA, Marchetti, L, Geraghty, C, Wynne, C, Tong, H, Kavanagh, ON, O’Sullivan, F, Hawes, CS, Gale, PA, Kavanagh, K & Elmes, RBP 2023, 'Potent antimicrobial effect induced by disruption of chloride homeostasis', Chem, vol. 9, no. 11, pp. 3138-3158.
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Brito, BP, Frost, MJ, Anantanawat, K, Jaya, F, Batterham, T, Djordjevic, SP, Chang, W-S, Holmes, EC, Darling, AE & Kirkland, PD 2023, 'Expanding the range of the respiratory infectome in Australian feedlot cattle with and without respiratory disease using metatranscriptomics.', Microbiome, vol. 11, no. 1, p. 158.
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BACKGROUND: Bovine respiratory disease (BRD) is one of the most common diseases in intensively managed cattle, often resulting in high morbidity and mortality. Although several pathogens have been isolated and extensively studied, the complete infectome of the respiratory complex consists of a more extensive range unrecognised species. Here, we used total RNA sequencing (i.e., metatranscriptomics) of nasal and nasopharyngeal swabs collected from animals with and without BRD from two cattle feedlots in Australia. RESULTS: A high abundance of bovine nidovirus, influenza D, bovine rhinitis A and bovine coronavirus was found in the samples. Additionally, we obtained the complete or near-complete genome of bovine rhinitis B, enterovirus E1, bovine viral diarrhea virus (sub-genotypes 1a and 1c) and bovine respiratory syncytial virus, and partial sequences of other viruses. A new species of paramyxovirus was also identified. Overall, the most abundant RNA virus, was the bovine nidovirus. Characterisation of bacterial species from the transcriptome revealed a high abundance and diversity of Mollicutes in BRD cases and unaffected control animals. Of the non-Mollicutes species, Histophilus somni was detected, whereas there was a low abundance of Mannheimia haemolytica. CONCLUSION: This study highlights the use of untargeted sequencing approaches to study the unrecognised range of microorganisms present in healthy or diseased animals and the need to study previously uncultured viral species that may have an important role in cattle respiratory disease. Video Abstract.
Brockbals, L, Garrett-Rickman, S, Fu, S, Ueland, M, McNevin, D & Padula, MP 2023, 'Estimating the time of human decomposition based on skeletal muscle biopsy samples utilizing an untargeted LC–MS/MS-based proteomics approach', Analytical and Bioanalytical Chemistry, vol. 415, no. 22, pp. 5487-5498.
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Brown, A, Lamb, E, Deo, A, Pasin, D, Liu, T, Zhang, W, Su, S & Ueland, M 2023, 'The use of novel electronic nose technology to locate missing persons for criminal investigations', iScience, vol. 26, no. 4, pp. 106353-106353.
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Brown, AO, Frankham, GJ, Stuart, BH & Ueland, M 2023, 'Assessing the impact of habitat and captivity status on volatilome profiles of the illegally traded shingleback, Tiliqua rugosa', Forensic Science International: Animals and Environments, vol. 4, pp. 100071-100071.
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Brown, AO, Green, PJ, Frankham, GJ, Stuart, BH & Ueland, M 2023, 'Insights into the Effects of Violating Statistical Assumptions for Dimensionality Reduction for Chemical “-omics” Data with Multiple Explanatory Variables', ACS Omega, vol. 8, no. 24, pp. 22042-22054.
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Bubathi, V, Leslie, L, Speer, M, Hartigan, J, Wang, J & Gupta, A 2023, 'Impact of Accelerated Climate Change on Maximum Temperature Differences between Western and Coastal Sydney', Climate, vol. 11, no. 4, pp. 76-76.
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The aims of this study are to assess the impacts of accelerated climate change on summer maximum temperatures since the early 1990s in the Australian city of Sydney’s eastern coastal and western inland suburbs. Western Sydney currently experiences far more intense summer (December–March) heat waves than coastal Sydney, with maximum temperatures exceeding those of coastal Sydney by up to 10 °C. Aside from increased bushfire danger, extreme temperature days pose health and socio-economic threats to western Sydney. Permutation tests of consecutive summer periods, 1962–1991 and 1992–2021, are employed to determine the differential climate change impacts on maximum summer temperatures at two locations: Sydney and Richmond, representative of eastern and western Sydney, respectively. Attribution of observed maximum summer temperature trends in Sydney and Richmond was performed using machine learning techniques applied to known Australian region oceanic and atmospheric climate drivers. It was found that there is a marked disparity in the percentage of summer days above the 95th percentile during the accelerated climate change period (1992–2021) between Richmond (+35%) and Sydney (−24%), relative to 1962–1991. The climate drivers detected as attributes were similar in both Sydney and Richmond, but, unsurprisingly, Sydney was more affected than Richmond by the oceanic climate drivers.
Buckley, T, Karanam, K, Han, H, Vo, HNP, Shukla, P, Firouzi, M & Rudolph, V 2023, 'Effect of different co-foaming agents on PFAS removal from the environment by foam fractionation', Water Research, vol. 230, pp. 119532-119532.
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Buckley, T, Vuong, T, Karanam, K, Vo, PHN, Shukla, P, Firouzi, M & Rudolph, V 2023, 'Using foam fractionation to estimate PFAS air-water interface adsorption behaviour at ng/L and µg/L concentrations', Water Research, vol. 239, pp. 120028-120028.
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Budden, KF, Gellatly, SL, Vaughan, A, Amorim, N, Horvat, JC, Hansbro, NG, Wood, DLA, Hugenholtz, P, Dennis, PG, Wark, PAB & Hansbro, PM 2023, 'Probiotic Bifidobacterium longum subsp. longum Protects against Cigarette Smoke-Induced Inflammation in Mice.', Int J Mol Sci, vol. 24, no. 1, pp. 252-252.
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Bifidobacterium are prominent gut commensals that produce the short-chain fatty acid (SCFA) acetate, and they are often used as probiotics. Connections between the gut and the lung, termed the gut-lung axis, are regulated by the microbiome. The gut-lung axis is increasingly implicated in cigarette smoke-induced diseases, and cigarette smoke exposure has been associated with depletion of Bifidobacterium species. In this study, we assessed the impact of acetate-producing Bifidobacterium longum subsp. longum (WT) and a mutant strain with an impaired acetate production capacity (MUT) on cigarette smoke-induced inflammation. The mice were treated with WT or MUT B. longum subsp. longum and exposed to cigarette smoke for 8 weeks before assessments of lung inflammation, lung tissue gene expression and cecal SCFAs were performed. Both strains of B. longum subsp. longum reduced lung inflammation, inflammatory cytokine expression and adhesion factor expression and alleviated cigarette smoke-induced depletion in caecum butyrate. Thus, the probiotic administration of B. longum subsp. longum, irrespective of its acetate-producing capacity, alleviated cigarette smoke-induced inflammation and the depletion of cecal butyrate levels.
Burke, C & Conway, Y 2023, 'Factors that influence hospital nurses’ escalation of patient care in response to their early warning score: A qualitative evidence synthesis', Journal of Clinical Nursing, vol. 32, no. 9-10, pp. 1885-1934.
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Butterworth, NJ, Benbow, ME & Barton, PS 2023, 'The ephemeral resource patch concept', Biological Reviews, vol. 98, no. 3, pp. 697-726.
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Butterworth, NJ, Wallman, JF, Johnston, NP, Dawson, BM, Sharp-Heward, J & McGaughran, A 2023, 'The blowfly Chrysomya latifrons inhabits fragmented rainforests, but shows no population structure', Oecologia, vol. 201, no. 3, pp. 703-719.
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Bylinkin, A, Calavalle, F, Barra-Burillo, M, Kirtaev, RV, Nikulina, E, Modin, E, Janzen, E, Edgar, JH, Casanova, F, Hueso, LE, Volkov, VS, Vavassori, P, Aharonovich, I, Alonso-Gonzalez, P, Hillenbrand, R & Nikitin, AY 2023, 'Dual-Band Coupling of Phonon and Surface Plasmon Polaritons with Vibrational and Electronic Excitations in Molecules', Nano Letters, vol. 23, no. 9, pp. 3985-3993.
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Cain, AK & Hamidian, M 2023, 'Portrait of a killer: Uncovering resistance mechanisms and global spread of Acinetobacter baumannii.', PLoS Pathog, vol. 19, no. 8, pp. e1011520-e1011520.
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Antibiotic resistance is a growing global concern in the field of medicine as it renders bacterial infections difficult to treat and often more severe. Acinetobacter baumannii is a gram-negative bacterial pathogen causing a wide range of infections, including pneumonia, sepsis, urinary tract infections, and wound infections. A. baumannii has emerged as a significant healthcare-associated pathogen due to its high level of antibiotic resistance. The global spread of antibiotic-resistant strains of A. baumannii has resulted in limited treatment options, leading to increased morbidity and mortality rates, especially in vulnerable populations such as the elderly and immunocompromised individuals, as well as longer hospital stays and higher healthcare costs. Further complicating the situation, multi- and pan-drug-resistant strains of A. baumannii are becoming increasingly common, and these deadly strains are resistant to all or almost all available antibiotics. A. baumannii employs various clever strategies to develop antibiotic resistance, including horizontal transfer of resistance genes, overexpression of inherent efflux pumps that remove drugs from the cell, intrinsic mutations, combined with natural selection under antibiotic selective pressure leading to emergence of successful resistance clones. The typical multidrug resistance phenotype of A. baumannii is, therefore, an orchestrated collimation of all these mechanisms combined with the worldwide spread of 'global clones,' rendering infections caused by this pathogen challenging to control and treat. To address the escalating problem of antibiotic resistance in A. baumannii, there is a need for increased surveillance, strict infection control measures, and the development of new treatment strategies, requiring a concerted effort by healthcare professionals, researchers, and policymakers.
Calders, K, Brede, B, Newnham, G, Culvenor, D, Armston, J, Bartholomeus, H, Griebel, A, Hayward, J, Junttila, S, Lau, A, Levick, S, Morrone, R, Origo, N, Pfeifer, M, Verbesselt, J & Herold, M 2023, 'StrucNet: a global network for automated vegetation structure monitoring', Remote Sensing in Ecology and Conservation, vol. 9, no. 5, pp. 587-598.
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Cannon, SE, Donner, SD, Liu, A, González Espinosa, PC, Baird, AH, Baum, JK, Bauman, AG, Beger, M, Benkwitt, CE, Birt, MJ, Chancerelle, Y, Cinner, JE, Crane, NL, Denis, V, Depczynski, M, Fadli, N, Fenner, D, Fulton, CJ, Golbuu, Y, Graham, NAJ, Guest, J, Harrison, HB, Hobbs, JA, Hoey, AS, Holmes, TH, Houk, P, Januchowski‐Hartley, FA, Jompa, J, Kuo, C, Limmon, GV, Lin, YV, McClanahan, TR, Muenzel, D, Paddack, MJ, Planes, S, Pratchett, MS, Radford, B, Reimer, JD, Richards, ZT, Ross, CL, Rulmal, J, Sommer, B, Williams, GJ & Wilson, SK 2023, 'Macroalgae exhibit diverse responses to human disturbances on coral reefs', Global Change Biology, vol. 29, no. 12, pp. 3318-3330.
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Cant, J, Reimer, JD, Sommer, B, Cook, KM, Kim, SW, Sims, CA, Mezaki, T, O'Flaherty, C, Brooks, M, Malcolm, HA, Pandolfi, JM, Salguero‐Gómez, R & Beger, M 2023, 'Coral assemblages at higher latitudes favor short‐term potential over long‐term performance', Ecology, vol. 104, no. 9.
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Carter, DJ, Byrne, MK, Djordjevic, SP, Robertson, H, Labbate, M, Morgan, BS & Billington, L 2023, 'Personal Data for Public Benefit: The Regulatory Determinants of Social Licence for Technologically Enhanced Antimicrobial Resistance Surveillance.', J Law Med, vol. 30, no. 1, pp. 179-190.
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Technologically enhanced surveillance systems have been proposed for the task of monitoring and responding to antimicrobial resistance (AMR) in both human, animal and environmental contexts. The use of these systems is in their infancy, although the advent of COVID-19 has progressed similar technologies in response to that pandemic. We conducted qualitative research to identify the Australian public's key concerns about the ethical, legal and social implications of an artificial intelligence (AI) and machine learning-enhanced One Health AMR surveillance system. Our study provides preliminary evidence of public support for AI/machine learning-enhanced One Health monitoring systems for AMR, provided that three main conditions are met: personal health care data must be deidentified; data use and access must be tightly regulated under strong governance; and the system must generate high-quality, reliable analyses to guide trusted health care decision-makers.
Chakraborty, A, Paudel, KR, Wang, C, De, RG, Chellappan, DK, Hansbro, P, Samuel, CS & Dua, K 2023, 'Anti-inflammatory and anti-fibrotic effects of berberine-loaded liquid crystalline nanoparticles', EXCLI Journal : Experimental and Clinical Sciences, vol. 22, pp. 1104-1108.
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Champion, C, Lawson, JR, Pardoe, J, Cruz, DO, Fowler, AM, Jaine, F, Schilling, HT & Coleman, MA 2023, 'Multi-criteria analysis for rapid vulnerability assessment of marine species to climate change', Climatic Change, vol. 176, no. 8.
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Chan, Y, Raju, AVSR, Paudel, KR, Singh, SK, Gulati, M, Dhanasekaran, M, Gupta, PK, Jha, NK, Devkota, HP, Gupta, G, Hansbro, PM, Oliver, BGG, Chellappan, DK & Dua, K 2023, 'Nutraceuticals: unlocking newer paradigms in the mitigation of inflammatory lung diseases', Critical Reviews in Food Science and Nutrition, vol. 63, no. 19, pp. 1-31.
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Chau, K, Fleck, R, Irga, PJ, Torpy, FR, Wilkinson, SJ & Castel, A 2023, 'Hempcrete as a substrate for fungal growth under high humidity and variable temperature conditions', Construction and Building Materials, vol. 398, pp. 132373-132373.
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Bio-based alternatives for existing construction materials can be used to reduce the carbon footprint of the built environment. Hempcrete is one of these materials and is both an excellent hygric/thermal regulator and is carbon negative. However, this novel material is still incompletely researched, especially its fungal growth potential specifically within warm and humid environments. The incorporation of significant biological material within hempcrete can enable it to act as a microbial growth medium, with the corresponding potential for the release of bioaerosols. The aim of this research was thus to investigate the overall practicality of hempcrete implementation in a humid climate. To achieve this, the endogenous fungal genera on a sample of hempcrete were identified, fungal propagules aerosolized from a hempcrete sample enumerated, and a range of temperatures tested to determine their effect on fungi growth determined. Trials were performed to determine whether hempcrete can be effectively decontaminated with common materials to manage microbial growth. Under high humidity, fungal propagule emissions were high with low diversity, with potentially allergenic fungi detected. Disinfection of high fungal load hempcrete samples was able to reduce ∼94% of the fungal observations and reduce aerosolized counts to average background tropical fungal counts. The range of temperatures tested were not found to effect fungal growth, contrary to the consensus of the literature. Overall, these properties make hempcrete suited to humid areas, however, further research to investigate the potential effects of fungi on the material remains lacking.
Chen, H, Kimyon, O, Chen, R, Gunawan, C, Ramandi, HL, Canbulat, I & Saydam, S 2023, 'The effectiveness of epoxy coating for preventing microbially induced corrosion of rock bolts', IOP Conference Series: Earth and Environmental Science, vol. 1124, no. 1, pp. 012097-012097.
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Chen, Y, Gale, A, Yamamura, K, Horder, J, Condos, A, Watanabe, K, Taniguchi, T, Toth, M & Aharonovich, I 2023, 'Annealing of blue quantum emitters in carbon-doped hexagonal boron nitride', Applied Physics Letters, vol. 123, no. 4.
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Chen, Y, Li, C, Yang, T, Ekimov, EA, Bradac, C, Ha, ST, Toth, M, Aharonovich, I & Tran, TT 2023, 'Real-Time Ratiometric Optical Nanoscale Thermometry', ACS Nano, vol. 17, no. 3, pp. 2725-2736.
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Chen, Y, White, S, Ekimov, EA, Bradac, C, Toth, M, Aharonovich, I & Tran, TT 2023, 'Ultralow-Power Cryogenic Thermometry Based on Optical-Transition Broadening of a Two-Level System in Diamond', ACS Photonics, vol. 10, no. 8, pp. 2481-2487.
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Cryogenic temperatures are the prerequisite for many advanced scientific applications and technologies. The accurate determination of temperature in this range and at the submicrometer scale is, however, nontrivial. This is due to the fact that temperature reading in cryogenic conditions can be inaccurate due to optically induced heating. Here, we present an ultralow-power, optical thermometry technique that operates at cryogenic temperatures. The technique exploits the temperature-dependent linewidth broadening measured by resonant photoluminescence of a two-level system: a germanium-vacancy color center in a nanodiamond host. The proposed technique achieves a relative sensitivity of ∼20% K-1, at 5 K. This is higher than any other all-optical nanothermometry method. Additionally, it achieves such sensitivities while employing excitation powers of just a few tens of nanowatts, several orders of magnitude lower than other traditional optical thermometry protocols. To showcase the performance of the method, we demonstrate its ability to accurately read out local differences in temperatures at various target locations of a custom-made microcircuit. Our work is a step toward the advancement of nanoscale optical thermometry at cryogenic temperatures.
Chhor, M, Law, W, Pavlovic, M, Aksentijevic, D, McGrath, K & McClements, L 2023, 'Diagnostic and prognostic biomarkers reflective of cardiac remodelling in diabetes mellitus: A scoping review', Diabetic Medicine, vol. 40, no. 5.
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Clain, C, Stewart, J, Fowler, A & Diamond, S 2023, 'Reproductive biology of largehead hairtail (Trichiurus lepturus) in south-eastern Australia', Aquaculture and Fisheries, vol. 8, no. 2, pp. 148-158.
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Knowledge of reproductive biology and life-history traits of populations exploited by fisheries is important for their sustainable management. We investigated the life-history traits of Trichiurus lepturus (largehead hairtail) in south-eastern Australia; a region of low exploitation for this otherwise heavily exploited circumglobal species, to investigate whether there were differences in the reproductive biology and life-history traits in the south-east Australian population compared with those in other regions. We also used histological sections to examine male and female gonads at a microscopic level. Trichiurus lepturus in south-eastern Australia had a greater maximum length (193 cm total length (TL)), matured at a larger length (108 cm TL at 50% mature) and had a spawning period (March to September, Austral winter) that was inconsistent with other regions. The overall sex ratio of 1:0.4 females: males was consistent with a female dominant sex ratio observed in other regions, particularly in larger length classes. However, females in the current study dominated samples from both estuarine and coastal habitats, as well as during the spawning and non-spawning periods, which is not consistent with the patterns found in other regions. Differences in south-eastern Australia may relate to limited fishing pressure, genetic variation, or differences in environmental factors that influence reproductive development, including temperature, trophic resources and habitat.
Clarke, RJ, Lev, B, Chennath, M, Allen, TW, Cranfield, CG, Blayney, E-L & Cornelius, F 2023, 'Involvement of alpha-subunit N-termini in the mechanism and regulation of the Na+,K+- and H+,K+-ATPases', Biophysical Journal, vol. 122, no. 3, pp. 529a-529a.
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Clover Ree, L, Chadwick, S & Moret, S 2023, 'Comparison of carbon and iron oxide based powder suspension formulations', Forensic Science International, vol. 347, pp. 111685-111685.
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Collins, S, Maestrini, L, Hui, FKC, Stuart, B & Ueland, M 2023, 'The use of generalized linear mixed models to investigate postmortem lipids in textiles', iScience, vol. 26, no. 8, pp. 107371-107371.
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Cooney, C, Sommer, B, Marzinelli, EM & Figueira, WF 2023, 'The role of microbial biofilms in range shifts of marine habitat-forming organisms', Trends in Microbiology.
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Cooper, GE, Mayall, J, Donovan, C, Haw, TJ, Budden, KF, Hansbro, NG, Blomme, EE, Maes, T, Kong, CW, Horvat, JC, Khakoo, SI, Wilkinson, TMA, Hansbro, PM & Staples, KJ 2023, 'Antiviral Responses of Tissue-resident CD49a Lung Natural KillerCells Are Dysregulated in Chronic Obstructive Pulmonary Disease', Am J Respir Crit Care Med, vol. 207, no. 5, pp. 553-565.
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RATIONALE: Tissue-resident natural killer cells have been identified in numerous organs, but little is known about their functional contribution to respiratory immunity, in particular during chronic lung diseases such as COPD. OBJECTIVES: To investigate the phenotype and antiviral responses of trNK cells in murine cigarette smoke-induced experimental COPD and in human lung parenchyma from COPD donors. METHODS: Mice were exposed to cigarette smoke for 10 weeks to induce COPD-like lung disease. Lung tissue resident NK cell phenotypes and function were analysed by flow cytometry in both murine and human disease with and without challenge with influenza A virus. MEASUREMENTS AND MAIN RESULTS: In the mouse lung CD49a+CD49b+EOMES+ and CD49a+CD49b-EOMESlo NK cell populations had a distinct phenotype compared with CD49a- circulating NK cells. CD49a+ NK cells were more extensively altered earlier in disease onset than circulating NK cells and increased proportions of CD49a+ NK cells correlated with worsening disease in both murine and human COPD. Furthermore, the presence of lung disease delayed both circulating and tissue-resident NK cell functional responses to influenza infection. CD49a+ NK cells markedly increased their NKG2D, CD103 and CD69 expression in experimental COPD following influenza infection, and human CD49a+ NK cells were hyperactive to ex vivo influenza infection in COPD donors. CONCLUSIONS: Collectively, these results demonstrate that tissue-resident NK cell function is altered in cigarette smoke-induced disease and suggests that smoke exposure may aberrantly prime tissue-resident NK cell responsiveness to viral infection. This may contribute to excess inflammation during viral exacerbations of COPD.
Courtney Jones, SK, Geange, SR, Hanea, A, Camac, J, Hemming, V, Doobov, B, Leigh, A & Nicotra, AB 2023, 'IDEAcology: An interface to streamline and facilitate efficient, rigorous expert elicitation in ecology', Methods in Ecology and Evolution, vol. 14, no. 8, pp. 2019-2028.
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Cowan, AE, Jun, S, Tooze, JA, Dodd, KW, Gahche, JJ, Eicher-Miller, HA, Guenther, PM, Dwyer, JT, Potischman, N, Bhadra, A, Carroll, RJ & Bailey, RL 2023, 'A narrative review of nutrient based indexes to assess diet quality and the proposed total nutrient index that reflects total dietary exposures', Critical Reviews in Food Science and Nutrition, vol. 63, no. 12, pp. 1722-1732.
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A priori dietary indices provide a standardized, reproducible way to evaluate adherence to dietary recommendations across different populations. Existing nutrient-based indices were developed to reflect food/beverage intake; however, given the high prevalence of dietary supplement (DS) use and its potentially large contribution to nutrient intakes for those that use them, exposure classification without accounting for DS is incomplete. The purpose of this article is to review existing nutrient-based indices and describe the development of the Total Nutrient Index (TNI), an index developed to capture usual intakes from all sources of under-consumed micronutrients among the U.S. population. The TNI assesses U.S. adults' total nutrient intakes relative to recommended nutrient standards for eight under-consumed micronutrients identified by the Dietary Guidelines for Americans: calcium, magnesium, potassium, choline, and vitamins A, C, D, E. The TNI is scored from 0 to 100 (truncated at 100). The mean TNI score of U.S. adults (≥19 y; n = 9,954) based on dietary data from NHANES 2011-2014, was 75.4; the mean score for the index ignoring DS contributions was only 69.0 (t-test; p < 0.001). The TNI extends existing measures of diet quality by including nutrient intakes from all sources and was developed for research, monitoring, and policy purposes.
Cui, G, Konciute, MK, Ling, L, Esau, L, Raina, J-B, Han, B, Salazar, OR, Presnell, JS, Rädecker, N, Zhong, H, Menzies, J, Cleves, PA, Liew, YJ, Krediet, CJ, Sawiccy, V, Cziesielski, MJ, Guagliardo, P, Bougoure, J, Pernice, M, Hirt, H, Voolstra, CR, Weis, VM, Pringle, JR & Aranda, M 2023, 'Molecular insights into the Darwin paradox of coral reefs from the sea anemone Aiptasia', Science Advances, vol. 9, no. 11.
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Cummins, ML, Li, D, Ahmad, A, Bushell, R, Noormohammadi, AH, Wijesurendra, DS, Stent, A, Marenda, MS & Djordjevic, SP 2023, 'Whole Genome Sequencing of Avian Pathogenic Escherichia coli Causing Bacterial Chondronecrosis and Osteomyelitis in Australian Poultry.', Microorganisms, vol. 11, no. 6, pp. 1513-1513.
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Bacterial chondronecrosis with osteomyelitis (BCO) impacts animal welfare and productivity in the poultry industry worldwide, yet it has an understudied pathogenesis. While Avian Pathogenic Escherichia coli (APEC) are known to be one of the main causes, there is a lack of whole genome sequence data, with only a few BCO-associated APEC (APECBCO) genomes available in public databases. In this study, we conducted an analysis of 205 APECBCO genome sequences to generate new baseline phylogenomic knowledge regarding the diversity of E. coli sequence types and the presence of virulence associated genes (VAGs). Our findings revealed the following: (i) APECBCO are phylogenetically and genotypically similar to APEC that cause colibacillosis (APECcolibac), with globally disseminated APEC sequence types ST117, ST57, ST69, and ST95 being predominate; (ii) APECBCO are frequent carriers of ColV-like plasmids that carry a similar set of VAGs as those found in APECcolibac. Additionally, we performed genomic comparisons, including a genome-wide association study, with a complementary collection of geotemporally-matched genomes of APEC from multiple cases of colibacillosis (APECcolibac). Our genome-wide association study found no evidence of novel virulence loci unique to APECBCO. Overall, our data indicate that APECBCO and APECcolibac are not distinct subpopulations of APEC. Our publication of these genomes substantially increases the available collection of APECBCO genomes and provides insights for the management and treatment strategies of lameness in poultry.
Dahal, A, McNevin, D, Chikhani, M & Ward, J 2023, 'An interdisciplinary forensic approach for human remains identification and missing persons investigations', WIREs Forensic Science, vol. 5, no. 4.
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Dang, K, Ryan, LM, Akkaya Hocagil, T, Cook, RJ, Richardson, GA, Day, NL, Coles, CD, Carmichael Olson, H, Jacobson, SW & Jacobson, JL 2023, 'Bayesian modelling of effects of prenatal alcohol exposure on child cognition based on data from multiple cohorts', Australian & New Zealand Journal of Statistics, vol. 65, no. 3, pp. 167-186. Daniels, RK, Arnold, MD, Heywood, ZE, Mallinson, JB, Bones, PJ & Brown, SA 2023, 'Brainlike Networks of Nanowires and Nanoparticles: A Change of Perspective', Physical Review Applied, vol. 20, no. 3. The connectivity of self-assembled networks of nanowires and nanoparticles is believed to strongly influence their performance in brainlike (neuromorphic) computing applications. Here we present a new perspective on the connectivity of these networks in which their neuronlike active elements are viewed in the same way as the nodes in artificial and biological neuronal networks. We consider two-dimensional and quasi-three-dimensional networks of nanowires and percolating networks of nanoparticles and show that, from this new perspective, they all have similar small-world characteristics. Other characteristics which may impact the computational performance of the networks are also investigated, including their assortativity and the scalefree nature of the nanoparticle networks. Taken together, these results allow comparison of key network characteristics for a variety of self-assembled nanoscale networks, and provide a basis for detailed investigations of computational performance. Datsyuk, JK, Paudel, KR, Rajput, R, Kokkinis, S, El, ST, Singh, SK, Gupta, G, Chellappan, DK, Yeung, S, Hansbro, PM, Oliver, BGG, Santos, HA, Dua, K & De, RG 2023, 'Emerging applications and prospects of NFκB decoy oligodeoxynucleotides in managing respiratory diseases', Chemico-Biological Interactions, vol. 385, pp. 110737-110737. de Couvreur, LA, Cobo, MJ, Kennedy, PJ & Ellis, JT 2023, 'Bibliometric analysis of parasite vaccine research from 1990 to 2019', Vaccine, vol. 41, no. 44, pp. 6468-6477. De, RG, Paudel, KR, Corrie, L, Mehndiratta, S, Patel, VK, Kumbhar, PS, Manjappa, AS, Disouza, J, Patravale, V, Gupta, G, Manandhar, B, Rajput, R, Robinson, AK, Reyes, R-J, Chakraborty, A, Chellappan, DK, Singh, SK, Oliver, BGG, Hansbro, PM & Dua, K 2023, 'Applications and advancements of nanoparticle-based drug delivery in alleviating lung cancer and chronic obstructive pulmonary disease.', Naunyn Schmiedebergs Arch Pharmacol. Lung cancer (LC) and chronic obstructive pulmonary disease (COPD) are among the leading causes of mortality worldwide. Cigarette smoking is among the main aetiologic factors for both ailments. These diseases share common pathogenetic mechanisms including inflammation, oxidative stress, and tissue remodelling. Current therapeutic approaches are limited by low efficacy and adverse effects. Consequentially, LC has a 5-year survival of < 20%, while COPD is incurable, underlining the necessity for innovative treatment strategies. Two promising emerging classes of therapy against these diseases include plant-derived molecules (phytoceuticals) and nucleic acid-based therapies. The clinical application of both is limited by issues including poor solubility, poor permeability, and, in the case of nucleic acids, susceptibility to enzymatic degradation, large size, and electrostatic charge density. Nanoparticle-based advanced drug delivery systems are currently being explored as flexible systems allowing to overcome these limitations. In this review, an updated summary of the most recent studies using nanoparticle-based advanced drug delivery systems to improve the delivery of nucleic acids and phytoceuticals for the treatment of LC and COPD is provided. This review highlights the enormous relevance of these delivery systems as tools that are set to facilitate the clinical application of novel categories of therapeutics with poor pharmacokinetic properties. This picture was generated with BioRender. De, RG, Paudel, KR, Liu, G, Agarwal, V, MacLoughlin, R, de, JAPT, Singh, SK, Adams, J, Nammi, S, Chellappan, DK, Oliver, BGG, Hansbro, PM & Dua, K 2023, 'Berberine-loaded engineered nanoparticles attenuate TGF-β-induced remodelling in human bronchial epithelial cells', Toxicology in Vitro, vol. 92, pp. 105660-105660. De, RG, Paudel, KR, Raju, AVSR, Malyla, V, Subramaniyan, V, Singh, SK, Panth, N, Gupta, G, Hansbro, PM, Chellappan, DK & Dua, K 2023, 'Involvement of osteopontin, EpCAM, estrogen receptor-alpha, and carbonic anhydrase IX protein in managing lung cancer via Berberine-loaded liquid crystalline nanoparticles', Pathology - Research and Practice, pp. 154971-154971. Deignan, LK, Pwa, KH, Loh, AAR, Rice, SA & McDougald, D 2023, 'The microbiomes of two Singaporean corals show site-specific differentiation and variability that correlates with the seasonal monsoons', Coral Reefs, vol. 42, no. 3, pp. 677-691. Devlin, C, Chadwick, S, Moret, S, Baechler, S, Raymond, J & Morelato, M 2023, 'The potential of using the forensic profiles of Australian fraudulent identity documents to assist intelligence-led policing', Australian Journal of Forensic Sciences, vol. 55, no. 6, pp. 720-730. Dhungana, A, Becchi, S, Leake, J, Morris, G, Avgan, N, Balleine, BW, Vissel, B & Bradfield, LA 2023, 'Goal-Directed Action Is Initially Impaired in a hAPP-J20 Mouse Model of Alzheimer’s Disease', eneuro, vol. 10, no. 2, pp. ENEURO.0363-22.2023. Dickson, K-A, Field, N, Blackman, T, Ma, Y, Xie, T, Kurangil, E, Idrees, S, Rathnayake, SNH, Mahbub, RM, Faiz, A & Marsh, DJ 2023, 'CRISPR single base-editing: in silico predictions to variant clonal cell lines', Human Molecular Genetics, vol. 32, no. 17, pp. 2704-2716. Dilernia, NJ, Camp, EF, Bartels, N & Suggett, DJ 2023, 'Contrasting the thermal performance of cultured coral endosymbiont photo-physiology', Journal of Experimental Marine Biology and Ecology, vol. 561, pp. 151865-151865. Ding, Y, Zhang, S, Li, J, Sun, Y, Yin, B, Li, H, Ma, Y, Wang, Z, Ge, H, Su, D & Ma, T 2023, 'Enhanced Elastic Migration of Magnesium Cations in alpha‐Manganese Dioxide Tunnels Locally Tuned by Aluminium Substitution', Advanced Functional Materials, vol. 33, no. 2, pp. 2210519-2210519. Doane, MP, Ostrowski, M, Brown, M, Bramucci, A, Bodrossy, L, van, DKJ, Bissett, A, Steinberg, P, Doblin, MA & Seymour, J 2023, 'Defining marine bacterioplankton community assembly rules by contrasting the importance of environmental determinants and biotic interactions.', Environ Microbiol, vol. 25, no. 6, pp. 1084-1098. Bacterioplankton communities govern marine productivity and biogeochemical cycling, yet drivers of bacterioplankton assembly remain unclear. Here, we contrast the relative contribution of deterministic processes (environmental factors and biotic interactions) in driving temporal dynamics of bacterioplankton diversity at three different oceanographic time series locations, spanning 15° of latitude, which are each characterized by different environmental conditions and varying degrees of seasonality. Monthly surface samples (5.5 years) were analysed using 16S rRNA amplicon sequencing. The high- and mid-latitude sites of Maria Island and Port Hacking were characterized by high and intermediate levels of environmental heterogeneity, respectively, with both alpha diversity (72%; 24% of total variation) and beta diversity (32%; 30%) patterns within bacterioplankton assemblages explained by day length, ammonium, and mixed layer depth. In contrast, North Stradbroke Island, a sub-tropical location where environmental conditions are less variable, interspecific interactions were of increased importance in structuring bacterioplankton diversity (alpha: 33%; beta: 26%) with environment only contributing 11% and 13% to predicting diversity, respectively. Our results demonstrate that bacterioplankton diversity is the result of both deterministic environmental and biotic processes and that the importance of these different deterministic processes varies, potential in response to environmental heterogeneity. Dong, H, Qi, S, Wang, L, Chen, X, Xiao, Y, Wang, Y, Sun, B, Wang, G & Chen, S 2023, 'Conductive Polymer Coated Layered Double Hydroxide as a Novel Sulfur Reservoir for Flexible Lithium‐Sulfur Batteries', Small, vol. 19, no. 30. Donovan, C, Barnes, JL & Kim, RY 2023, 'Back to the Eosinophil: Resolvin Spatiotemporal Regulation', American Journal of Respiratory Cell and Molecular Biology, vol. 69, no. 6, pp. 608-609. DOOLEY, AH & JIN, JIE 2023, 'A non-singular version of the Oseledeč ergodic theorem', Ergodic Theory and Dynamical Systems, vol. 43, no. 3, pp. 873-886. Doré, H, Guyet, U, Leconte, J, Farrant, GK, Alric, B, Ratin, M, Ostrowski, M, Ferrieux, M, Brillet-Guéguen, L, Hoebeke, M, Siltanen, J, Le Corguillé, G, Corre, E, Wincker, P, Scanlan, DJ, Eveillard, D, Partensky, F & Garczarek, L 2023, 'Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies', The ISME Journal, vol. 17, no. 5, pp. 720-732. Dower, A, Mulcahy, M, Maharaj, M, Chen, H, Lim, CED, Li, Y & Sheridan, M 2023, 'Surgical Decompression for Malignant Cerebral Edema After Ischemic Stroke: Cochrane Review.', Stroke, vol. 54, no. 12, pp. e500-e502. Dowling, NA, Wilson, JR, Cope, JM, Dougherty, DT, Lomonico, S, Revenga, C, Snouffer, BJ, Salinas, NG, Torres‐Cañete, F, Chick, RC, Fowler, AM & Parma, AM 2023, 'The Drew-Smythe, JJ, Davila, YC, McLean, CM, Hingee, MC, Murray, ML, Webb, JK, Krix, DW & Murray, BR 2023, 'Community perceptions of ecosystem services and disservices linked to urban tree plantings', Urban Forestry & Urban Greening, vol. 82, pp. 127870-127870. Dupouy, DLM, Bolton, MS, Berry, TP, Raymond, J & Meakin, GE 2023, 'Saw marks in bone: A preliminary empirical study to inform decision making and best practice', Forensic Science International, vol. 353, pp. 111857-111857. Dupuy, A, Aponte-Santamaría, C, Yeheskel, A, Hortle, E, Oehlers, SH, Gräter, F, Hogg, PJ, Passam, FH & Chiu, J 2023, 'Mechano-Redox Control of Mac-1 De-Adhesion by PDI Promotes Directional Movement Under Flow', Circulation Research, vol. 132, no. 9. Dureja, H, solanki, N, Gupta, G, Chellappan, DK, Singh, SK, Gulati, M, Paudel, KR, Hansbro, PM, Dua, K, Bhan, S & saini, M 2023, 'Boswellic Acids: A Critical Appraisal of Their Therapeutic and Nutritional Benefits in Chronic Inflammatory Diseases', Endocrine, Metabolic & Immune Disorders - Drug Targets, vol. 23. Egwunye, J, Cardoso, BR, Braat, S, Ha, T, Hanieh, S, Hare, D, Duan, AX, Doronila, A, Tran, T, Tuan, T, Fisher, J & Biggs, B-A 2023, 'The role of fingernail selenium in the association between arsenic, lead and mercury and child development in rural Vietnam: a cross-sectional analysis', British Journal of Nutrition, vol. 129, no. 9, pp. 1589-1597. Elankumuran, P, Browning, GF, Marenda, MS, Kidsley, A, Osman, M, Haenni, M, Johnson, JR, Trott, DJ, Reid, CJ & Djordjevic, SP 2023, 'Identification of genes influencing the evolution of Escherichia coli ST372 in dogs and humans.', Microb Genom, vol. 9, no. 2, p. mgen000930. ST372 are widely reported as the major Escherichia coli sequence type in dogs globally. They are also a sporadic cause of extraintestinal infections in humans. Despite this, it is unknown whether ST372 strains from dogs and humans represent shared or distinct populations. Furthermore, little is known about genomic traits that might explain the prominence of ST372 in dogs or presence in humans. To address this, we applied a variety of bioinformatics analyses to a global collection of 407 ST372 E. coli whole-genome sequences to characterize their epidemiological features, population structure and associated accessory genomes. We confirm that dogs are the dominant host of ST372 and that clusters within the population structure exhibit distinctive O:H types. One phylogenetic cluster, 'cluster M', comprised almost half of the sequences and showed the divergence of two human-restricted clades that carried different O:H types to the remainder of the cluster. We also present evidence supporting transmission between dogs and humans within different clusters of the phylogeny, including M. We show that multiple acquisitions of the pdu propanediol utilization operon have occurred in clusters dominated by isolates of canine source, possibly linked to diet, whereas loss of the pdu operon and acquisition of K antigen virulence genes characterize human-restricted lineages. Elder, M & Piggott, A 2023, 'On groups presented by inverse-closed finite confluent length-reducing rewriting systems', Journal of Algebra, vol. 627, pp. 106-131. Elder, M, Piggott, A & Townsend, K 2023, 'On k-geodetic graphs and groups', International Journal of Algebra and Computation, vol. 33, no. 06, pp. 1169-1182. Elder, M, Piggott, A & Townsend, K 2023, 'On k-geodetic graphs and groups', International Journal of Algebra and Computation. We call a graph k-geodetic, for some k≥1, if it is connected and between any two vertices there are at most k geodesics. It is shown that any hyperbolic group with a k-geodetic Cayley graph is virtually-free. Furthermore, in such a group the centraliser of any infinite order element is an infinite cyclic group. These results were known previously only in the case that k=1. A key tool used to develop the theorem is a new graph theoretic result concerning ``ladder-like structures'' in a k-geodetic graph. Ellis, JT & Reichel, MP 2023, 'Twitter trends in #Parasitology determined by text mining and topic modelling', Current Research in Parasitology & Vector-Borne Diseases, vol. 4, pp. 100138-100138. Elrahoumi, R, Zhu, L, Wagner, E, Maudez, W, Benvenuti, G, Phillips, MR & Ton-That, C 2023, 'Doping-induced Ti3+ state and oxygen vacancies in TiO2: A single-chip combinatorial investigation', Materials Chemistry and Physics, vol. 308, pp. 128283-128283. Fairley, LH, Das, S, Dharwal, V, Amorim, N, Hegarty, KJ, Wadhwa, R, Mounika, G & Hansbro, PM 2023, 'Mitochondria-Targeted Antioxidants as a Therapeutic Strategy for Chronic Obstructive Pulmonary Disease.', Antioxidants (Basel), vol. 12, no. 4, pp. 973-973. Oxidative stress is a major hallmark of COPD, contributing to inflammatory signaling, corticosteroid resistance, DNA damage, and accelerated lung aging and cellular senescence. Evidence suggests that oxidative damage is not solely due to exogenous exposure to inhaled irritants, but also endogenous sources of oxidants in the form of reactive oxygen species (ROS). Mitochondria, the major producers of ROS, exhibit impaired structure and function in COPD, resulting in reduced oxidative capacity and excessive ROS production. Antioxidants have been shown to protect against ROS-induced oxidative damage in COPD, by reducing ROS levels, reducing inflammation, and protecting against the development of emphysema. However, currently available antioxidants are not routinely used in the management of COPD, suggesting the need for more effective antioxidant agents. In recent years, a number of mitochondria-targeted antioxidant (MTA) compounds have been developed that are capable of crossing the mitochondria lipid bilayer, offering a more targeted approach to reducing ROS at its source. In particular, MTAs have been shown to illicit greater protective effects compared to non-targeted, cellular antioxidants by further reducing apoptosis and offering greater protection against mtDNA damage, suggesting they are promising therapeutic agents for the treatment of COPD. Here, we review evidence for the therapeutic potential of MTAs as a treatment for chronic lung disease and discuss current challenges and future directions. Fairley, LH, Lai, KO, Wong, JH, Chong, WJ, Vincent, AS, D’Agostino, G, Wu, X, Naik, RR, Jayaraman, A, Langley, SR, Ruedl, C & Barron, AM 2023, 'Mitochondrial control of microglial phagocytosis by the translocator protein and hexokinase 2 in Alzheimer’s disease', Proceedings of the National Academy of Sciences, vol. 120, no. 8. Faiz, A, Mahbub, RM, Boedijono, FS, Tomassen, MI, Kooistra, W, Timens, W, Nawijn, M, Hansbro, PM, Johansen, MD, Pouwels, SD, Heijink, IH, Massip, F, de, BMS, Schwarz, RF, Adcock, IM, Chung, KF, van, DDA, Hiemstra, PS, Goulaouic, H, Xing, H, Abdulai, R, de, RE, Cunoosamy, D, Harel, S, Lederer, D, Nivens, MC, Wark, PA, Kerstjens, HAM, Hylkema, MN, Brandsma, C-A, van, DBM & Cambridge, LCEDP 2023, 'IL-33 Expression Is Lower in Current Smokers at Both Transcriptomic and Protein Level.', Am J Respir Crit Care Med. INTRODUCTION: IL-33 is a pro-inflammatory cytokine thought to play a role in the pathogenesis of asthma and COPD. A recent clinical trial using the anti-IL33 antibody showed a reduction in exacerbation and improved lung function in ex-smokers but not current smokers with COPD. In this study, we aimed to understand the effects of smoking status on IL-33. METHODS: We investigated the association of smoking status with the level of gene expression of IL33 in the airways in eight independent transcriptomic studies of lung airways. Additionally, we performed western blot and immunohistochemistry for IL-33 in lung tissue to assess protein levels. RESULTS: Across the bulk RNA-sequencing datasets, IL-33 gene expression and its signaling pathway were significantly lower in current- compared to ex- or never-smokers and increased upon smoking cessation (p<0.05). Single-cell sequencing showed that IL-33 is predominantly expressed in resting basal epithelial cells and decreases during the differentiation process triggered by smoke exposure. We also found a higher transitioning of this cellular sub-population into a more differentiated cell type during chronic smoking, potentially driving the reduction of IL-33. Protein analysis demonstrated lower IL-33 levels in lung tissue from COPD current- compared to ex-smokers and a lower proportion of IL-33 positive basal cells in current versus ex-smoking controls. CONCLUSION: We provide strong evidence that cigarette smoke leads to an overall reduction in IL33 expression in both transcriptomic and protein level and this may be due to the decrease in resting basal cells. Together, these findings may explain the clinical observation that a recent antibody-based anti-IL-33 treatment is more effective in ex- than current smokers with COPD. This article is open access and distributed under the terms of the Creative Commons Attribution Non-Commercial No Derivatives License 4.0 (http://creativecommons.org/licenses/by-nc-nd/4.0/). Faiz, A, Pavlidis, S, Kuo, C-H, Rowe, A, Hiemstra, PS, Timens, W, Berg, M, Wisman, M, Guo, Y-K, Djukanović, R, Sterk, P, Meyer, KB, Nawijn, MC, Adcock, I, Chung, KF & van den Berge, M 2023, 'Th2 high and mast cell gene signatures are associated with corticosteroid sensitivity in COPD', Thorax, vol. 78, no. 4, pp. 335-343. Fang, G, Chen, Y, Lu, H & Jin, D 2023, 'Advances in Spheroids and Organoids on a Chip', Advanced Functional Materials, vol. 33, no. 19, pp. 2215043-2215043. Fang, H, Chen, C-H, Hwang, F-J, Chang, C-C & Chang, C-C 2023, 'Metro Station functional clustering and dual-view recurrent graph convolutional network for metro passenger flow prediction', Expert Systems with Applications, pp. 122550-122550. Fang, H, Liu, Y, Chen, C-H & Hwang, F-J 2023, 'Travel Time Prediction Method Based on Spatial-Feature-based Hierarchical Clustering and Deep Multi-input Gated Recurrent Unit', ACM Transactions on Sensor Networks, vol. 19, no. 2, pp. 1-21. Farahmandi, F, Srivastava, A, Di Natale, G & Tehranipoor, M 2023, 'Introduction to the Special Issue on CAD for Security: Pre-silicon Security Sign-off Solutions Through Design Cycle', ACM Journal on Emerging Technologies in Computing Systems, vol. 19, no. 1, pp. 1-4. Farahmandjou, M, Lai, W, Safaei, J, Wang, S, Huang, Z, Marlton, F, Ruan, J, Sun, B, Gao, H, Ostrikov, KK, Notten, PHL & Wang, G 2023, 'Boosting the Electrochemical Performance of Lithium‐Rich Cathodes by Oxygen Vacancy Engineering', Batteries & Supercaps, vol. 6, no. 7. Fares, M, Wu, X, McNaughton, DA, Gilchrist, AM, Lewis, W, Keller, PA, Arias-Betancur, A, Fontova, P, Pérez-Tomás, R & Gale, PA 2023, 'A potent fluorescent transmembrane HCl transporter perturbs cellular pH and promotes cancer cell death.', Org Biomol Chem, vol. 21, no. 12, pp. 2509-2515. A series of fluorescent coumarin bis-ureas 1-4 have been synthesised, and their anion transport properties studied. The compounds function as highly potent HCl co-transport agents in lipid bilayer membranes. Single crystal X-ray diffraction of compound 1 showed antiparallel stacking of the coumarin rings, stabilised by hydrogen bonds. Binding studies, using 1H-NMR titration, showed moderate chloride binding in DMSO-d6/0.5% with 1 : 1 binding mode (for transporter 1) and 1 : 2 binding mode (host: guest, for transporters 2-4). We examined the cytotoxicity of compounds 1-4 against three cancer cell lines, lung adenocarcinoma (A549), colon adenocarcinoma (SW620) and breast adenocarcinoma (MCF-7). The most lipophilic transporter, 4 showed a cytotoxic effect against all three cancer cell lines. Cellular fluorescence studies showed compound 4 crossed the plasma membrane and localised in the cytoplasm after a short time. Interestingly, compound 4, lacking any lysosome targeting groups, was co-localised with LysoTracker Red at 4 and 8 h in the lysosome. Cellular anion transport of compound 4 was assessed by measuring intracellular pH and showed a decrease in cellular pH, which may be due to the capacity of transporter 4 to co-transport HCl across biological membranes, as evidenced by the liposomal studies. Feng, Z, Zhu, R, Chen, F, Zhu, Y, Zhou, Y, Guan, P, Kuo, Y-C, Fan, J, Wan, T, Li, M, Han, Z, Su, D & Chu, D 2023, 'Recent advances in water-induced electricity generation based on 2D materials: A review', Journal of Materials Research, vol. 38, no. 7, pp. 1757-1779. Fergusson, K & Platen, E 2023, 'Less-expensive long-term annuities linked to mortality, cash and equity', Annals of Actuarial Science, vol. 17, no. 1, pp. 170-207. Fiedler, S, Ton-That, C & Phillips, MR 2023, 'Defect-free ZnO nanorods with high angular distribution for enhanced excitonic emission', Journal of Materials Research, vol. 38, no. 8, pp. 2145-2155. Firme, GF, Hughes, DJ, Laiolo, L, Roughan, M, Suthers, IM & Doblin, MA 2023, 'Contrasting phytoplankton composition and primary productivity in multiple mesoscale eddies along the East Australian coast', Deep Sea Research Part I: Oceanographic Research Papers, vol. 193, pp. 103952-103952. Fisher, NL, Halsey, KH, Suggett, DJ, Pombrol, M, Ralph, PJ, Lutz, A, Sogin, EM, Raina, J-B & Matthews, JL 2023, 'Light-dependent metabolic shifts in the model diatom Thalassiosira pseudonana', Algal Research, vol. 74, pp. 103172-103172. Fitschen, LJ, Newing, TP, Johnston, NP, Bell, CE & Tolun, G 2023, 'Half a Century After Their Discovery: Structural Insights into Exonuclease and Annealase Proteins Catalyzing Recombineering', Engineering Microbiology, pp. 100120-100120. Fleming, CL, Golzan, M, Gunawan, C & McGrath, KC 2023, 'Systematic and Bibliometric Analysis of Magnetite Nanoparticles and Their Applications in (Biomedical) Research', Global Challenges, vol. 7, no. 1, pp. 2200009-2200009. Fowler, AM, Dowling, NA, Lyle, JM, Alós, J, Anderson, LE, Cooke, SJ, Danylchuk, AJ, Ferter, K, Folpp, H, Hutt, C, Hyder, K, Lew, DK, Lowry, MB, Lynch, TP, Meadows, N, Mugerza, E, Nedreaas, K, Garrone‐Neto, D, Ochwada‐Doyle, FA, Potts, W, Records, D, Steinback, S, Strehlow, HV, Tracey, SR, Travis, MD, Tsuboi, J, Vølstad, JH & Chick, RC 2023, 'Toward sustainable harvest strategies for marine fisheries that include recreational fishing', Fish and Fisheries, vol. 24, no. 6, pp. 1003-1019. Froehlich, CYM, Klanten, OS, Hing, ML, Dowton, M & Wong, MYL 2023, 'Delayed recovery and host specialization may spell disaster for coral‐fish mutualism', Ecology and Evolution, vol. 13, no. 6. Fu, S, Shi, W, Luo, T, He, Y, Zhou, L, Yang, J, Yang, Z, Liu, J, Liu, X, Guo, Z, Yang, C, Liu, C, Huang, Z-L, Ries, J, Zhang, M, Xi, P, Jin, D & Li, Y 2023, 'Field-dependent deep learning enables high-throughput whole-cell 3D super-resolution imaging', Nature Methods, vol. 20, no. 3, pp. 459-468. Gale, A, Scognamiglio, D, Zhigulin, I, Whitefield, B, Kianinia, M, Aharonovich, I & Toth, M 2023, 'Manipulating the Charge State of Spin Defects in Hexagonal Boron Nitride', Nano Letters, vol. 23, no. 13, pp. 6141-6147. Gallagher, CI, Frangos, ZJ, Sheipouri, D, Shimmon, S, Duman, M-N, Jayakumar, S, Cioffi, CL, Rawling, T & Vandenberg, RJ 2023, 'Novel Phenylene Lipids That Are Positive Allosteric Modulators of Glycine Receptors and Inhibitors of Glycine Transporter 2', ACS Chemical Neuroscience, vol. 14, no. 15, pp. 2634-2647. GBD, CRDC 2023, 'Global burden of chronic respiratory diseases and risk factors, 1990-2019: an update from the Global Burden of Disease Study 2019.', EClinicalMedicine, vol. 59, pp. 101936-101936. BACKGROUND: Updated data on chronic respiratory diseases (CRDs) are vital in their prevention, control, and treatment in the path to achieving the third UN Sustainable Development Goals (SDGs), a one-third reduction in premature mortality from non-communicable diseases by 2030. We provided global, regional, and national estimates of the burden of CRDs and their attributable risks from 1990 to 2019. METHODS: Using data from the Global Burden of Diseases, Injuries, and Risk Factors Study (GBD) 2019, we estimated mortality, years lived with disability, years of life lost, disability-adjusted life years (DALYs), prevalence, and incidence of CRDs, i.e. chronic obstructive pulmonary disease (COPD), asthma, pneumoconiosis, interstitial lung disease and pulmonary sarcoidosis, and other CRDs, from 1990 to 2019 by sex, age, region, and Socio-demographic Index (SDI) in 204 countries and territories. Deaths and DALYs from CRDs attributable to each risk factor were estimated according to relative risks, risk exposure, and the theoretical minimum risk exposure level input. FINDINGS: In 2019, CRDs were the third leading cause of death responsible for 4.0 million deaths (95% uncertainty interval 3.6-4.3) with a prevalence of 454.6 million cases (417.4-499.1) globally. While the total deaths and prevalence of CRDs have increased by 28.5% and 39.8%, the age-standardised rates have dropped by 41.7% and 16.9% from 1990 to 2019, respectively. COPD, with 212.3 million (200.4-225.1) prevalent cases, was the primary cause of deaths from CRDs, accounting for 3.3 million (2.9-3.6) deaths. With 262.4 million (224.1-309.5) prevalent cases, asthma had the highest prevalence among CRDs. The age-standardised rates of all burden measures of COPD, asthma, and pneumoconiosis have reduced globally from 1990 to 2019. Nevertheless, the age-standardised rates of incidence and prevalence of interstitial lung disease and pulmonary sarcoidosis have increased throughout this period. Low- and lo... Gera, T, Chen, L, Eisfeld, A, Reimers, JR, Taffet, EJ & Raccah, DIGB 2023, 'Simulating optical linear absorption for mesoscale molecular aggregates: An adaptive hierarchy of pure states approach', The Journal of Chemical Physics, vol. 158, no. 17. Gertner, DS, Bishop, DP & Padula, MP 2023, 'Optimization of chromatographic buffer conditions for the simultaneous analysis of phosphatidylinositol and phosphatidylinositol phosphate species in canola', Journal of Separation Science, vol. 46, no. 16. Gertner, DS, Violi, JP, Bishop, DP & Padula, MP 2023, 'Lipid Spectrum Generator: A Simple Script for the Generation of Accurate In Silico Lipid Fragmentation Spectra', Analytical Chemistry, vol. 95, no. 5, pp. 2909-2916. Ghorbanpour, S, Richards, C, Cole, L, McGrath, K, Warkiani, ME & McClements, L 2023, 'New 3D multicellular models of placental tissue for studying important mechanisms of preeclampsia', Placenta, vol. 140, pp. e6-e6. Ghorbanpour, SM, Richards, C, Pienaar, D, Sesperez, K, Aboulkheyr Es., H, Nikolic, VN, Karadzov Orlic, N, Mikovic, Z, Stefanovic, M, Cakic, Z, Alqudah, A, Cole, L, Gorrie, C, McGrath, K, Kavurma, MM, Ebrahimi Warkiani, M & McClements, L 2023, 'A placenta-on-a-chip model to determine the regulation of FKBPL and galectin-3 in preeclampsia', Cellular and Molecular Life Sciences, vol. 80, no. 2. Gilchrist, AM, Wu, X, Hawkins, BA, Hibbs, DE & Gale, PA 2023, 'Fluorinated tetrapodal anion transporters', iScience, vol. 26, no. 2, pp. 105988-105988. Gladding, JM, Bradfield, LA & Kendig, MD 2023, 'Diet and obesity effects on cue-driven food-seeking: insights from studies of Pavlovian-instrumental transfer in rodents and humans.', Front Behav Neurosci, vol. 17, p. 1199887. Our modern environment is said to be obesogenic, promoting the consumption of calorically dense foods and reducing energy expenditure. One factor thought to drive excess energy intake is the abundance of cues signaling the availability of highly palatable foods. Indeed, these cues exert powerful influences over food-related decision-making. Although obesity is associated with changes to several cognitive domains, the specific role of cues in producing this shift and on decision-making more generally, remains poorly understood. Here we review the literature examining how obesity and palatable diets affect the ability of Pavlovian cues to influence instrumental food-seeking behaviors by examining rodent and human studies incorporating Pavlovian-instrumental transfer (PIT) protocols. There are two types of PIT: (a) general PIT that tests whether cues can energize actions elicited in the pursuit of food generally, and (b) specific PIT which tests whether cues can elicit an action that earns a specific food outcome when faced with a choice. Both types of PIT have been shown to be vulnerable to alterations as a result of changes to diet and obesity. However, effects appear to be driven less by increases in body fat and more by palatable diet exposure per se. We discuss the limitations and implications of the current findings. The challenges for future research are to uncover the mechanisms underlying these alterations to PIT, which appear unrelated to excess weight itself, and to better model the complex determinants of food choice in humans. Gladding, JM, Lingawi, NW, Leung, BK, Kendig, MD, Chieng, BC & Laurent, V 2023, 'High fat diet allows food-predictive stimuli to energize action performance in the absence of hunger, without distorting insulin signaling on accumbal cholinergic interneurons', Appetite, vol. 188, pp. 106769-106769. Gloag, L, Poerwoprajitno, AR, Cheong, S, Ramadhan, ZR, Adschiri, T, Gooding, JJ & Tilley, RD 2023, 'Synthesis of hierarchical metal nanostructures with high electrocatalytic surface areas', Science Advances, vol. 9, no. 2. Goh, YF, Røder, HL, Chan, SH, Ismail, MH, Madsen, JS, Lee, KWK, Sørensen, SJ, Givskov, M, Burmølle, M, Rice, SA & McDougald, D 2023, 'Associational Resistance to Predation by Protists in a Mixed Species Biofilm.', Appl Environ Microbiol, vol. 89, no. 2, p. e0174122. Mixed species biofilms exhibit increased tolerance to numerous stresses compared to single species biofilms. The aim of this study was to examine the effect of grazing by the heterotrophic protist, Tetrahymena pyriformis, on a mixed species biofilm consisting of Pseudomonas aeruginosa, Pseudomonas protegens, and Klebsiella pneumoniae. Protozoan grazing significantly reduced the single species K. pneumoniae biofilm, and the single species P. protegens biofilm was also sensitive to grazing. In contrast, P. aeruginosa biofilms were resistant to predation. This resistance protected the otherwise sensitive members of the mixed species biofilm consortium. Rhamnolipids produced by P. aeruginosa were shown to be the primary toxic factor for T. pyriformis. However, a rhamnolipid-deficient mutant of P. aeruginosa (P. aeruginosa ΔrhlAB) maintained grazing resistance in the biofilm, suggesting the presence of at least one additional protective mechanism. P. aeruginosa with a deleted gene encoding the type III secretion system also resisted grazing. A transposon library was generated in the ΔrhlAB mutant to identify the additional factor involved in community biofilm protection. Results indicated that the Pseudomonas Quinolone Signal (PQS), a quorum sensing signaling molecule, was likely responsible for this effect. We confirmed this observation by showing that double mutants of ΔrhlAB and genes in the PQS biosynthetic operon lost grazing protection. We also showed that PQS was directly toxic to T. pyriformis. This study demonstrates that residing in a mixed species biofilm can be an advantageous strategy for grazing sensitive bacterial species, as P. aeruginosa confers community protection from protozoan grazing through multiple mechanisms. IMPORTANCE Biofilms have been shown to protect bacterial cells from predation by protists. Biofilm studies have traditionally used single species systems, which have provided information on the mechanisms and regulation of biofi... Gondard, M, Lane, M, Barratt, J, Talundzic, E & Qvarnstrom, Y 2023, 'Simultaneous targeted amplicon deep sequencing and library preparation for a time and cost-effective universal parasite diagnostic sequencing approach.', Parasitol Res, vol. 122, no. 12, pp. 3243-3256. We recently described a targeted amplicon deep sequencing (TADS) strategy that utilizes a nested PCR targeting the 18S rDNA gene of blood-borne parasites. The assay facilitates selective digestion of host DNA by targeting enzyme restriction sites present in vertebrates but absent in parasites. This enriching of parasite-derived amplicon drastically reduces the proportion of host-derived reads during sequencing and results in the sensitive detection of several clinically important blood parasites including Plasmodium spp., Babesia spp., kinetoplastids, and filarial nematodes. Despite these promising results, high costs and the laborious nature of metagenomics sequencing are prohibitive to the routine use of this assay in most laboratories. We describe and evaluate a new metagenomic approach that utilizes a set of primers modified from our original assay that incorporates Illumina barcodes and adapters during the PCR steps. This modification makes amplicons immediately compatible with sequencing on the Illumina MiSeq platform, removing the need for a separate library preparation, which is expensive and time-consuming. We compared this modified assay to our previous nested TADS assay in terms of preparation speed, limit of detection (LOD), and cost. Our modifications reduced assay turnaround times from 7 to 5 days. The cost decreased from approximately $40 per sample to $11 per sample. The modified assay displayed comparable performance in the detection and differentiation of human-infecting Plasmodium spp., Babesia spp., kinetoplastids, and filarial nematodes in clinical samples. The LOD of this modified approach was determined for malaria parasites and remained similar to that previously reported for our earlier assay (0.58 Plasmodium falciparum parasites/µL of blood). These modifications markedly reduced costs and turnaround times, making the assay more amenable to routine diagnostic applications. Gong, X-W, Leigh, A, Guo, J-J, Fang, L-D & Hao, G-Y 2023, 'Sand dune shrub species prioritize hydraulic integrity over transpirational cooling during an experimental heatwave', Agricultural and Forest Meteorology, vol. 336, pp. 109483-109483. Goodswen, SJ, Kennedy, PJ & Ellis, JT 2023, 'A guide to current methodology and usage of reverse vaccinology towards in silico vaccine discovery.', FEMS Microbiol Rev, vol. 47, no. 2, p. fuad004. Reverse vaccinology (RV) was described at its inception in 2000 as an in silico process that starts from the genomic sequence of the pathogen and ends with a list of potential protein and/or peptide candidates to be experimentally validated for vaccine development. Twenty-two years later, this process has evolved from a few steps entailing a handful of bioinformatics tools to a multitude of steps with a plethora of tools. Other in silico related processes with overlapping workflow steps have also emerged with terms such as subtractive proteomics, computational vaccinology, and immunoinformatics. From the perspective of a new RV practitioner, determining the appropriate workflow steps and bioinformatics tools can be a time consuming and overwhelming task, given the number of choices. This review presents the current understanding of RV and its usage in the research community as determined by a comprehensive survey of scientific papers published in the last seven years. We believe the current mainstream workflow steps and tools presented here will be a valuable guideline for all researchers wanting to apply an up-to-date in silico vaccine discovery process. Goodswen, SJ, Kennedy, PJ & Ellis, JT 2023, 'A state-of-the-art methodology for high-throughput in silico vaccine discovery against protozoan parasites and exemplified with discovered candidates for Toxoplasma gondii.', Sci Rep, vol. 13, no. 1, p. 8243. Vaccine discovery against eukaryotic parasites is not trivial as highlighted by the limited number of known vaccines compared to the number of protozoal diseases that need one. Only three of 17 priority diseases have commercial vaccines. Live and attenuated vaccines have proved to be more effective than subunit vaccines but adversely pose more unacceptable risks. One promising approach for subunit vaccines is in silico vaccine discovery, which predicts protein vaccine candidates given thousands of target organism protein sequences. This approach, nonetheless, is an overarching concept with no standardised guidebook on implementation. No known subunit vaccines against protozoan parasites exist as a result of this approach, and consequently none to emulate. The study goal was to combine current in silico discovery knowledge specific to protozoan parasites and develop a workflow representing a state-of-the-art approach. This approach reflectively integrates a parasite's biology, a host's immune system defences, and importantly, bioinformatics programs needed to predict vaccine candidates. To demonstrate the workflow effectiveness, every Toxoplasma gondii protein was ranked in its capacity to provide long-term protective immunity. Although testing in animal models is required to validate these predictions, most of the top ranked candidates are supported by publications reinforcing our confidence in the approach. Goulden, T, Bodachivskyi, I, Padula, MP & Williams, DBG 2023, 'Concentrated ionic liquids for proteomics: Caveat emptor!', International Journal of Biological Macromolecules, vol. 253, pp. 127438-127438. Gow, I, Smith, N, Stark, D & Ellis, J 2023, 'Molecular Detection of Neglected Tropical Diseases: The Case for Automated Near–Point-of-Care Diagnosis of Leishmaniasis', The American Journal of Tropical Medicine and Hygiene, vol. 108, no. 1, pp. 2-6. Gray, JM, Leys, JF, Yang, X & Zhang, M 2023, 'Monitoring of sustainable land management using remotely sensed vegetation cover and variable tolerable soil erosion targets across New South Wales, Australia', Soil Use and Management, vol. 39, no. 2, pp. 849-866. Griebel, A, Boer, MM, Blackman, C, Choat, B, Ellsworth, DS, Madden, P, Medlyn, B, Resco de Dios, V, Wujeska‐Klause, A, Yebra, M, Younes Cardenas, N & Nolan, RH 2023, 'Specific leaf area and vapour pressure deficit control live fuel moisture content', Functional Ecology, vol. 37, no. 3, pp. 719-731. Gu, H, Lam, HC, Pham, TTT & Zinder, Y 2023, 'Heuristics and meta-heuristic to solve the ROADEF/EURO challenge 2020 maintenance planning problem', Journal of Heuristics, vol. 29, no. 1, pp. 139-175. Guan, P, Min, J, Chen, F, Zhang, S, Hu, L, Ma, Z, Han, Z, Zhou, L, Jia, H, Liu, Y, Sharma, N, Su, D, Hart, JN, Wan, T & Chu, D 2023, 'Enhancing the Electrochemical Properties of Nickel-Rich Cathode by Surface Coating with Defect-Rich Strontium Titanate', ACS Applied Materials & Interfaces, vol. 15, no. 24, pp. 29308-29320. Guan, P, Min, J, Chen, F, Zhang, S, Zhu, Y, Liu, C, Hu, Y, Wan, T, Li, M, Liu, Y, Su, D, Hart, JN, Li, Z & Chu, D 2023, 'Dual-modification of Ni-rich cathode materials through strontium titanate coating and thermal treatment', Journal of Colloid and Interface Science, vol. 652, pp. 1184-1196. Gull, N, Arshad, F, Naikoo, GA, Hassan, IU, Pedram, MZ, Ahmad, A, Aljabali, AAA, Mishra, V, Satija, S, Charbe, N, Negi, P, Goyal, R, Serrano-Aroca, Á, Al Zoubi, MS, El-Tanani, M & Tambuwala, MM 2023, 'Recent Advances in Anticancer Activity of Novel Plant Extracts and Compounds from Curcuma longa in Hepatocellular Carcinoma', Journal of Gastrointestinal Cancer, vol. 54, no. 2, pp. 368-390. Gunton, H, Fowler, AM, Miller, ME, Booth, DJ & Stewart, J 2023, 'The utility of otolith-based methods for discriminating stock structure of the fishery important monacanthid, Nelusetta ayraud, over an intermediate scale', Fisheries Research, vol. 264, pp. 106715-106715. Guo, C, Chen, C-H, Chang, C-C, Hwang, F-J & Chang, C-C 2023, 'De-Correlation Neural Network for Synchronous Implementation of Estimation and Secrecy', IEEE Communications Letters, vol. 27, no. 1, pp. 165-169. Guo, C, Chen, C-H, Hwang, F-J, Chang, C-C & Chang, C-C 2023, 'Fast Spatiotemporal Learning Framework for Traffic Flow Forecasting', IEEE Transactions on Intelligent Transportation Systems, vol. 24, no. 8, pp. 8606-8616. Guo, C, Chen, C-H, Hwang, F-J, Chang, C-C & Chang, C-C 2023, 'Multi-View Spatiotemporal Learning for Traffic Forecasting', Information Sciences, pp. 119868-119868. Haider, MN, Khan, AZ, Usman, M, Balakrishnan, D, Javed, MR, Malik, S, Liu, C-G, Mehmood, MA & Ashraf, GA 2023, 'Impact of seasons and wastewater cultivation on the biomass and biodiesel production by the Plectonema terebrans BERC10 as a candidate for a multiproduct algal biorefinery', Fuel, vol. 332, pp. 125987-125987. Cyanobacteria offer efficient resource recovery and biotransformation of the wastewater-derived nutrients into valuable bioproducts. However, to achieve commercial robustness, the cultivation potential of the strain must be evaluated under outdoor conditions. The present study evaluated the potential of a filamentous cyanobacterium Plectonema terebrans BERC10 for resource recovery, wastewater treatment, and biomass production for the whole year using an outdoor open-pond cultivation system. The seasonal and nutrient variations had a strong impact on metabolites and biomass production. Accordingly, the maximum biomass production of 1.9 g/L was produced during the summer season (34–42 °C) while 1.7 g/L, 1.554 g/L, and 1.526 g/L biomass was produced during spring, fall, and winter, respectively. The strain adjusted the pH of the wastewater from 7.5 to 11, offering contamination-free cultivation with easier floatation-based harvesting due to its filamentous nature. Besides, wastewater-based outdoor cultivation diverted the metabolic fluxes towards lipid biosynthesis where it accumulated 50–63 % lipids throughout the year. In addition, a maximum of 21 % carbohydrate content was observed during the summer season, while 9.2 %, 13.11 %, and 17 % were measured in the winter, spring, and fall seasons, respectively. The 16–27 % protein content was achieved throughout the year which was shown to be correlated with the varying nitrogen concentration during different seasons. The biomass produced during all four seasons was separately subjected to cascading processing to make the process cost-effective, and 60 % lipids and 25 % proteins were recovered while the residual biomass contained fermentable carbohydrates. Moreover, the strain showed a promising wastewater treatment potential by lowering the total nitrogen by 90 %, total phosphorus by 99 %, total dissolved solids by 70 %, COD by 80 %, and BOD by 85 %. In conclusion, it exhibited remarkable adaptability to the fluctuati... Haifer, C, Luu, LDW, Paramsothy, S, Borody, TJ, Leong, RW & Kaakoush, NO 2023, 'Microbial determinants of effective donors in faecal microbiota transplantation for UC', Gut, vol. 72, no. 1, pp. 90-100. Han, N, Zhang, W, Guo, W, Pan, H, Jiang, B, Xing, L, Tian, H, Wang, G, Zhang, X & Fransaer, J 2023, 'Designing Oxide Catalysts for Oxygen Electrocatalysis: Insights from Mechanism to Application', Nano-Micro Letters, vol. 15, no. 1. Han, W, Hu, J, Su, H, Zhang, Q, Sun, B & Fan, L 2023, 'Self-supported Ni2P nanoarrays as efficient electrocatalysts for oxygen evolution reaction and hydrogen evolution reaction', Materials Letters, vol. 351, pp. 134998-134998. Hanna, T, Chadwick, S & Moret, S 2023, 'Fingermark quality assessment, a transversal study of subjective quality scales', Forensic Science International, vol. 350, pp. 111783-111783. Hansbro, P 2023, 'Omics technologies to study virus infection and chronic lung diseases.', Respirology, vol. 28, no. 4, pp. 403-403. Harris, RJ, Bryant, C, Coleman, MA, Leigh, A, Briceño, VF, Arnold, PA & Nicotra, AB 2023, 'A novel and high‐throughput approach to assess photosynthetic thermal tolerance of kelp using chlorophyll α fluorometry', Journal of Phycology, vol. 59, no. 1, pp. 179-192. Hasoon, MF, Jarocki, VM, Mohammed, MH, Djordjevic, SP, Yip, HYE, Carr, M, Khabiri, A, Azari, AA, Amanollahi, R, Jozani, RJ, Carracher, B, Mollinger, J, Deutscher, AT, Hemmatzadeh, F & Trott, DJ 2023, 'Antimicrobial susceptibility and molecular characteristics of Mycoplasma bovis isolated from cases of bovine respiratory disease in Australian feedlot cattle', Veterinary Microbiology, vol. 283, pp. 109779-109779. Hassler, GW, Magee, AF, Zhang, Z, Baele, G, Lemey, P, Ji, X, Fourment, M & Suchard, MA 2023, 'Data Integration in Bayesian Phylogenetics', Annual Review of Statistics and Its Application, vol. 10, no. 1, pp. 353-377. Haydon, TD, Matthews, JL, Seymour, JR, Raina, J-B, Seymour, JE, Chartrand, K, Camp, EF & Suggett, DJ 2023, 'Metabolomic signatures of corals thriving across extreme reef habitats reveal strategies of heat stress tolerance', Proceedings of the Royal Society B: Biological Sciences, vol. 290, no. 1992. He, Q, Liu, DL, Wang, B, Cowie, A, Simmons, A, Waters, C, Li, L, Feng, P, Li, Y, Voil, PD, Huete, A & Yu, Q 2023, 'Modelling interactions between cowpea cover crops and residue retention in Australian dryland cropping systems under climate change', Agriculture, Ecosystems & Environment, vol. 353, pp. 108536-108536. Healey, AJ, Scholten, SC, Yang, T, Scott, JA, Abrahams, GJ, Robertson, IO, Hou, XF, Guo, YF, Rahman, S, Lu, Y, Kianinia, M, Aharonovich, I & Tetienne, J-P 2023, 'Quantum microscopy with van der Waals heterostructures', Nature Physics, vol. 19, no. 1, pp. 87-91. Heng, WS, Jadhav, SR, Ueland, M & Shellie, RA 2023, 'Rapid detection of Escherichia coli in dairy milk using static headspace-comprehensive two-dimensional gas chromatography', Analytical and Bioanalytical Chemistry, vol. 415, no. 13, pp. 2535-2545. Henry, JA, Szereday, S, Lynn, CK, Suggett, DJ, Camp, EF & Patterson, JT 2023, 'Using relative return‐on‐effort scoring to evaluate a novel coral nursery in Malaysia', Restoration Ecology, vol. 31, no. 3. Herdean, A, Hall, C, Hughes, DJ, Kuzhiumparambil, U, Diocaretz, BC & Ralph, PJ 2023, 'Temperature mapping of non-photochemical quenching in Chlorella vulgaris', Photosynthesis Research, vol. 155, no. 2, pp. 191-202. Hong, KS, Lim, H-J, Lee, DH, Bae, I-H, Jeong, K-Y, Becher, C, Kim, S & Aharonovich, I 2023, 'Toward the Realization of Single-Photon Sources for Radiometry Applications at Room Temperature', IEEE Transactions on Instrumentation and Measurement, vol. 72, pp. 1-7. Hoque, MM, Espinoza-Vergara, G & McDougald, D 2023, 'Protozoan predation as a driver of diversity and virulence in bacterial biofilms', FEMS Microbiology Reviews, vol. 47, no. 4. Hoque, MM, Noorian, P, Espinoza-Vergara, G, Adhikary, S, To, J, Rice, SA & McDougald, D 2023, 'Increased iron utilization and oxidative stress tolerance in a Vibrio cholerae flrA mutant confers resistance to amoeba predation', Applied and Environmental Microbiology, p. e0109523. Hossain, KR, Turkewitz, DR, Holt, SA, Le Brun, AP & Valenzuela, SM 2023, 'Sterol Structural Features’ Impact on the Spontaneous Membrane Insertion of CLIC1 into Artificial Lipid Membranes', Langmuir, vol. 39, no. 9, pp. 3286-3300. Howlett, L, Camp, EF, Edmondson, J, Hosp, R, Taylor, B, Coulthard, P & Suggett, DJ 2023, 'Active coral propagation outcomes on coral communities at high-value Great Barrier Reef tourism sites', Biological Conservation, vol. 279, pp. 109930-109930. Huang, X, Li, F, Wang, Y, Jia, X, Jia, N, Xiao, F, Sun, C, Fu, J, Chen, M, Cui, X, Qu, D, Wai Luu, LD, Tai, J & Li, J 2023, 'Multi-omics analysis reveals underlying host responses in pediatric respiratory syncytial virus pneumonia', iScience, vol. 26, no. 4, pp. 106329-106329. Huang, Y, Du, Z, Bao, G, Fang, G, Cappadona, M, McClements, L, Tuch, BE, Lu, H & Xu, X 2023, 'Smart Drug-Delivery System of Upconversion Nanoparticles Coated with Mesoporous Silica for Controlled Release.', Pharmaceutics, vol. 15, no. 1, pp. 89-89. Drug-delivery vehicles have garnered immense interest in recent years due to unparalleled progress made in material science and nanomedicine. However, the development of stimuli-responsive devices with controllable drug-release systems (DRSs) is still in its nascent stage. In this paper, we designed a two-way controlled drug-release system that can be promoted and prolonged, using the external stimulation of near-infrared light (NIR) and protein coating. A hierarchical nanostructure was fabricated using upconversion nanoparticles (UCNPs)-mesoporous silica as the core-shell structure with protein lysozyme coating. The mesoporous silica shell provides abundant pores for the loading of drug molecules and a specific type of photosensitive molecules. The morphology and the physical properties of the nanostructures were thoroughly characterized. The results exhibited the uniform core-shell nanostructures of ~four UCNPs encapsulated in one mesoporous silica nanoparticle. The core-shell nanoparticles were in the spherical shape with an average size of 200 nm, average surface area of 446.54 m2/g, and pore size of 4.6 nm. Using doxorubicin (DOX), a chemotherapy agent as the drug model, we demonstrated that a novel DRS with capacity of smart modulation to promote or inhibit the drug release under NIR light and protein coating, respectively. Further, we demonstrated the therapeutic effect of the designed DRSs using breast cancer cells. The reported novel controlled DRS with dual functionality could have a promising potential for chemotherapy treatment of solid cancers. Huang, Z, Farahmandjou, M, Marlton, F, Guo, X, Gao, H, Sun, B & Wang, G 2023, 'Surface and structure engineering of MXenes for rechargeable batteries beyond lithium', Journal of Materiomics. Huang, Z, Jaumaux, P, Sun, B, Guo, X, Zhou, D, Shanmukaraj, D, Armand, M, Rojo, T & Wang, G 2023, 'High-Energy Room-Temperature Sodium–Sulfur and Sodium–Selenium Batteries for Sustainable Energy Storage', Electrochemical Energy Reviews, vol. 6, no. 1. Huang, Z, Wang, S, Guo, X, Safaei, J, Lei, Y, Lai, W, Zhang, X, Sun, B, Shanmukaraj, D, Armand, M, Rojo, T & Wang, G 2023, 'A Hierarchical Hybrid MXenes Interlayer with Triple Function for Room‐Temperature Sodium‐Sulfur Batteries', Advanced Materials Technologies, vol. 8, no. 14. Idrees, S 2023, 'Expression of targets of the RNA-binding protein AUF-1 in human airway epithelium indicates its role in cellular senescence and inflammation', Frontiers in Immunology, vol. 14, p. 1192028. INTRODUCTION: The RNA-binding protein AU-rich-element factor-1 (AUF-1) participates to posttranscriptional regulation of genes involved in inflammation and cellular senescence, two pathogenic mechanisms of chronic obstructive pulmonary disease (COPD). Decreased AUF-1 expression was described in bronchiolar epithelium of COPD patients versus controls and in vitro cytokine- and cigarette smoke-challenged human airway epithelial cells, prompting the identification of epithelial AUF-1-targeted transcripts and function, and investigation on the mechanism of its loss. RESULTS: RNA immunoprecipitation-sequencing (RIP-Seq) identified, in the human airway epithelial cell line BEAS-2B, 494 AUF-1-bound mRNAs enriched in their 3'-untranslated regions for a Guanine-Cytosine (GC)-rich binding motif. AUF-1 association with selected transcripts and with a synthetic GC-rich motif were validated by biotin pulldown. AUF-1-targets' steady-state levels were equally affected by partial or near-total AUF-1 loss induced by cytomix (TNFα/IL1β/IFNγ/10 nM each) and siRNA, respectively, with differential transcript decay rates. Cytomix-mediated decrease in AUF-1 levels in BEAS-2B and primary human small-airways epithelium (HSAEC) was replicated by treatment with the senescence- inducer compound etoposide and associated with readouts of cell-cycle arrest, increase in lysosomal damage and senescence-associated secretory phenotype (SASP) factors, and with AUF-1 transfer in extracellular vesicles, detected by transmission electron microscopy and immunoblotting. Extensive in-silico and genome ontology analysis found, consistent with AUF-1 functions, enriched RIP-Seq-derived AUF-1-targets in COPD-related pathways involved in inflammation, senescence, gene regulation and also in the public SASP proteome atlas; AUF-1 target signature was also significantly represented in multiple transcriptomic COPD databases generated from primary HSAEC, from lung tissue and from single-cell RNA-sequenci... Idrees, S, Paudel, KR, Sadaf, T & Hansbro, P 2023, 'How different viruses perturb host cellular machinery via short linear motifs', EXCLI Journal : Experimental and Clinical Sciences, vol. 22, pp. 1113-1128. The virus interacts with its hosts by developing protein-protein interactions. Most viruses employ protein interactions to imitate the host protein: A viral protein with the same amino acid sequence or structure as the host protein attaches to the host protein's binding partner and interferes with the host protein's pathways. Being opportunistic, viruses have evolved to manipulate host cellular mechanisms by mimicking short linear motifs. In this review, we shed light on the current understanding of mimicry via short linear motifs and focus on viral mimicry by genetically different viral subtypes by providing recent examples of mimicry evidence and how high-throughput methods can be a reliable source to study SLiM-mediated viral mimicry. Ikram, M & Mahmud, MAP 2023, 'Advanced triboelectric nanogenerator-driven drug delivery systems for targeted therapies', Drug Delivery and Translational Research, vol. 13, no. 1, pp. 54-78. Ikram, M, Ilyas, B, Haider, A, Haider, J, Ul‐Hamid, A, Shahzadi, A, Goumri‐Said, S, Kanoun, MB, Nabgan, W & Mahmood, A 2023, 'Fabrication of La‐Doped MoS2 Nanosheets with Tuned Bandgap for Dye Degradation and Antimicrobial Activities, Experimental and Computational Investigations', Advanced Materials Interfaces, vol. 10, no. 14. Irga, P, Fleck, R, Wooster, E, Rojahn, J, Torpy, F & Irga, P 2023, 'Biosolar green roofs – achieving biodiversity outcomes and solar power on the same roof, at the same time', Research Matters Newsletter of the Australian Flora Foundation, vol. 38, pp. 2-8. Urban green spaces, such as parks and vegetation along roadsides, are readily recognisable examples of ecologically significant urban green areas. However, with growing human populations and limited space in cities, there is a rising trend for the adoption of space-efficient green solutions such as green roofs and green walls. While the ecological importance of residential and roadside vegetation is acknowledged in terms of supporting biodiversity, the impact of urban green roofs on biodiversity is still not well understood. Additionally, green roofs play a role in regulating urban ambient temperatures, thereby enhancing the efficiency of solar panels by creating favourable conditions for energy production. There is a compelling correlation between the performance of photovoltaic panels (PV) and the negative impacts of rising ambient temperatures in their vicinity. What may come as a surprise to some is that as surfaces of solar panels heat up beyond 25°C, panel efficiency decreases. Green roofs have the potential to lower ambient temperatures around solar panels through evapotranspiration, thereby maximising the power output of PV systems. Irga, P, Wooster, E, Torpy, F, Rojahn, J & Fleck, R 2023, 'A green roof or rooftop solar? You can combine them in a biosolar roof, boosting both biodiversity and power output'. Growing city populations and limited space are driving the adoption of green roofs and green walls covered with living plants. As well as boosting biodiversity, green roofs could play another unexpectedly valuable role by increasing the electricity output of solar panels.As solar panels heat up beyond 25℃, their efficiency decreases markedly. Green roofs moderate rooftop temperatures. So we wanted to find out: could green roofs help with the problem of heat reducing the output of solar panels?Our research compared a “biosolar” green roof – one that combines a solar system with a green roof – and a comparable conventional roof with an equivalent solar system. We measured the impacts on biodiversity and solar output, as well as how the plants coped with having panels installed above them.The green roof supported much more biodiversity, as one might expect. By reducing average maximum temperatures by about 8℃, it increased solar generation by as much as 107% during peak periods. And while some plant species outperformed others, the vegetation flourished. Ishida, H, John, U, Murray, SA, Bhattacharya, D & Chan, CX 2023, 'Developing model systems for dinoflagellates in the post‐genomic era', Journal of Phycology, vol. 59, no. 5, pp. 799-808. Jacobson, DK, Peterson, AC, Qvarnstrom, Y & Barratt, JLN 2023, 'Novel insights on the genetic population structure of human-infecting Cyclospora spp. and evidence for rapid subtype selection among isolates from the USA.', Curr Res Parasitol Vector Borne Dis, vol. 4, p. 100145. Human-infecting Cyclospora was recently characterized as three species, two of which (C. cayetanensis and C. ashfordi) are currently responsible for all known human infections in the USA, yet much remains unknown about the genetic structure within these two species. Here, we investigate Cyclospora genotyping data from 2018 through 2022 to ascertain if there are temporal patterns in the genetic structure of Cyclospora parasites that cause infections in US residents from year to year. First, we investigate three levels of genetic characterization: species, subpopulation, and strain, to elucidate annual trends in Cyclospora infections. Next, we determine if shifts in genetic diversity can be linked to any of the eight loci used in our Cyclospora genotyping approach. We observed fluctuations in the abundance of Cyclospora types at the species and subpopulation levels, but no significant temporal trends were identified; however, we found recurrent and sporadic strains within both C. ashfordi and C. cayetanensis. We also uncovered major shifts in the mitochondrial genotypes in both species, where there was a universal increase in abundance of a specific mitochondrial genotype that was relatively abundant in 2018 but reached near fixation (was observed in over 96% of isolates) in C. ashfordi by 2022. Similarly, this allele jumped from 29% to 82% relative abundance of isolates belonging to C. cayetanensis. Overall, our analysis uncovers previously unknown temporal-genetic patterns in US Cyclospora types from 2018 through 2022 and is an important step to presenting a clearer picture of the factors influencing cyclosporiasis outbreaks in the USA. Jain, SK, Syed, N, Balendhran, S, Abbas, SAT, Ako, RT, Low, MX, Lobo, C, Zavabeti, A, Murdoch, BJ, Gupta, G, Bhaskaran, M, Crozier, KB, Russo, SP, Daeneke, T & Walia, S 2023, 'Atomically Thin Gallium Nitride for High‐Performance Photodetection', Advanced Optical Materials, vol. 11, no. 15. Jang, A, Lee, J, Donahue, C, Coggin-Carr, D, Cummings, M, Trinh, K, Lee, MS, Wieland, S, Zaslawski, C, Prokop, L & Shin, JS 2023, 'Perspectives and Ideas to Advance Integrative Medicine and Healthcare: Proceedings of the 4th Annual Jaseng Academic Conference', Perspectives on Integrative Medicine, vol. 2, no. 3, pp. 190-194. Jaumaux, P, Wang, S, Zhao, S, Sun, B & Wang, G 2023, 'Electrolyte Solvation Structure Design for High Voltage Zinc‐Based Hybrid Batteries', ENERGY & ENVIRONMENTAL MATERIALS, vol. 6, no. 4. Jelocnik, M, White, RT, Clune, T, O’Connell, J, Foxwell, J, Hair, S, Besier, S, Tom, L, Phillips, N, Robbins, A, Bogema, D, Vaz, PK, Legione, AR, Jenkins, C & Jacobson, C 2023, 'Molecular characterisation of the Australian and New Zealand livestock Chlamydia pecorum strains confirms novel but clonal ST23 in association with ovine foetal loss', Veterinary Microbiology, vol. 283, pp. 109774-109774. Jha, SK, Imran, M, Jha, LA, Hasan, N, Panthi, VK, Paudel, KR, Almalki, WH, Mohammed, Y & Kesharwani, P 2023, 'Current progress in pharmacokinetic studies of vaccines: Impact of carrier, ADME and its modulation on immune responses', Environmental Research, vol. 236, pp. 116823-116823. Jiang, T, Li, X, Li, T, Lin, G, Liu, H, Jin, D & Jiang, L 2023, 'Ultra‐Fast Wetting of the Fresh Popcorn', Advanced Functional Materials, vol. 33, no. 14, pp. 2213036-2213036. Johnson, L, Lei, P, Waters, L, Padula, MP & Marks, DC 2023, 'Identification of platelet subpopulations in cryopreserved platelet components using multi-colour imaging flow cytometry.', Sci Rep, vol. 13, no. 1, p. 1221. Cryopreservation of platelets, at - 80 °C with 5-6% DMSO, results in externalisation of phosphatidylserine and the formation of extracellular vesicles (EVs), which may mediate their procoagulant function. The phenotypic features of procoagulant platelets overlap with other platelet subpopulations. The aim of this study was to define the phenotype of in vitro generated platelet subpopulations, and subsequently identify the subpopulations present in cryopreserved components. Fresh platelet components (n = 6 in each group) were either unstimulated as a source of resting platelets; or stimulated with thrombin and collagen to generate a mixture of aggregatory and procoagulant platelets; calcium ionophore (A23187) to generate procoagulant platelets; or ABT-737 to generate apoptotic platelets. Platelet components (n = 6) were cryopreserved with DMSO, thawed and resuspended in a unit of thawed plasma. Multi-colour panels of fluorescent antibodies and dyes were used to identify the features of subpopulations by imaging flow cytometry. A combination of annexin-V (AnnV), CD42b, and either PAC1 or CD62P was able to distinguish the four subpopulations. Cryopreserved platelets contained procoagulant platelets (AnnV+/PAC1-/CD42b+/CD62P+) and a novel population (AnnV+/PAC1-/CD42b+/CD62P-) that did not align with the phenotype of aggregatory (AnnV-/PAC1+/CD42b+/CD62P+) or apoptotic (AnnV+/PAC1-/CD42b-/CD62P-) subpopulations. These data suggests that the enhanced haemostatic potential of cryopreserved platelets may be due to the cryo-induced development of procoagulant platelets, and that additional subpopulations may exist. Johnston, NP, Piwczyński, M, Trzeciak, P, Walczak, K & Szpila, K 2023, 'Integration of mitogenomic and morphological data disentangles the systematics of Pollenia and establishes a revised phylogenetic hypothesis for the Polleniidae', Systematic Entomology, vol. 48, no. 2, pp. 296-315. Jones, C, Xavier, J, Vartabi Kashanian, S, Nguyen, M, Aharonovich, I & Vollmer, F 2023, 'Time-dependent Mandel Q parameter analysis for a hexagonal boron nitride single photon source', Optics Express, vol. 31, no. 6, pp. 10794-10794. JOSHUA, S, NASSIF, NT & SIMPSON, AM 2023, '903-P: Correlation of Gene Expression and Cellular Pathways in Insulin-Expressing Mouse Liver Cells Transduced with an Integrating Adeno-associated Viral Vector (AAV)', Diabetes, vol. 72, no. Supplement_1. Kang, JWM, Keay, KA, Kendig, MD, Corbit, LH & Mor, D 2023, 'Serotonin and Dopamine Show Different Response Profiles to Acute Stress in the Nucleus Accumbens and Medial Prefrontal Cortex of Rats with Neuropathic Pain.', Neurochem Res, vol. 48, no. 7, pp. 2265-2280. The ability to adaptively guide behaviour requires the integration of external information with internal motivational factors. Decision-making capabilities can be impaired by acute stress and is often exacerbated by chronic pain. Chronic neuropathic pain patients often present with cognitive dysfunction, including impaired decision-making. The mechanisms underlying these changes are not well understood but may include altered monoaminergic transmission in the brain. In this study we investigated the relationships between dopamine, serotonin, and their metabolites in key brain regions that regulate motivated behaviour and decision-making. The neurochemical profiles of the medial prefrontal cortex, orbital prefrontal cortex, and nucleus accumbens were analysed using HPLC in rats that received a chronic constriction injury (CCI) of the right sciatic nerve and an acute stress (15-min restraint), prior to an outcome devaluation task. CCI alone significantly decreased dopamine but not serotonin concentrations in the medial prefrontal cortex. By contrast, restraint stress acutely increased dopamine in the medial prefrontal cortex, and the nucleus accumbens; and increased serotonin in the medial prefrontal cortex 2 h later. The sustained dopaminergic and serotonergic responses to acute stress highlight the importance of an animal's ability to mount an effective coping response. In addition, these data suggest that the impact of nerve injury and acute stress on outcome-devaluation occurs independently of dopaminergic and serotonergic transmission in the medial prefrontal cortex, orbital prefrontal cortex and nucleus accumbens of rats. Kang, Y, Xu, J, Meng, L, Su, Y, Fang, H, Liu, J, Cheng, YY, Jiang, D, Nie, Y & Song, K 2023, '3D bioprinting of dECM/Gel/QCS/nHAp hybrid scaffolds laden with mesenchymal stem cell-derived exosomes to improve angiogenesis and osteogenesis', Biofabrication, vol. 15, no. 2, pp. 024103-024103. Kannaujiya, VK, De, RG, Paudel, KR, Manandhar, B, Chellappan, DK, Singh, SK, MacLoughlin, R, Gupta, G, Xenaki, D, Kumar, P, Hansbro, PM, Oliver, BGG, Wich, PR & Dua, K 2023, 'Anticancer activity of NFκB decoy oligonucleotide-loaded nanoparticles against human lung cancer', Journal of Drug Delivery Science and Technology, vol. 82, pp. 104328-104328. Kapellos, TS, Baßler, K, Fujii, W, Nalkurthi, C, Schaar, AC, Bonaguro, L, Pecht, T, Galvao, I, Agrawal, S, Saglam, A, Dudkin, E, Frishberg, A, de, DE, Horne, A, Donovan, C, Kim, RY, Gallego-Ortega, D, Gillett, TE, Ansari, M, Schulte-Schrepping, J, Offermann, N, Antignano, I, Sivri, B, Lu, W, Eapen, MS, van, UM, Osei-Sarpong, C, van, DBM, Donker, HC, Groen, HJM, Sohal, SS, Klein, J, Schreiber, T, Feißt, A, Yildirim, A, Schiller, HB, Nawijn, MC, Becker, M, Händler, K, Beyer, M, Capasso, M, Ulas, T, Hasenauer, J, Pizarro, C, Theis, FJ, Hansbro, PM, Skowasch, D & Schultze, JL 2023, 'Systemic alterations in neutrophils and their precursors in early-stage chronic obstructive pulmonary disease.', Cell Rep, vol. 42, no. 6, pp. 112525-112525. Systemic inflammation is established as part of late-stage severe lung disease, but molecular, functional, and phenotypic changes in peripheral immune cells in early disease stages remain ill defined. Chronic obstructive pulmonary disease (COPD) is a major respiratory disease characterized by small-airway inflammation, emphysema, and severe breathing difficulties. Using single-cell analyses we demonstrate that blood neutrophils are already increased in early-stage COPD, and changes in molecular and functional neutrophil states correlate with lung function decline. Assessing neutrophils and their bone marrow precursors in a murine cigarette smoke exposure model identified similar molecular changes in blood neutrophils and precursor populations that also occur in the blood and lung. Our study shows that systemic molecular alterations in neutrophils and their precursors are part of early-stage COPD, a finding to be further explored for potential therapeutic targets and biomarkers for early diagnosis and patient stratification. Kargi, C, Dehollain, JP, Sieberer, LM, Henriques, F, Olsacher, T, Hauke, P, Heyl, M, Zoller, P & Langford, NK 2023, 'Quantum Chaos and Universal Trotterisation Behaviours in Digital Quantum Simulations', Quantum. Keen, B, Cawley, A, Reedy, B, Noble, G, Loy, J & Fu, S 2023, '3-Methoxytyrosine as an indicator of dopaminergic manipulation in equine plasma', Journal of Chromatography B, vol. 1220, pp. 123652-123652. Kendig, MD, Hasebe, K, Tajaddini, A, Kaakoush, NO, Westbrook, RF & Morris, MJ 2023, 'The Benefits of Switching to a Healthy Diet on Metabolic, Cognitive, and Gut Microbiome Parameters Are Preserved in Adult Rat Offspring of Mothers Fed a High‐Fat, High‐Sugar Diet', Molecular Nutrition & Food Research, vol. 67, no. 1, pp. 2200318-2200318. Kendig, MD, Leigh, S, Hasebe, K, Kaakoush, NO, Westbrook, RF & Morris, MJ 2023, 'Obesogenic Diet Cycling Produces Graded Effects on Cognition and Microbiota Composition in Rats', Molecular Nutrition & Food Research, vol. 67, no. 12. Khan, F, Malik, S, Shahid, A, Siddiqui, AJ, Musharraf, SG, Zhu, H, Alkhattabi, NA, Gull, M & Mehmood, MA 2023, 'Characterization of a newly isolated cyanobacterium Trichocoleus desertorum BERC08 as a potential feedstock for the algal biorefinery', Biomass Conversion and Biorefinery, vol. 13, no. 6, pp. 5283-5294. Cyanobacteria have numerous biotechnological applications in the environment, industry, pharmaceutics, food, feed, and energy which is why future cascading biorefineries are believed to employ cyanobacteria as their feedstock. The present study evaluated the potential of a newly isolated cyanobacterium for its applications in the multiproduct biorefinery. Based on morphology and the gene sequence of 23S rRNA, the strain was identified as Trichocoleus desertorum. Various abiotic growth factors including light, pH, and nutrients were optimized to achieve enhanced biomass production using various wastewaters as low-cost growth media. Accordingly, a 2.24-fold to 6.97-fold higher biomass production (gL-1) and biomass productivity of 0.86 gL-1d-1 with a CO2 fixation rate of 1.576 gL-1d-1 was achieved when cultured in synthetic wastewater. Besides, the impact of wastewater cultivation was studied on the biosynthesis of valuable metabolites including proteins, carbohydrates, lipids, and pigments. Accordingly, the lipid content of the wastewater-cultivated strain was increased from 24 to 30%, and protein content was increased from 27 to 46%. The lipids were trans-esterified to biodiesel which was turned out to be good quality biodiesel, as revealed through GC-MS analysis. Additionally, the wastewater-cultivated strain produced 117.35 mgg-1 (11.73 % of the total dried biomass) of phycobilin in response to nutrient manipulation, where phycocyanin was shown to be the most prominent pigment with a yield of 94.7 mgg-1, which covered 80% of the total pigments. These remarkable features reflected the promising potential of this strain to be employed as a feedstock in the multiproduct biorefinery. Khan, K, Tareen, AK, Iqbal, M, Ye, Z, Xie, Z, Mahmood, A, Mahmood, N & Zhang, H 2023, 'Recent Progress in Emerging Novel MXenes Based Materials and their Fascinating Sensing Applications', Small, vol. 19, no. 19, pp. 2206147-2206147. Kim Duong, HT, Abdibastami, A, Gloag, L, Bongers, A, Shanehsazzadeh, S, Nelson, M, Cousins, A, Bayat, N, McCalmont, H, Lock, RB, Sulway, S, Biazick, J, Justin Gooding, J & Tilley, RD 2023, 'Small zinc doped iron oxide tracers for magnetic particle imaging', Journal of Magnetism and Magnetic Materials, vol. 587, pp. 171304-171304. Kim, JH, Ajani, PA, Murray, SA, Kang, S-M, Kim, S-H, Lim, HC, Teng, ST, Lim, PT & Park, BS 2023, 'Abiotic and biotic factors controlling sexual reproduction in populations of Pseudo-nitzschia pungens (Bacillariophyceae)', Harmful Algae, vol. 123, pp. 102392-102392. Kim, RY & Oliver, B 2023, 'Innate Immune Reprogramming in Chronic Obstructive Pulmonary Disease: New Mechanisms for Old Questions', American Journal of Respiratory Cell and Molecular Biology, vol. 68, no. 5, pp. 470-471. Kofler, JR, Labeeuw, L, Bates, H, Zavafer, A & Ralph, PJ 2023, 'Light map optimization via direct chlorophyll fluorescence imaging in algal photobioreactors', Algal Research, vol. 71, pp. 103022-103022. Kole, TM, Pouwels, SD, Bults, R, Ketelaar, ME, Guryev, V, Koll, L, Kerstjens, HAM, Nawijn, MC, Faiz, A & van den Berge, M 2023, 'Airway wall splice quantitative trait locus analysis reveals novel downstream mechanisms for known asthma single-nucleotide polymorphisms', ERJ Open Research, vol. 9, no. 2, pp. 00413-2022. Krishnan, S, DeMaere, MZ, Beck, D, Ostrowski, M, Seymour, JR & Darling, AE 2023, 'Rhometa: Population recombination rate estimation from metagenomic read datasets.', PLoS Genet, vol. 19, no. 3, pp. e1010683-e1010683. Prokaryotic evolution is influenced by the exchange of genetic information between species through a process referred to as recombination. The rate of recombination is a useful measure for the adaptive capacity of a prokaryotic population. We introduce Rhometa (https://github.com/sid-krish/Rhometa), a new software package to determine recombination rates from shotgun sequencing reads of metagenomes. It extends the composite likelihood approach for population recombination rate estimation and enables the analysis of modern short-read datasets. We evaluated Rhometa over a broad range of sequencing depths and complexities, using simulated and real experimental short-read data aligned to external reference genomes. Rhometa offers a comprehensive solution for determining population recombination rates from contemporary metagenomic read datasets. Rhometa extends the capabilities of conventional sequence-based composite likelihood population recombination rate estimators to include modern aligned metagenomic read datasets with diverse sequencing depths, thereby enabling the effective application of these techniques and their high accuracy rates to the field of metagenomics. Using simulated datasets, we show that our method performs well, with its accuracy improving with increasing numbers of genomes. Rhometa was validated on a real S. pneumoniae transformation experiment, where we show that it obtains plausible estimates of the rate of recombination. Finally, the program was also run on ocean surface water metagenomic datasets, through which we demonstrate that the program works on uncultured metagenomic datasets. Kumar, R, Kumar, R, Sharma, N, Khurana, N, Singh, SK, Satija, S, Mehta, M & Vyas, M 2023, 'Corrigendum to “Pharmacological evaluation of bromelain in mouse model of Alzheimer’s disease” [NeuroToxicology 90 (2022) 19–34]', NeuroToxicology. Kumar, U, Rashmi, Srivastava, A, Kumari, N, Chatterjee, C & Raghuwanshi, NS 2023, 'Evaluation of Standardized MODIS-Terra Satellite-Derived Evapotranspiration Using Genetic Algorithm for Better Field Applicability in a Tropical River Basin', Journal of the Indian Society of Remote Sensing, vol. 51, no. 5, pp. 1001-1012. Kumari, V, Vishwas, S, Kumar, R, Kakoty, V, Khursheed, R, Babu, MR, Harish, V, Mittal, N, Singh, PK, Alharthi, NS, Hakami, MA, Aba Alkhayl, FF, Gupta, G, Rubis, GD, Paudel, KR, Singh, M, Zandi, M, Oliver, BG, Dua, K & Singh, SK 2023, 'An overview of biomedical applications for gold nanoparticles against lung cancer', Journal of Drug Delivery Science and Technology, vol. 86, pp. 104729-104729. Kumbhar, P, Kaur, J, De Rubis, G, Paudel, KR, Prasher, P, Patel, VK, Corrie, L, Chellappan, DK, Gupta, G, Singh, SK, Patravale, V, Disouza, J & Dua, K 2023, 'Inhalation drug delivery in combating pulmonary infections: Advances and challenges', Journal of Drug Delivery Science and Technology, vol. 89, pp. 105022-105022. L I, H, Huang, X, Cai, H, Herok, G, He, J, Su, Y, Li, W, Yi, C, Oliver, BG & Chen, H 2023, 'Mitochondrial dysfunction in a rat model and the related risk of metabolic disorders.', J Tradit Chin Med, vol. 43, no. 1, pp. 95-104. OBJECTIVE: To explore whether kidney deficiency (KYD) is prone to metabolic disorders may be linked to impaired mitochondrial function in thermogenesis and metabolic tissues. METHODS: A rat model of KYD was used, which was established using Sprague Dawley rat dams with warm preference subjected to herbal treatment that can improve kidney . The human relevance was confirmed by reduced serum corticosterone levels, and increased preference for warm location. RESULTS: KYD Rats were underdeveloped. Adenosine-triphosphate (ATP) production was reduced in the brown fat, but increased in the muscle. However, oxidative phosphorylated complexes to generate ATP and mitochondrial biogenesis marker were reduced in both tissues. When the second insult of high-fat diet (HFD) was introduced, KYD rats gained less weight yet developed more severe lipid and glucose metabolic disorders. This may be driven by disregulated liver gluconeogenesis marker forkhead box protein O1 and lipid metabolic regulator cholesterol 7 alpha-hydroxylase. CONCLUSION: KYD rats exhibited reduced mito-chondrial function in the brown fat, but were partially compensated by skeletal muscle, associated with the phenotype of warm preference and metabolic disorder, which was further exacerbated by additional HFD consumption. Future studies can focus on treatment targetting mitochondria function to reverse this phenotype. Lai, CK, Merklein, M, Casas-Bedoya, A, Liu, Y, Madden, SJ, Poulton, CG, Steel, MJ & Eggleton, BJ 2023, 'Optimizing performance for an on-chip stimulated Brillouin scattering-based isolator', Journal of the Optical Society of America B, vol. 40, no. 3, pp. 523-523. Lane, M, Kashani, M, Barratt, JLN, Qvarnstrom, Y, Yabsley, MJ, Garrett, KB & Bradbury, RS 2023, 'Application of a universal parasite diagnostic test to biological specimens collected from animals', International Journal for Parasitology: Parasites and Wildlife, vol. 20, pp. 20-30. Lankage, UM, Holt, SA, Bridge, S, Cornell, B & Cranfield, CG 2023, 'Triglyceride-Tethered Membrane Lipase Sensor.', ACS Appl Mater Interfaces. Sensors that can quickly measure the lipase activity from biological samples are useful in enzyme production and medical diagnostics. However, current lipase sensors have limitations such as requiring fluorescent labels, pH control of buffer vehicles, or lengthy assay preparation. We introduce a sparsely tethered triglyceride substrate anchored off of a gold electrode for the impedance sensing of real-time lipase activity. The tethered substrate is self-assembled using a rapid solvent exchange technique and can form an anchored bilayer 1 nm off the gold electrode. This allows for an aqueous reservoir region, providing access to ions transported through membrane defects caused by triglyceride enzymatic hydrolysis. Electrical impedance spectroscopy techniques can readily detect the decrease in resistance caused by enzymatically induced defects. This rapid and reliable lipase detection method can have potential applications in disease studies, monitoring of lipase production, and as point-of-care diagnostic devices. Lapine, M & Gorlach, M 2023, 'Current trends and nonlinear effects in multilayered metamaterials—FF-1:IL01', Ceramics International, vol. 49, no. 14, pp. 24422-24427. Lau, V, Spindler, X & Roux, C 2023, 'The transfer of fibres between garments in a choreographed assault scenario.', Forensic Sci Int, vol. 349, pp. 111746-111746. Our fundamental understanding of fibre transfer remains based on early seminal transfer studies that were largely mechanical simulations. However, transfer events in the real world are uncontrolled in nature. This study takes a novel approach to address this discrepancy, with skilled jiu-jitsu practitioners performing a choreographed 'standard' assault scenario to investigate the transfer of fibres between a cotton T-shirt and cotton/polyester hoody. Garments were collected immediately after the scenario and examined for the number, length and zonal distribution of transferred fibres. It was observed that cotton transferred the most fibres, on average twice as many from blended hoodies than T-shirts; whilst polyester transferred the least. Shorter fibres transferred and were recovered more readily than longer fibres; however, it was more likely to recover polyester fibres> 5 mm. The number and length of fibres transferred from the attacker's garment mainly depended on the construction of the donor textile (including sheddability) and properties of the fibres. Conversely, properties of the recipient textile were more significant factors when considering transfer from the victim's garment. Location of recovered fibres was found to be dependent on the wearer's role, but generally, upper zones and sleeves of both garments were most populated. Overall, these results will contribute to grow our current knowledge base regarding fibre transfer between donor and recipient textiles in a common assault situation. This will ultimately aid experts support evaluation with regards to competing hypotheses such as in a Bayesian framework. Le Brun, AP, Huang, T-Y, Pullen, S, Nelson, ARJ, Spedding, J & Holt, SA 2023, 'Spatz: the time-of-flight neutron reflectometer with vertical sample geometry at the OPAL research reactor', Journal of Applied Crystallography, vol. 56, no. 1, pp. 18-25. Lee, G, Rasouli, AS, Lee, B-H, Zhang, J, Won, DH, Xiao, YC, Edwards, JP, Lee, MG, Jung, ED, Arabyarmohammadi, F, Liu, H, Grigioni, I, Abed, J, Alkayyali, T, Liu, S, Xie, K, Miao, RK, Park, S, Dorakhan, R, Zhao, Y, O’Brien, CP, Chen, Z, Sinton, D & Sargent, E 2023, 'CO2 electroreduction to multicarbon products from carbonate capture liquid', Joule, vol. 7, no. 6, pp. 1277-1288. Letnic, M, Roberts, B, Hodgson, M, Ross, AK, Cuartas, S, Lapwong, Y, Price, O, Sentinella, N & Webb, JK 2023, 'Fire severity influences the post‐fire habitat structure and abundance of a cool climate lizard', Austral Ecology, vol. 48, no. 7, pp. 1440-1453. Lev, B, Chennath, M, Cranfield, CG, Cornelius, F, Allen, TW & Clarke, RJ 2023, 'Involvement of the alpha-subunit N-terminus in the mechanism of the Na+,K+-ATPase', Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, vol. 1870, no. 7, pp. 119539-119539. Li, C, Tareen, AK, Khan, K, Long, J, Hussain, I, Khan, MF, Iqbal, M, Xie, Z, Zhang, Y, Mahmood, A, Mahmood, N, Ahmad, W & Zhang, H 2023, 'Highly efficient, remarkable sensor activity and energy storage properties of MXenes and borophene nanomaterials', Progress in Solid State Chemistry, vol. 70, pp. 100392-100392. Li, D, Elankumaran, P, Kudinha, T, Kidsley, AK, Trott, DJ, Jarocki, VM & Djordjevic, SP 2023, 'Dominance of Escherichia coli sequence types ST73, ST95, ST127 and ST131 in Australian urine isolates: a genomic analysis of antimicrobial resistance and virulence linked to F plasmids.', Microb Genom, vol. 9, no. 7. Extraintestinal pathogenic Escherichia coli (ExPEC) are the most frequent cause of urinary tract infections (UTIs) globally. Most studies of clinical E. coli isolates are selected based on their antimicrobial resistance (AMR) phenotypes; however, this selection bias may not provide an accurate portrayal of which sequence types (STs) cause the most disease. Here, whole genome sequencing (WGS) was performed on 320 E. coli isolates from urine samples sourced from a regional hospital in Australia in 2006. Most isolates (91%) were sourced from patients with UTIs and were not selected based on any AMR phenotypes. No significant differences were observed in AMR and virulence genes profiles across age sex, and uro-clinical syndromes. While 88 STs were identified, ST73, ST95, ST127 and ST131 dominated. F virulence plasmids carrying senB-cjrABC (126/231; 55%) virulence genes were a feature of this collection. These senB-cjrABC+ plasmids were split into two categories: pUTI89-like (F29:A-:B10 and/or >95 % identity to pUTI89) (n=73) and non-pUTI89-like (n=53). Compared to all other plasmid replicons, isolates with pUTI89-like plasmids carried fewer antibiotic resistance genes (ARGs), whilst isolates with senB-cjrABC+/non-pUTI89 plasmids had a significantly higher load of ARGs and class 1 integrons. F plasmids were not detected in 89 genomes, predominantly ST73. Our phylogenomic analyses identified closely related isolates from the same patient associated with different pathologies and evidence of strain-sharing events involving isolates sourced from companion and wild animals. Li, L, Cao, X, Huo, J, Qu, J, Chen, W, Liu, C, Zhao, Y, Liu, H & Wang, G 2023, 'High valence metals engineering strategies of Fe/Co/Ni-based catalysts for boosted OER electrocatalysis', Journal of Energy Chemistry, vol. 76, pp. 195-213. Li, Q, Han, N, Chai, J, Zhang, W, Du, J, Tian, H, Liu, H, Wang, G & Tang, B 2023, 'Strategies to improve metal-organic frameworks and their derived oxides as lithium storage anode materials', Energy, vol. 282, pp. 128378-128378. Li, Y, Faiz, A, Moshage, H, Schilling, L & Kamps, JAAM 2023, 'Responses of retinal and brain microvasculature to streptozotocin induced diabetes revealed by global expression profiling', Diabetes and Vascular Disease Research, vol. 20, no. 1, pp. 147916412211475-147916412211475. Liau, S, Wang, JZ, Zagarella, E, Paulus, P, Dang, NHQH, Rawling, T, Murray, M & Zhou, F 2023, 'An update on inflammation in uveal melanoma', Biochimie, vol. 212, pp. 114-122. Lin, G, Khan, JU, Zhand, S, Liu, Y & Jin, D 2023, 'Modular DNAzymes-Hydrogel Membrane Carriers for Highly Sensitive Isothermal Cross-Cascade Detection of Pathogenic Bacteria Nucleic Acids', Analytical Chemistry, vol. 95, no. 35, pp. 13353-13360. Lin, J, Xing, B & Jin, D 2023, 'Optical Bioimaging and Therapy', Advanced Optical Materials, vol. 11, no. 11. Liu, G & Summer, R 2023, 'Reclaiming the Balance: Blocking Glutamine Uptake to Restrain Pulmonary Fibrosis', American Journal of Respiratory Cell and Molecular Biology, vol. 69, no. 4, pp. 378-379. Liu, L, Liu, Y, Zhang, X, Yuan, YL, Chen, ZH, Chen-Yu Hsu, A, Oliver, BG, Xie, M, Qin, L, Li, WM, Liu, D, Wang, G & Wood, LG 2023, 'Dyslipidemia Is Associated With Worse Asthma Clinical Outcomes: A Prospective Cohort Study', The Journal of Allergy and Clinical Immunology: In Practice, vol. 11, no. 3, pp. 863-872.e8. Liu, Y, Lin, G, Medina-Sánchez, M, Guix, M, Makarov, D & Jin, D 2023, 'Responsive Magnetic Nanocomposites for Intelligent Shape-Morphing Microrobots', ACS Nano, vol. 17, no. 10, pp. 8899-8917. Liu, Y, Wen, S, Wang, F, Zuo, C, Chen, C, Zhou, J & Jin, D 2023, 'Population Control of Upconversion Energy Transfer for Stimulation Emission Depletion Nanoscopy', Advanced Science, vol. 10, no. 20. Liu, Y, Zhou, J, Wen, S, Wang, F, Wu, H, Chen, Q, Zuo, C & Jin, D 2023, 'On-Chip Mirror Enhanced Multiphoton Upconversion Super-Resolution Microscopy', Nano Letters, vol. 23, no. 12, pp. 5514-5519. Loo, S, Roberts, AW, Anstee, NS, Kennedy, GA, He, SZ-X, Schwarer, AP, Enjeti, AK, D'Rozario, J, Marlton, P, Bilmon, I, Taper, JM, Cull, G, Tiley, C, Verner, E, Hahn, U, Hiwase, DK, Iland, HJ, Murphy, NE, Ramanathan, S, Reynolds, J, Ong, DM, Tiong, IS, Wall, M, Murray, M, Rawling, T, Leadbetter, J, Rowley, L, Latimer, M, Yuen, SLS, Ting, SB, Fong, CY, Morris, KL, Bajel, A, Seymour, JF, Levis, MJ & Wei, AH 2023, 'Sorafenib plus intensive chemotherapy in newly diagnosed FLT3-ITD AML:a randomized, placebo-controlled study by the ALLG.', Blood. Sorafenib maintenance improves outcome after hematopoietic cell transplant (HCT) for patients with FLT3-ITD acute myeloid leukemia (AML). Although promising outcomes have been reported for sorafenib plus intensive chemotherapy, randomized data are limited. This placebo-controlled, phase 2 study (ACTRN12611001112954) randomized 102 patients 18-65 years (2:1) to sorafenib vs placebo (days 4-10) combined with intensive induction; idarubicin 12mg/m2 days 1-3 plus cytarabine 1.5g/m2 twice daily on days 1,3,5,7 (18-55 years) or 100mg/m2 days 1-7 (56-65 years), consolidation therapy, followed by maintenance treatment for 12 months (post-HCT excluded) in newly diagnosed FLT3-ITD AML. Four patients were excluded from modified intention-to-treat final analysis (3 not dosed and 1 later found to be FLT3-ITD negative). Rates of complete remission (CR)/CR with incomplete hematologic recovery (CR/CRi) were high in both arms (sorafenib 78%/9%, placebo 70%/24%). With 49.1 months median follow-up, the primary endpoint of event-free survival (EFS) was not improved by sorafenib (2-year EFS 47.9% vs 45.4%)(hazard ratio [HR] 0.87;95% confidence interval [CI] 0.51-1.51, p=0.61). Two-year overall survival (OS) was 67% in the sorafenib arm and 58% in the placebo arm (HR 0.76; 95% CI 0.42-1.39). For patients transplanted in first remission, 2-year OS was 84% and 67% in the sorafenib and placebo arms, respectively (HR 0.45;95% CI 0.18-1.12, p=0.08). In exploratory analyses, FLT3-ITD measurable residual disease negative status (<0.001%) post-induction was associated with improved 2-year OS (83% vs 60%) (HR 0.4;95% CI 0.17-0.93, p=0.028). In conclusion, routine use of pre-transplant sorafenib plus chemotherapy in unselected patients with FLT3-ITD AML is not supported by this study. Lotfi, M, Tambuwala, MM, Shahcheraghi, SH, Ayatollahi, J, Aljabali, AAA, Al-Zoubi, MS, Panda, PK, Mishra, V, Satija, S, Charbe, NB, Serrano-Aroca, Á, Bahar, B, Takayama, K, Goyal, R, Bhatia, A, Almutary, AG, Alnuqaydan, AM, Mishra, Y, Negi, P, Courtney, A, McCarron, PA & Bakshi, HA 2023, 'Gene Therapy for Neuropsychiatric Disorders: Potential Targets andTools', CNS & Neurological Disorders - Drug Targets, vol. 22, no. 1, pp. 51-65. Lubchenco, J, Camp, EF, Vargas, CA, Belhabib, D, Anna, Z, Amon, DJ, Metaxas, A & Harden-Davies, H 2023, 'Priorities for progress towards Sustainable Development Goal 14 ‘Life below water’', Nature Ecology & Evolution, vol. 7, no. 10, pp. 1564-1569. Ma, H, Hu, M, Zhang, C, Jia, J, Fu, S, Wei, Z & Yun, K 2023, 'HPLC-MS/MS determination and the postmortem distribution or postmortem redistribution of paraquat and its metabolites in four fatal intoxication cases', Forensic Science International, vol. 345, pp. 111606-111606. Ma, H, Mao, R, Wang, R, Liang, Y, Jin, Y, Chen, H & Cheng, J 2023, 'Effects of inactivated COVID‐19 vaccinations on the IVF/ICSI‐ET live birth rate and pregnancy complication in a population of southern China: A retrospective cohort study', Journal of Evidence-Based Medicine, vol. 16, no. 2, pp. 107-110. Ma, H, Yu, K, Wang, H, Liu, J, Cheng, YY, Kang, Y, Wang, H, Zhang, J & Song, K 2023, 'Fabrication and detection of a novel hybrid conductive scaffold based on alginate/gelatin/carboxylated carbon nanotubes (Alg/Gel/mMWCNTs) for neural tissue engineering', Tissue and Cell, vol. 80, pp. 101995-101995. Ma, H, Zheng, L, Yang, S, Cheng, YY, Liu, T, Wu, S, Wang, H, Zhang, J & Song, K 2023, 'Construction and properties detection of 3D micro-structure scaffolds base on decellularized sheep kidney before and after crosslinking', Journal of Biomaterials Applications, vol. 37, no. 9, pp. 1593-1604. Ma, Z, Song, A, Liu, Z, Guo, Y, Yang, X, Li, Q, Fan, Y, Dai, L, Tian, H, Qin, X, Liu, H, Shao, G & Wang, G 2023, 'Nanoconfined Expansion Behavior of Hollow MnS@Carbon Anode with Extended Lithiation Cyclic Stability', Advanced Functional Materials, vol. 33, no. 28. Machungo, CW, Berna, AZ, McNevin, D, Wang, R, Harvey, J & Trowell, S 2023, 'Evaluation of performance of metal oxide electronic nose for detection of aflatoxin in artificially and naturally contaminated maize', Sensors and Actuators B: Chemical, vol. 381, pp. 133446-133446. Madin, JS, McWilliam, M, Quigley, K, Bay, LK, Bellwood, D, Doropoulos, C, Fernandes, L, Harrison, P, Hoey, AS, Mumby, PJ, Ortiz, JC, Richards, ZT, Riginos, C, Schiettekatte, NMD, Suggett, DJ & van Oppen, MJH 2023, 'Selecting coral species for reef restoration', Journal of Applied Ecology, vol. 60, no. 8, pp. 1537-1544. Mahmood, A, Zheng, Z & Chen, Y 2023, 'Zinc-Bromine Batteries: Challenges, Prospective Solutions, and Future.', Adv Sci (Weinh), p. e2305561. Zinc-bromine batteries (ZBBs) have recently gained significant attention as inexpensive and safer alternatives to potentially flammable lithium-ion batteries. Zn metal is relatively stable in aqueous electrolytes, making ZBBs safer and easier to handle. However, Zn metal anodes are still affected by several issues, including dendrite growth, Zn dissolution, and the crossover of Br species from cathodes to corrode anodes, resulting in self-discharge and fast performance fading. Similarly, Br2 undergoes sluggish redox reactions on cathodes, which brings several issues such as poor reaction kinetics, the highly corrosive nature of Br species leading to corrosion of separators and poisoning of anodes, and the volatile nature of Br species causing increased internal pressures, etc. These issues are compounded in flowless ZBB configuration as no fresh electrolyte is available to provide extra/fresh reaction species. In this review, the factors controlling the performance of ZBBs in flow and flowless configurations are thoroughly reviewed, along with the status of ZBBs in the commercial sector. The review also summarizes various novel methodologies to mitigate these challenges and presents research areas for future studies. In summary, this review will offer a perspective on the historical evolution, recent advancements, and prospects of ZBBs. Malik, R, Paudel, KR, Manandhar, B, De, RG, Shen, J, Mujwar, S, Singh, TG, Singh, SK, Gupta, G, Adams, J, MacLoughlin, R, Oliver, BGG, Hansbro, PM, Chellappan, DK & Dua, K 2023, 'Agarwood oil nanoemulsion counteracts LPS-induced inflammation and oxidative stress in RAW264.7 mouse macrophages', Pathology - Research and Practice, vol. 251, pp. 154895-154895. Malyla, V, Paudel, KR, De, RG, Hansbro, NG, Hansbro, PM & Dua, K 2023, 'Cigarette smoking induces lung cancer tumorigenesis via upregulation of the WNT/β-catenin signaling pathway', Life Sciences, vol. 326, pp. 121787-121787. Mao, S, Feng, A, Zhang, S, Onggowarsito, C, Chen, Q, Su, D & Fu, Q 2023, 'Investigation of structure-property-application relationships of a hydrogel-based solar vapor generator', Journal of Materials Chemistry A, vol. 11, no. 42, pp. 23062-23070. Without requiring any extra energy, a polymeric hydrogel based solar vapor generator (SVG) offers a promising complement to current energy-intensive desalination processes. The hydrophilic groups of polymer hydrogels can interact with water molecules through hydrogen bonding, thereby activating other adjacent water molecules to an intermediate water state, thus lowering the total enthalpy of water and making it easier to evaporate. However, there is still a knowledge gap in the structure-property relationships between hydrogel functional groups and water molecules. Here, we prepare seven hydrogels containing different functional groups, fairly compare their hydration ability and establish the relationship between the hydrophilic groups and the properties (e.g., evaporation enthalpy, electrostatic potential, etc.) of the corresponding polymer hydrogels, as well as their solar evaporation performance. The resultant polyacrylamide (PAM) SVG with -NH2 groups, standing out from the other hydrogels, shows rapid water replenishment capability, a high intermediate water content of 78.2%, low equivalent water vaporization enthalpy, an excellent seawater evaporation rate of 3.41 kg m−1 h−1, and excellent desalination capacity to reduce the main ion concentrations by 3-5 orders. We expect that this fundamental research could provide guidance for the development of future SVGs and ultimately contribute to the development of efficient solar vapor generation systems. Mariandry, K, Kokate, R, Somerville, SV, Gloag, L, Cheong, S, Carroll, LR, Kumar, PV, Gooding, JJ & Tilley, RD 2023, 'Controlling Platinum Active Sites on Silver Nanoparticles for Hydrogen Evolution Reaction', Chemistry of Materials, vol. 35, no. 20, pp. 8636-8644. Marlton, FP, Brown, AJ, Sale, M, Maljuk, A, Büchner, B, Lewis, W, Luck, I, Wood, ML, Mole, RA & Ling, CD 2023, 'Selective Interstitial Hydration Explains Anomalous Structural Distortions and Ionic Conductivity in 6H-Ba4Ta2O9·1/2H2O', Chemistry of Materials, vol. 35, no. 7, pp. 2740-2751. Marsh, JW, Kirk, C & Ley, RE 2023, 'Toward Microbiome Engineering: Expanding the Repertoire of Genetically Tractable Members of the Human Gut Microbiome', Annual Review of Microbiology, vol. 77, no. 1, pp. 427-449. Mashkani, O, Ernst, AT, Thiruvady, D & Gu, H 2023, 'Minimizing patients total clinical condition deterioration in operating theatre departments', Annals of Operations Research, vol. 328, no. 1, pp. 821-857. Masoumeh Ghorbanpour, S, Wen, S, Kaitu'u‐Lino, TJ, Hannan, NJ, Jin, D & McClements, L 2023, 'Quantitative Point of Care Tests for Timely Diagnosis of Early‐Onset Preeclampsia with High Sensitivity and Specificity', Angewandte Chemie, vol. 135, no. 26. Masoumeh Ghorbanpour, S, Wen, S, Kaitu'u‐Lino, TJ, Hannan, NJ, Jin, D & McClements, L 2023, 'Quantitative Point of Care Tests for Timely Diagnosis of Early‐Onset Preeclampsia with High Sensitivity and Specificity', Angewandte Chemie International Edition, vol. 62, no. 26. Matar, F, Shi, Y-L, Ling, FC-C, Salih, A, Irvine, CP, De Silva, S, Phillips, MR & Ton-That, C 2023, 'Bandgap narrowing and hole self-trapping reduction in Ga2O3 by Bi2O3 alloying', Journal of Alloys and Compounds, vol. 960, pp. 170983-170983. Matheson, S, Fleck, R, Irga, PJ & Torpy, FR 2023, 'Phytoremediation for the indoor environment: a state-of-the-art review', Reviews in Environmental Science and Bio/Technology, vol. 22, no. 1, pp. 249-280. Matheson, S, Fleck, R, Lockwood, T, Gill, RL, Irga, PJ & Torpy, FR 2023, 'Fuelling phytoremediation: gasoline degradation by green wall systems—a case study', Environmental Science and Pollution Research. Matthews, JL, Hoch, L, Raina, J-B, Pablo, M, Hughes, DJ, Camp, EF, Seymour, JR, Ralph, PJ, Suggett, DJ & Herdean, A 2023, 'Symbiodiniaceae photophysiology and stress resilience is enhanced by microbial associations.', Sci Rep, vol. 13, no. 1, p. 20724. Symbiodiniaceae form associations with extra- and intracellular bacterial symbionts, both in culture and in symbiosis with corals. Bacterial associates can regulate Symbiodiniaceae fitness in terms of growth, calcification and photophysiology. However, the influence of these bacteria on interactive stressors, such as temperature and light, which are known to influence Symbiodiniaceae physiology, remains unclear. Here, we examined the photophysiological response of two Symbiodiniaceae species (Symbiodinium microadriaticum and Breviolum minutum) cultured under acute temperature and light stress with specific bacterial partners from their microbiome (Labrenzia (Roseibium) alexandrii, Marinobacter adhaerens or Muricauda aquimarina). Overall, bacterial presence positively impacted Symbiodiniaceae core photosynthetic health (photosystem II [PSII] quantum yield) and photoprotective capacity (non-photochemical quenching; NPQ) compared to cultures with all extracellular bacteria removed, although specific benefits were variable across Symbiodiniaceae genera and growth phase. Symbiodiniaceae co-cultured with M. aquimarina displayed an inverse NPQ response under high temperatures and light, and those with L. alexandrii demonstrated a lowered threshold for induction of NPQ, potentially through the provision of antioxidant compounds such as zeaxanthin (produced by Muricauda spp.) and dimethylsulfoniopropionate (DMSP; produced by this strain of L. alexandrii). Our co-culture approach empirically demonstrates the benefits bacteria can deliver to Symbiodiniaceae photochemical performance, providing evidence that bacterial associates can play important functional roles for Symbiodiniaceae. Matthews, JL, Khalil, A, Siboni, N, Bougoure, J, Guagliardo, P, Kuzhiumparambil, U, DeMaere, M, Le, RNM, Seymour, JR, Suggett, DJ & Raina, J-B 2023, 'Coral endosymbiont growth is enhanced by metabolic interactions with bacteria.', Nat Commun, vol. 14, no. 1, p. 6864. Bacteria are key contributors to microalgae resource acquisition, competitive performance, and functional diversity, but their potential metabolic interactions with coral microalgal endosymbionts (Symbiodiniaceae) have been largely overlooked. Here, we show that altering the bacterial composition of two widespread Symbiodiniaceae species, during their free-living stage, results in a significant shift in their cellular metabolism. Indeed, the abundance of monosaccharides and the key phytohormone indole-3-acetic acid (IAA) were correlated with the presence of specific bacteria, including members of the Labrenzia (Roseibium) and Marinobacter genera. Single-cell stable isotope tracking revealed that these two bacterial genera are involved in reciprocal exchanges of carbon and nitrogen with Symbiodiniaceae. We identified the provision of IAA by Labrenzia and Marinobacter, and this metabolite caused a significant growth enhancement of Symbiodiniaceae. By unravelling these interkingdom interactions, our work demonstrates how specific bacterial associates fundamentally govern Symbiodiniaceae fitness. McClements, L, Ghorbanpour, S, Cartland, S, Seth, S, Ecker, R, Richards, C, McGrath, K, Cole, L, Warkiani, M & Kavurma, M 2023, 'FK506-Binding Protein Like (FKBPL) Regulates Hypoxia-induced Factor-α and Restores Endothelial Function and Vascular Integrity in Ischaemia-induced Angiogenesis', Heart, Lung and Circulation, vol. 32, pp. S412-S412. McLaren, E, Bronstein, O, Kroh, A, Winkler, V, Miskelly, A, Sommer, B & Byrne, M 2023, 'Hidden in plain sight: Tripneustes kermadecensis (Echinodermata: Echinoidea) is a junior synonym of the eastern Australian sea urchin Evechinus australiae described in 1878', Invertebrate Systematics, vol. 37, no. 11, pp. 741-741. McNaughton, DA, Ryder, WG, Gilchrist, AM, Wang, P, Fares, M, Wu, X & Gale, PA 2023, 'New insights and discoveries in anion receptor chemistry', Chem, vol. 9, no. 11, pp. 3045-3112. This review offers a broad overview of the advancements in anion receptor chemistry in 2021 and 2022. Detailed examples of acclaimed work in fundamental recognition, sensing and detection, catalysis, self-assembly, extraction, and transmembrane transport are included. McNeilly, O, Mann, R, Cummins, ML, Djordjevic, SP, Hamidian, M & Gunawan, C 2023, 'Development of Nanoparticle Adaptation Phenomena in Acinetobacter baumannii: Physiological Change and Defense Response.', Microbiol Spectr, vol. 11, no. 1, p. e0285722. The present work describes the evolution of a resistance phenotype to a multitargeting antimicrobial agent, namely, silver nanoparticles (nanosilver; NAg), in the globally prevalent bacterial pathogen Acinetobacter baumannii. The Gram-negative bacterium has recently been listed as a critical priority pathogen requiring novel treatment options by the World Health Organization. Through prolonged exposure to the important antimicrobial nanoparticle, the bacterium developed mutations in genes that encode the protein subunits of organelle structures that are involved in cell-to-surface attachment as well as in a cell envelope capsular polysaccharide synthesis-related gene. These mutations are potentially correlated with stable physiological changes in the biofilm growth behavior and with an evident protective effect against oxidative stress, most likely as a feature of toxicity defense. We further report a different adaptation response of A. baumannii to the cationic form of silver (Ag+). The bacterium developed a tolerance phenotype to Ag+, which was correlated with an indicative surge in respiratory activity and changes in cell morphology, of which these are reported characteristics of tolerant bacterial populations. The findings regarding adaptation phenomena to NAg highlight the risks of the long-term use of the nanoparticle on a priority pathogen. The findings urge the implementation of strategies to overcome bacterial NAg adaptation, to better elucidate the toxicity mechanisms of the nanoparticle, and preserve the efficacy of the potent alternative antimicrobial agent in this era of antimicrobial resistance. IMPORTANCE Several recent studies have reported on the development of bacterial resistance to broad-spectrum antimicrobial silver nanoparticles (nanosilver; NAg). NAg is currently one of the most important alternative antimicrobial agents. However, no studies have yet established whether Acinetobacter baumannii, a globally prevalent nosocomial path... Mello, MG, Westerhausen, MT, Lockwood, TE, Singh, P, Wanagat, J & Bishop, DP 2023, 'Immunolabelling perturbs the endogenous and antibody-conjugated elemental concentrations during immuno-mass spectrometry imaging', Analytical and Bioanalytical Chemistry. Mendes, DAV, Engel, DF, Ricci, MF, Cruz, CS, Lopes, Í, Alves, DA, d', AM, Magalhães, J, Machado, EC, Rocha, VM, Carvalho, TG, Lacerda, LSB, Pimenta, JC, Aganetti, M, Zuccoli, GS, Smith, BJ, Carregari, VC, da, SRE, Galvão, I, Dantas, CG, Garcia, CC, Teixeira, MM, André, LC, Ribeiro, FM, Martins, FS, Saia, RS, Costa, VV, Martins-de-Souza, D, Hansbro, PM, Marques, JT, Aguiar, ERGR & Vieira, AT 2023, 'Gut microbiota from patients with COVID-19 cause alterations in mice that resemble post-COVID symptoms.', Gut Microbes, vol. 15, no. 2, p. 2249146. Long-term sequelae of coronavirus disease (COVID)-19 are frequent and of major concern. Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection affects the host gut microbiota, which is linked to disease severity in patients with COVID-19. Here, we report that the gut microbiota of post-COVID subjects had a remarkable predominance of Enterobacteriaceae strains with an antibiotic-resistant phenotype compared to healthy controls. Additionally, short-chain fatty acid (SCFA) levels were reduced in feces. Fecal transplantation from post-COVID subjects to germ-free mice led to lung inflammation and worse outcomes during pulmonary infection by multidrug-resistant Klebsiella pneumoniae. transplanted mice also exhibited poor cognitive performance. Overall, we show prolonged impacts of SARS-CoV-2 infection on the gut microbiota that persist after subjects have cleared the virus. Together, these data demonstrate that the gut microbiota can directly contribute to post-COVID sequelae, suggesting that it may be a potential therapeutic target. Menictas, M, Di Credico, G & Wand, MP 2023, 'Streamlined Variational Inference for Linear Mixed Models with Crossed Random Effects', Journal of Computational and Graphical Statistics, vol. 32, no. 1, pp. 99-115. Mercer-Mapstone, L, Banas, K, Davila, Y, Huston, W, Meier, P & Mekonnen, B 2023, '‘I’m not alone’: outcomes of a faculty-wide initiative for co-creating inclusive science curricula through student–staff partnership', International Journal for Academic Development, vol. 28, no. 2, pp. 149-162. Mercieca, AL, Fursman, HC, Alonzo, M, Chadwick, S & McDonagh, AM 2023, 'Organic impurity profiling of 3,4-methylenedioxyamphetamine (MDA) synthesised from helional', Forensic Science International, vol. 350, pp. 111788-111788. Mi, C, Zhang, X, Yang, C, Wu, J, Chen, X, Ma, C, Wu, S, Yang, Z, Qiao, P, Liu, Y, Wu, W, Guo, Z, Liao, J, Zhou, J, Guan, M, Liang, C, Liu, C & Jin, D 2023, 'Bone disease imaging through the near-infrared-II window', Nature Communications, vol. 14, no. 1, p. 6287. Miao, RK, Wang, N, Hung, S-F, Huang, W-Y, Zhang, J, Zhao, Y, Ou, P, Wang, S, Edwards, JP, Tian, C, Han, J, Xu, Y, Fan, M, Huang, JE, Xiao, YC, Ip, AH, Liang, H, Sargent, EH & Sinton, D 2023, 'Electrified Cement Production via Anion-Mediated Electrochemical Calcium Extraction', ACS Energy Letters, vol. 8, no. 11, pp. 4694-4701. Milner, KV, French, K, Krix, DW, Valenzuela, SM & Leigh, A 2023, 'The effects of spring versus summer heat events on two arid zone plant species under field conditions', Functional Plant Biology, vol. 50, no. 6, pp. 455-469. Minzière, VR, Gassner, A, Gallidabino, M, Roux, C & Weyermann, C 2023, 'The relevance of gunshot residues in forensic science', WIREs Forensic Science, vol. 5, no. 1. Mishra, N, Bhatt, S, Paudel, KR, Hansbro, PM & Dua, K 2023, 'Preface', Synbiotics for the Management of Cancer, pp. v-vi. Mitchell, A, Hayes, C, Booth, DJ & Nagelkerken, I 2023, 'Future shock: Ocean acidification and seasonal water temperatures alter the physiology of competing temperate and coral reef fishes', Science of The Total Environment, vol. 883, pp. 163684-163684. Mitchell, A, Hayes, C, Booth, DJ & Nagelkerken, I 2023, 'Projected ocean acidification and seasonal temperature alter the behaviour and growth of a range extending tropical fish', Coral Reefs, vol. 42, no. 4, pp. 919-929. Mohamad, MSB, Reyes, R-J, De, RG, Paudel, KR, Hansbro, P, Dua, K & Chellappan, DK 2023, 'The versatility of 18β-glycyrrhetinic acid in attenuating pulmonary inflammatory disorders', EXCLI Journal, vol. 22, pp. 188-190. Moneer, EA, Bakr, BA, Akl, SH, Shahin, YH, Elwakil, BH, Hagar, M, Paudel, KR, Aljuhani, A, Aouad, MR & Rezki, N 2023, 'Design and synthesis of novel bis-pyridinium based-ionic liquids as potent antiparasitic agents', Heliyon, vol. 9, no. 4, pp. e15431-e15431. Montblanch, AR-P, Barbone, M, Aharonovich, I, Atatüre, M & Ferrari, AC 2023, 'Layered materials as a platform for quantum technologies', Nature Nanotechnology, vol. 18, no. 6, pp. 555-571. Moore, SJ, Deplazes, E & Mancera, RL 2023, 'Influence of force field choice on the conformational landscape of rat and human islet amyloid polypeptide', Proteins: Structure, Function, and Bioinformatics, vol. 91, no. 3, pp. 338-353. Moraleda Merlo, AB, Roux, C, Bécue, A & Weyermann, C 2023, 'A comparison of the natural and groomed fingermark lipid composition of different donors using GC/MS', Forensic Science International, vol. 348, pp. 111709-111709. Morel, J, McNeilly, O, Grundy, S, Brown, T, Gunawan, C, Amal, R & Scott, JA 2023, 'Nanoscale Titanium Surface Engineering via Low-Temperature Hydrothermal Etching for Enhanced Antimicrobial Properties.', ACS Appl Mater Interfaces, vol. 15, no. 39, pp. 46247-46260. Bioinspired nanotopography artificially fabricated on titanium surfaces offers a solution for the rising issue of postoperative infections within orthopedics. On a small scale, hydrothermal etching has proven to deliver an effective antimicrobial nanospike surface. However, translation to an industrial setting is limited by the elevated synthesis temperature (150 °C) and associated equipment requirements. Here, for the first time, we fabricate surface nanostructures using comparatively milder synthesis temperatures (75 °C), which deliver physicochemical properties and antimicrobial capability comparable to the high-temperature surface. Using a KOH etchant, the simultaneous formation of titania and titanate crystals at both temperatures produces a one-dimensional nanostructure array. Analysis indicated that the formation mechanism comprises dissolution and reprecipitation processes, identifying the deposited titanates as hydrated layered tetra-titanates (K2Ti4O9·nH2O). A proposed nanospike formation mechanism was confirmed through the identification of a core and outer shell for individual nanostructures, primarily comprised of titanates and titania, respectively. Etching conditions dictated crystalline formation, favoring a thicker titanate core for nanorods under higher synthesis temperatures and etchant concentrations. A bactericidal investigation showed the efficacy against Gram-negative bacteria for a representative low-temperature nanosurface (34.4 ± 14.4%) was comparable to the higher temperature nanosurface (34.0 ± 17.0%), illustrating the potential of low-temperature hydrothermal synthesis. Our results provide valuable insight into the applicability of low-temperature etching protocols that are more favorable in large-scale manufacturing settings. Morelato, M, Cadola, L, Bérubé, M, Ribaux, O & Baechler, S 2023, 'Forensic intelligence teaching and learning in higher education: An international approach', Forensic Science International, vol. 344, pp. 111575-111575. Morshedi Rad, D, Hansen, WP, Zhand, S, Cranfield, C & Ebrahimi Warkiani, M 2023, 'A hybridized mechano-electroporation technique for efficient immune cell engineering', Journal of Advanced Research. Mugunthan, S, Wong, LL, Winnerdy, FR, Summers, S, Bin Ismail, MH, Foo, YH, Jaggi, TK, Meldrum, OW, Tiew, PY, Chotirmall, SH, Rice, SA, Phan, AT, Kjelleberg, S & Seviour, T 2023, 'RNA is a key component of extracellular DNA networks in Pseudomonas aeruginosa biofilms.', Nat Commun, vol. 14, no. 1, p. 7772. The extracellular matrix of bacterial biofilms consists of diverse components including polysaccharides, proteins and DNA. Extracellular RNA (eRNA) can also be present, contributing to the structural integrity of biofilms. However, technical difficulties related to the low stability of RNA make it difficult to understand the precise roles of eRNA in biofilms. Here, we show that eRNA associates with extracellular DNA (eDNA) to form matrix fibres in Pseudomonas aeruginosa biofilms, and the eRNA is enriched in certain bacterial RNA transcripts. Degradation of eRNA associated with eDNA led to a loss of eDNA fibres and biofilm viscoelasticity. Compared with planktonic and biofilm cells, the biofilm matrix was enriched in specific mRNA transcripts, including lasB (encoding elastase). The mRNA transcripts colocalised with eDNA fibres in the biofilm matrix, as shown by single molecule inexpensive FISH microscopy (smiFISH). The lasB mRNA was also observed in eDNA fibres in a clinical sputum sample positive for P. aeruginosa. Thus, our results indicate that the interaction of specific mRNAs with eDNA facilitates the formation of viscoelastic networks in the matrix of Pseudomonas aeruginosa biofilms. Muhammad, I, Ahmed, S, Cao, H, Mahmood, A & Wang, Y-G 2023, 'Three-Dimensional Silicene-Based Materials: A Universal Anode for Monovalent and Divalent Ion Batteries', The Journal of Physical Chemistry C, vol. 127, no. 2, pp. 1198-1208. Muhammad, I, Ahmed, S, Cao, H, Yao, Z, Khan, D, Mahmood, A, Hussain, T, Xiong, X-G, Ahuja, R & Wang, Y-G 2023, '3D porous sulfur-graphdiyne with splendid electrocatalytic and energy storage application', Materials Today Chemistry, vol. 34, pp. 101756-101756. Mullens, BG, Nicholas, MK, Marlton, FP, Brand, HEA, Gu, Q, Maynard-Casely, HE & Kennedy, BJ 2023, 'Long-range A-site cation disorder in NaA(MO4)2 (M = Mo, W) double scheelite oxides', Journal of Solid State Chemistry, vol. 321, pp. 123871-123871. Mullens, BG, Saura-Múzquiz, M, Marlton, FP, Avdeev, M, Brand, HEA, Mondal, S, Vaitheeswaran, G & Kennedy, BJ 2023, 'Beyond the ionic radii: A multifaceted approach to understand differences between the structures of LnNbO4 and LnTaO4 fergusonites', Journal of Alloys and Compounds, vol. 930, pp. 167399-167399. Murray, BR, Hawthorne, T, Curran, TJ, Krix, DW, Wallace, MI, Young, K, Murray, ML, Morley, E, Huber-Smith, N & Webb, JK 2023, 'Shoot flammability patterns among plant species of the wildland–urban interface in the fire-prone Greater Blue Mountains World Heritage Area', International Journal of Wildland Fire, vol. 32, no. 7, pp. 1119-1134. Murrihy, RC, Drysdale, SAO, Dedousis-Wallace, A, Rémond, L, McAloon, J, Ellis, DM, Halldorsdottir, T, Greene, RW & Ollendick, TH 2023, 'Community-Delivered Collaborative and Proactive Solutions and Parent Management Training for Oppositional Youth: A Randomized Trial', Behavior Therapy, vol. 54, no. 2, pp. 400-417. Nazari, H, Shrestha, J, Naei, VY, Bazaz, SR, Sabbagh, M, Thiery, JP & Warkiani, ME 2023, 'Advances in TEER measurements of biological barriers in microphysiological systems', Biosensors and Bioelectronics, vol. 234, pp. 115355-115355. Neuteboom, W, Ross, A, Bugeja, L, Willis, S, Roux, C & Lothridge, K 2023, 'Quality Management in forensic science: A closer inspection', Forensic Science International, pp. 111779-111779. Nguyen, HM, Ruocco, M, Dattolo, E, Cassetti, FP, Calvo, S, Tomasello, A, Marín‐Guirao, L, Pernice, M & Procaccini, G 2023, 'Signs of local adaptation by genetic selection and isolation promoted by extreme temperature and salinity in the Mediterranean seagrass Posidonia oceanica', Molecular Ecology, vol. 32, no. 15, pp. 4313-4328. Nguyen, LN, Vu, MT, Vu, HP, Johir, MAH, Labeeuw, L, Ralph, PJ, Mahlia, TMI, Pandey, A, Sirohi, R & Nghiem, LD 2023, 'Microalgae-based carbon capture and utilization: A critical review on current system developments and biomass utilization', Critical Reviews in Environmental Science and Technology, vol. 53, no. 2, pp. 216-238. Nguyen, LT, Pollock, CA & Saad, S 2023, 'Nutrition and Developmental Origins of Kidney Disease', Nutrients, vol. 15, no. 19, pp. 4207-4207. Nickovic, S, Petković, S, Ilić, L, Pejanović, G, Mijić, Z, Huete, A & Marks, G 2023, 'Prediction of airborne pollen and sub-pollen particles for thunderstorm asthma outbreaks assessment', Science of The Total Environment, vol. 864, pp. 160879-160879. Nielsen, S, Barratt, M, Hiley, S, Bartlett, M, Latimer, J, Jauncey, M, Roux, C, Morelato, M, Clark, N, Kowalski, M, Gilbert, M, Francia, L, Shipton, A, Gerostamoulos, D, Glowacki, L & Lam, T 2023, 'Monitoring for fentanyl within Australian supervised injecting facilities: Findings from feasibility testing of novel methods and collaborative workshops', International Journal of Drug Policy, vol. 115, pp. 104015-104015. Nonahal, M, Horder, J, Gale, A, Ding, L, Li, C, Hennessey, M, Ha, ST, Toth, M & Aharonovich, I 2023, 'Deterministic Fabrication of a Coupled Cavity–Emitter System in Hexagonal Boron Nitride', Nano Letters, vol. 23, no. 14, pp. 6645-6650. Nonahal, M, Li, C, Ren, H, Spencer, L, Kianinia, M, Toth, M & Aharonovich, I 2023, 'Engineering Quantum Nanophotonic Components from Hexagonal Boron Nitride', Laser & Photonics Reviews, vol. 17, no. 8. Noorian, P, Hoque, MM, Espinoza-Vergara, G & McDougald, D 2023, 'Environmental Reservoirs of Pathogenic Vibrio spp. and Their Role in Disease: The List Keeps Expanding', pp. 99-126. O’Connell, MJ, Fowler, AM, Allan, SJ, Beretta, GA & Booth, DJ 2023, 'Subtropical coral expansion into SE Australia: a haven for both temperate and expatriating tropical reef fishes', Coral Reefs. Ochwada-Doyle, F, Hughes, J, Fowler, AM, Murphy, J, Stark, K, Lowry, M, West, L & Taylor, MD 2023, 'Quantifying the potential impact of reducing recreational harvest limits on the catch of a key marine species using off-site angler survey data', ICES Journal of Marine Science, vol. 80, no. 2, pp. 295-307. Oktar, FN, Unal, S, Gunduz, O, Nissan, BB, Macha, IJ, Akyol, S, Duta, L, Ekren, N, Altan, E & Yetmez, M 2023, 'Correction to: Marine-derived bioceramics for orthopedic, reconstructive and dental surgery applications', Journal of the Australian Ceramic Society, vol. 59, no. 1, pp. 267-267. Oktar, FN, Unal, S, Gunduz, O, Nissan, BB, Macha, IJ, Akyol, S, Duta, L, Ekren, N, Altan, E & Yetmez, M 2023, 'Marine-derived bioceramics for orthopedic, reconstructive and dental surgery applications', Journal of the Australian Ceramic Society, vol. 59, no. 1, pp. 57-81. Ortega, JS, Corrales-Orovio, R, Ralph, P, Egaña, JT & Gentile, C 2023, 'Photosynthetic microorganisms for the oxygenation of advanced 3D bioprinted tissues', Acta Biomaterialia, vol. 165, pp. 180-196. Otsuka, Y, Ben-Nissan, B, Kono, H, Sasaki, T & Kikuchi, M 2023, 'Mechanochemical synthesis and characterization of strontium substituted apatite for biomedical application', Open Ceramics, vol. 16, pp. 100459-100459. Otsuka, Y, Sasaki, D, Kusamori, K, Nishikawa, M & Ben-Nissan, B 2023, 'Investigation of the crystallinity change after the addition of magnesium hydroxides into the calcium phosphate during mechanochemical synthesis: an FTIR spectroscopy, XRD analysis, chemometrics, and cell culture', Journal of the Australian Ceramic Society, vol. 59, no. 5, pp. 1373-1380. Pan, Y, Peng, D, Chen, JM, Myneni, RB, Zhang, X, Huete, AR, Fu, YH, Zheng, S, Yan, K, Yu, L, Zhu, P, Shen, M, Ju, W, Zhu, W, Xie, Q, Huang, W, Chen, Z, Huang, J & Wu, C 2023, 'Climate-driven land surface phenology advance is overestimated due to ignoring land cover changes', Environmental Research Letters, vol. 18, no. 4, pp. 044045-044045. Patel, VK, Vishwas, S, Kumar, R, De, RG, Shukla, SD, Paudel, KR, Manandhar, B, Singh, TG, Chellappan, DK, Gulati, M, Kaur, IP, Allam, VSRR, Hansbro, PM, Oliver, BG, MacLoughlin, R, Singh, SK & Dua, K 2023, 'Tackling the cytokine storm using advanced drug delivery in allergic airway disease', Journal of Drug Delivery Science and Technology, vol. 82, pp. 104366-104366. Patro, M, Duggin, IG, Albers, S-V & Ithurbide, S 2023, ''Influence of plasmids, selection markers and auxotrophic mutations on Haloferax volcanii cell shape plasticity'.', Front Microbiol, vol. 14, p. 1270665. Haloferax volcanii and other Haloarchaea can be pleomorphic, adopting different shapes, which vary with growth stages. Several studies have shown that H. volcanii cell shape is sensitive to various external factors including growth media and physical environment. In addition, several studies have noticed that the presence of a recombinant plasmid in the cells is also a factor impacting H. volcanii cell shape, notably by favoring the development of rods in early stages of growth. Here we investigated the reasons for this phenomenon by first studying the impact of auxotrophic mutations on cell shape in strains that are commonly used as genetic backgrounds for selection during strain engineering (namely: H26, H53, H77, H98, and H729) and secondly, by studying the effect of the presence of different plasmids containing selection markers on the cell shape of these strains. Our study showed that most of these auxotrophic strains have variation in cell shape parameters including length, aspect ratio, area and circularity and that the plasmid presence is impacting these parameters too. Our results indicated that ΔhdrB strains and hdrB selection markers have the most influence on H. volcanii cell shape, in addition to the sole presence of a plasmid. Finally, we discuss limitations in studying cell shape in H. volcanii and make recommendations based on our results for improving reproducibility of such studies. Paudel, KR, Manandhar, B, Singh, S, Gupta, G, Hansbro, P, Chellappan, DK & Dua, K 2023, 'Cytotoxic mechanisms of berberine-phytantriol liquid crystalline nanoparticles against non-small-cell lung cancer', EXCLI Journal : Experimental and Clinical Sciences, vol. 22, pp. 516-519. Paudel, KR, Rajput, R, De, RG, Raju, AVSR, Williams, K, Singh, SK, Gupta, G, Salunke, P, Hansbro, PM, Gerlach, J & Dua, K 2023, 'In vitro anti-cancer activity of a polyherbal preparation, VEDICINALS®9, against A549 human lung adenocarcinoma cells', Pathology - Research and Practice, vol. 250, pp. 154832-154832. Pitiyarachchi, O, Lee, YC, Sim, H-W, Srirangan, S, Mapagu, C, Kirk, J, Harnett, PR, Balleine, RL, Bowtell, DDL, Samimi, G, Brand, AH, Marsh, DJ, Beale, P, Anderson, L, Bouantoun, N, Provan, P, INOVATe, I, Ramus, SJ, DeFazio, A & Friedlander, M 2023, 'Older age should not be a barrier to testing for somatic variants in homologous recombination DNA repair-related genes in patients with high-grade serous ovarian carcinoma.', Transl Oncol, vol. 31, pp. 101638-101638. BACKGROUND: Somatic pathogenic variants (PVs) in homologous recombination DNA repair (HR)-related genes found in high-grade serous ovarian carcinomas (HGSC) are not well-characterised in older patients (≥70 years). This may reflect low testing rates in older patients. METHODS: Data from 1210 HGSC patients in AACR Project GENIE and 324 patients in an independent dataset INOVATe were analysed. Cases where somatic variants could be distinguished from germline variants were included, and analysis was restricted to those with a somatic TP53 variant, to ensure cases were HGSC. RESULTS: Of 1210 patients in GENIE, 27% (n = 325) were aged ≥70 years at testing. Patients with somatic-only PVs in BRCA2 were older compared with BRCA1 (median 71 vs 60 years, p = 0.002). Median age for 21 patients with somatic-only PVs in 11 other HR-related genes ranged from 40 to 67 years. In older patients, 7% (n = 22) had somatic BRCA1/2 PVs, and 1% (n = 2) had PVs other HR-related genes; this rate was not significantly different to younger patients (<70 years), 7% (n = 62) BRCA1/2 and 2% (n = 19) other HR-related genes (p = 0.36). The overall frequency of somatic BRCA1/2 PVs was similar in INOVATe (n = 25; 7.7%) and somatic-only BRCA2 PVs were again found in older patients compared with BRCA1 (median age: at testing, 70 vs 63 years; at diagnosis, 68 vs 60 years). CONCLUSIONS: The overall frequency of somatic-only PVs in HR-related genes was similar in older and younger patients with HGSC, highlighting the importance of somatic testing irrespective of age. Limiting somatic testing by age may exclude patients who could benefit from maintenance poly(ADP-ribose) polymerase (PARP) inhibitors. Piwczyński, M, Granjon, L, Trzeciak, P, Carlos Brito, J, Oana Popa, M, Daba Dinka, M, Johnston, NP & Boratyński, Z 2023, 'Unraveling phylogenetic relationships and species boundaries in the arid adapted Gerbillus rodents (Muridae: Gerbillinae) by RAD-seq data', Molecular Phylogenetics and Evolution, vol. 189, pp. 107913-107913. Platen, E & Tappe, S 2023, 'No arbitrage and multiplicative special semimartingales', Advances in Applied Probability, vol. 55, no. 3, pp. 1033-1074. Pokhrel, A, Dinh, H, Li, L, Hassan, KA, Cain, AK & Paulsen, IT 2023, 'Identification of a Novel LysR Family Transcriptional Regulator Controlling Acquisition of Sulfur Sources in <i>Acinetobacter baumannii</i>', Microbial Physiology, pp. 27-35. Pouwels, SD, van, DBM, Vasse, GF, Timens, W, Brandsma, C-A, Aliee, H, Hiemstra, PS, Guryev, V & Faiz, A 2023, 'Smoking increases expression of the SARS-CoV-2 spike protein-binding long ACE2 isoform in bronchial epithelium.', Respir Res, vol. 24, no. 1, p. 130. After more than two years the COVID-19 pandemic, that is caused by infection with the respiratory SARS-CoV-2 virus, is still ongoing. The risk to develop severe COVID-19 upon SARS-CoV-2 infection is increased in individuals with a high age, high body mass index, and who are smoking. The SARS-CoV-2 virus infects cells of the upper respiratory tract by entering these cells upon binding to the Angiotensin-converting enzyme 2 (ACE2) receptor. ACE2 is expressed in various cell types in the lung but the expression is especially high in goblet and ciliated cells. Recently, it was shown that next to its full-length isoform, ACE2 also has a short isoform. The short isoform is unable to bind SARS-CoV-2 and does not facilitate viral entry. In the current study we investigated whether active cigarette smoking increases the expression of the long or the short ACE2 isoform. We showed that in active smokers the expression of the long, active isoform, but not the short isoform of ACE2 is higher compared to never smokers. Additionally, it was shown that the expression of especially the long, active isoform of ACE2 was associated with secretory, club and goblet epithelial cells. This study increases our understanding of why current smokers are more susceptible to SARS-CoV-2 infection, in addition to the already established increased risk to develop severe COVID-19. Power, T, Kennedy, P, Chen, H, Martinez-Maldonado, R, McGregor, C, Johnson, A, Townsend, L & Hayes, C 2023, 'Learning to Manage De-escalation Through Simulation: An Exploratory Study', Clinical Simulation in Nursing, vol. 77, pp. 23-29. Prakash, S & Lin, G 2023, 'Multiphysics of microfluidics and nanofluidics', Journal of Applied Physics, vol. 133, no. 12, pp. 120401-120401. Prasad, E, Atwood, L, van Oorschot, RAH, McNevin, D, Barash, M & Raymond, J 2023, 'Trace DNA recovery rates from firearms and ammunition as revealed by casework data', Australian Journal of Forensic Sciences, vol. 55, no. 1, pp. 73-88. Price, OF, Mikac, K, Wilson, N, Roberts, B, Critescu, RH, Gallagher, R, Mallee, J, Donatiou, P, Webb, J, Keith, DA, Letnic, M & Mackenzie, BDE 2023, 'Short‐term impacts of the 2019–20 fire season on biodiversity in eastern Australia', Austral Ecology, vol. 48, no. 1, pp. 3-11. Price, S, Kuzhiumparambil, U, Pernice, M, Herdean, A & Ralph, P 2023, 'Enhancement of cyanobacterial PHB production using random chemical mutagenesis with detection through FACS', Bioprocess and Biosystems Engineering, vol. 46, no. 2, pp. 297-306. Prity, FT, Tobin, LA, Maharajan, R, Paulsen, IT, Cain, AK & Hamidian, M 2023, 'The evolutionary tale of eight novel plasmids in a colistin-resistant environmental Acinetobacter baumannii isolate.', Microb Genom, vol. 9, no. 5, p. mgen001010. Acinetobacter baumannii is an important opportunistic pathogen known for its high levels of resistance to many antibiotics, particularly those considered last resorts such as colistin and carbapenems. Plasmids of this organism are increasingly associated with the spread of clinically important antibiotic resistance genes. Although A. baumannii is a ubiquitous organism, to date, most of the focus has been on studying strains recovered from clinical samples ignoring those isolated in the environment (soil, water, food, etc.). Here, we analysed the genetic structures of eight novel plasmids carried by an environmental colistin-resistant A. baumannii (strain E-072658) recovered in a recycled fibre pulp in a paper mill in Finland. It was shown that E-072658 carries a new variant of the mcr-4 colistin resistance gene (mcr-4.7) in a novel Tn3-family transposon (called Tn6926) carried by a novel plasmid p8E072658. E-072658 is also resistant to sulphonamide compounds; consistent with this, the sul2 sulphonamide resistance gene was found in a pdif module. E-072658 also carries six additional plasmids with no antibiotic resistance genes, but they contained several pdif modules shared with plasmids carried by clinical strains. Detailed analysis of the genetic structure of all eight plasmids carried by E-072658 showed a complex evolutionary history revealing genetic exchange events within the genus Acinetobacter beyond the clinical or environmental origin of the strains. This work provides evidence that environmental strains might act as a source for some of the clinically significant antibiotic resistance genes. Qiao, L, Fang, L, Lv, Q, Xu, S, Jia, F, Wu, W, Picozzi, S, Pyatakov, AP, Reimers, JR & Ren, W 2023, 'Predicting layered itinerant magnetic Fe3SiSe2 with spontaneous valley polarization', Journal of Applied Physics, vol. 133, no. 20. Qu, J, Cao, X, Gao, L, Li, J, Li, L, Xie, Y, Zhao, Y, Zhang, J, Wu, M & Liu, H 2023, 'Electrochemical Carbon Dioxide Reduction to Ethylene: From Mechanistic Understanding to Catalyst Surface Engineering', Nano-Micro Letters, vol. 15, no. 1. Quinteros, SL, von, KE, Snyder, NW, Tanaka, A, O'Brien, B & Donnelly, S 2023, 'The helminth derived peptide FhHDM-1 redirects macrophage metabolism towards glutaminolysis to regulate the pro-inflammatory response.', Front Immunol, vol. 14, p. 1018076. We have previously identified an immune modulating peptide, termed FhHDM-1, within the secretions of the liver fluke, Fasciola hepatica, which is sufficiently potent to prevent the progression of type 1 diabetes and multiple sclerosis in murine models of disease. Here, we have determined that the FhHDM-1 peptide regulates inflammation by reprogramming macrophage metabolism. Specifically, FhHDM-1 switched macrophage metabolism to a dependence on oxidative phosphorylation fuelled by fatty acids and supported by the induction of glutaminolysis. The catabolism of glutamine also resulted in an accumulation of alpha ketoglutarate (α-KG). These changes in metabolic activity were associated with a concomitant reduction in glycolytic flux, and the subsequent decrease in TNF and IL-6 production at the protein level. Interestingly, FhHDM-1 treated macrophages did not express the characteristic genes of an M2 phenotype, thereby indicating the specific regulation of inflammation, as opposed to the induction of an anti-inflammatory phenotype per se. Use of an inactive derivative of FhHDM-1, which did not modulate macrophage responses, revealed that the regulation of immune responses was dependent on the ability of FhHDM-1 to modulate lysosomal pH. These results identify a novel functional association between the lysosome and mitochondrial metabolism in macrophages, and further highlight the significant therapeutic potential of FhHDM-1 to prevent inflammation. Quiroz, M, Nott, DJ & Kohn, R 2023, 'Gaussian Variational Approximations for High-dimensional State Space Models', Bayesian Analysis, vol. 18, no. 3. Radfar, P, Ding, L, Es, HA & Warkiani, ME 2023, 'A Microfluidic Approach for Enrichment and Single-Cell Characterization of Circulating Tumor Cells from Peripheral Blood', pp. 141-150. Rahman, MA, Mamun, SMN, Hossain, AKMA & Ton-That, C 2023, 'ZnO Nanorods on Li-Doped ZnO Thin Films for Efficient p–n Homojunction Light-Emitting Diodes', ACS Applied Nano Materials, vol. 6, no. 17, pp. 15757-15763. Rahman, MK, Umashankar, B, Choucair, H, Pazderka, C, Bourget, K, Chen, Y, Dunstan, CR, Rawling, T & Murray, M 2023, 'Inclusion of the in-chain sulfur in 3-thiaCTU increases the efficiency of mitochondrial targeting and cell killing by anticancer aryl-urea fatty acids', European Journal of Pharmacology, vol. 939, pp. 175470-175470. Rangel Pinagé, E, Bell, DM, Longo, M, Silva, CA, Csillik, O & Huete, A 2023, 'Surface Energy Dynamics and Canopy Structural Properties in Intact and Disturbed Forests in the Southern Amazon', Journal of Geophysical Research: Biogeosciences, vol. 128, no. 9. Rangsrikitphoti, P, Marquez-Garban, DC, Pietras, RJ, McGowan, E & Boonyaratanakornkit, V 2023, 'Sex steroid hormones and DNA repair regulation: Implications on cancer treatment responses', The Journal of Steroid Biochemistry and Molecular Biology, vol. 227, pp. 106230-106230. Rathnayake, SNH, Ditz, B, Willemse, BWM, Timens, W, Kooistra, W, Heijink, IH, Oliver, BGG, van den Berge, M, Faiz, A, Aliee, H, Theis, FJ & Nawijn, MC 2023, 'Longitudinal Effects of 1-Year Smoking Cessation on Human Bronchial Epithelial Transcriptome', CHEST, vol. 164, no. 1, pp. 85-89. Rayamajhee, B, Williams, NLR, Siboni, N, Rodgers, K, Willcox, M, Henriquez, FL, Seymour, JR, Potts, J, Johnson, C, Scanes, P & Carnt, N 2023, 'Identification and quantification of Acanthamoeba spp. within seawater at four coastal lagoons on the east coast of Australia', Science of The Total Environment, vol. 901, pp. 165862-165862. Razavi Bazaz, S, Zhand, S, Salomon, R, Beheshti, EH, Jin, D & Warkiani, ME 2023, 'ImmunoInertial microfluidics: A novel strategy for isolation of small EV subpopulations', Applied Materials Today, vol. 30, pp. 101730-101730. Rebej, M, Juřena, T, Vondál, J, Fuente Herraiz, D, Červený, J & Jegla, Z 2023, 'Numerical simulations and validation of single- and two-phase flow in a stirred lab-scale photobioreactor', Biosystems Engineering, vol. 230, pp. 35-50. Reddy, KD & Oliver, BGG 2023, 'Sexual dimorphism in chronic respiratory diseases', Cell & Bioscience, vol. 13, no. 1, p. 47. Reimers, JR & Low, PJ 2023, 'Molecular electronics: an Australian perspective', Australian Journal of Chemistry, vol. 76, no. 9, pp. 559-580. Rennie, C, Huang, Y, Siwakoti, P, Du, Z, Padula, M, Bao, G, Tuch, BE, Xu, X & McClements, L 2023, 'In vitro evaluation of a hybrid drug-delivery nanosystem for fibrosis prevention in cell therapy for Type 1 diabetes', Nanomedicine, vol. 18, no. 1, pp. 53-66. Rey Gomez, LM, Hirani, R, Care, A, Inglis, DW & Wang, Y 2023, 'Emerging Microfluidic Devices for Sample Preparation of Undiluted Whole Blood to Enable the Detection of Biomarkers', ACS Sensors, vol. 8, no. 4, pp. 1404-1421. Robertson, IO, Scholten, SC, Singh, P, Healey, AJ, Meneses, F, Reineck, P, Abe, H, Ohshima, T, Kianinia, M, Aharonovich, I & Tetienne, J-P 2023, 'Detection of Paramagnetic Spins with an Ultrathin van der Waals Quantum Sensor', ACS Nano, vol. 17, no. 14, pp. 13408-13417. Rodrigues, JS, Kovács, L, Lukeš, M, Höper, R, Steuer, R, Červený, J, Lindberg, P & Zavřel, T 2023, 'Characterizing isoprene production in cyanobacteria – Insights into the effects of light, temperature, and isoprene on Synechocystis sp. PCC 6803', Bioresource Technology, vol. 380, pp. 129068-129068. Rouet, R, Henry, JY, Johansen, MD, Sobti, M, Balachandran, H, Langley, DB, Walker, GJ, Lenthall, H, Jackson, J, Ubiparipovic, S, Mazigi, O, Schofield, P, Burnett, DL, Brown, SHJ, Martinello, M, Hudson, B, Gilroy, N, Post, JJ, Kelleher, A, Jäck, H-M, Goodnow, CC, Turville, SG, Rawlinson, WD, Bull, RA, Stewart, AG, Hansbro, PM & Christ, D 2023, 'Broadly neutralizing SARS-CoV-2 antibodies through epitope-based selection from convalescent patients.', Nat Commun, vol. 14, no. 1, p. 687. Emerging variants of concern (VOCs) are threatening to limit the effectiveness of SARS-CoV-2 monoclonal antibodies and vaccines currently used in clinical practice; broadly neutralizing antibodies and strategies for their identification are therefore urgently required. Here we demonstrate that broadly neutralizing antibodies can be isolated from peripheral blood mononuclear cells of convalescent patients using SARS-CoV-2 receptor binding domains carrying epitope-specific mutations. This is exemplified by two human antibodies, GAR05, binding to epitope class 1, and GAR12, binding to a new epitope class 6 (located between class 3 and 5). Both antibodies broadly neutralize VOCs, exceeding the potency of the clinical monoclonal sotrovimab (S309) by orders of magnitude. They also provide prophylactic and therapeutic in vivo protection of female hACE2 mice against viral challenge. Our results indicate that exposure to SARS-CoV-2 induces antibodies that maintain broad neutralization against emerging VOCs using two unique strategies: either by targeting the divergent class 1 epitope in a manner resistant to VOCs (ACE2 mimicry, as illustrated by GAR05 and mAbs P2C-1F11/S2K14); or alternatively, by targeting rare and highly conserved epitopes, such as the new class 6 epitope identified here (as illustrated by GAR12). Our results provide guidance for next generation monoclonal antibody development and vaccine design. Rourke, ML, Walburn, JW, Broadhurst, MK, Fowler, AM, Hughes, JM, Fielder, DS, DiBattista, JD & Furlan, EM 2023, 'Poor utility of environmental DNA for estimating the biomass of a threatened freshwater teleost; but clear direction for future candidate assessments', Fisheries Research, vol. 258, pp. 106545-106545. Roy, CP, Hastak, P, DeMaere, M, Wyrsch, E, Li, D, Elankumaran, P, Dolejska, M, Browning, GF, Marenda, MS, Gottlieb, T, Cheong, E, Merlino, J, Myers, GSA & Djordjevic, SP 2023, 'Phylogenomic analysis of a global collection of Escherichia coli ST38: evidence of interspecies and environmental transmission?', mSystems, vol. 8, no. 5, p. e0123622. We performed a comprehensive phylogenomic analysis of 925 extraintestinal pathogenic Escherichia coli (ExPEC) ST38 genomes from 38 countries and diverse hosts and sources. The phylogeny resolved two broad clades: A (593 strains; 91% human) and B (332 isolates; 42% human), each with distinct ST38 clusters linked to the carriage of specific bla CTX-M alleles, often in association with other antibiotic resistance genes, class 1 integrons and specific plasmid replicon types. Co-carriage of fyuA and irp2 virulence genes, a reliable proxy for carriage of the Yersinia high-pathogenicity island, featured in 580 (62.7%) genomes. ST38 lineages carrying combinations of ExPEC and intestinal pathogenic Escherichia coli virulence factors were also identified. The F plasmid replicon was identified in 536 (58%) genomes, and 112 of these (21%) carry cjrABC-senB, a virulence operon frequently identified in pandemic ExPEC sequence types. Most (108; 96.4%) cjrABC-senB+ ST38 isolates were from human and other sources, except food animals, and were associated with F5:A-:B10 (41 isolates), F1:A2:B20 (20 isolates), and F24:A-:B1 (15 isolates) F replicon types. ST38 genomes that were inferred to carry a ColV-F virulence plasmid (69; 7.4%) were mostly from human (12; 17.4%), avian (26; 37.7%), or poultry (10; 6.9%) sources. We identified multiple examples of putative inter-host and host-environment transmission events, where genomes differed by <35 SNPs. This work emphasizes the importance of adopting a One Health approach for phylogenomic studies that seek to improve understanding of antimicrobial resistance and pathogen evolution. IMPORTANCE Extraintestinal pathogenic Escherichia coli (ExPEC) sequence type (ST) 38 is one of the top 10 human pandemic lineages. Although a major cause of urinary tract and blood stream infections, ST38 has been poorly characterized from a global phylogenomic perspective. A comprehensive genome-scale analysis of 925 ST38 isolate genomes identified ... Russell, K, Kelty, SF & Scudder, N 2023, 'Public and family support and concerns for providing DNA to law enforcement in long-term missing person cases', Science & Justice, vol. 63, no. 2, pp. 149-157. Russell, K, Kelty, SF & Scudder, N 2023, 'Public/family concerns for providing DNA in missing persons cases: Paper 2: The main concerns raised and implications for policing policy', Science & Justice, vol. 63, no. 6, pp. 671-679. Ryan, TAJ, Hooftman, A, Rehill, AM, Johansen, MD, Brien, ECO, Toller-Kawahisa, JE, Wilk, MM, Day, EA, Weiss, HJ, Sarvari, P, Vozza, EG, Schramm, F, Peace, CG, Zotta, A, Miemczyk, S, Nalkurthi, C, Hansbro, NG, McManus, G, O'Doherty, L, Gargan, S, Long, A, Dunne, J, Cheallaigh, CN, Conlon, N, Carty, M, Fallon, PG, Mills, KHG, Creagh, EM, Donnell, JSO, Hertzog, PJ, Hansbro, PM, McLoughlin, RM, Wygrecka, M, Preston, RJS, Zasłona, Z & O'Neill, LAJ 2023, 'Dimethyl fumarate and 4-octyl itaconate are anticoagulants that suppress Tissue Factor in macrophages via inhibition of Type I Interferon.', Nat Commun, vol. 14, no. 1, p. 3513. Excessive inflammation-associated coagulation is a feature of infectious diseases, occurring in such conditions as bacterial sepsis and COVID-19. It can lead to disseminated intravascular coagulation, one of the leading causes of mortality worldwide. Recently, type I interferon (IFN) signaling has been shown to be required for tissue factor (TF; gene name F3) release from macrophages, a critical initiator of coagulation, providing an important mechanistic link between innate immunity and coagulation. The mechanism of release involves type I IFN-induced caspase-11 which promotes macrophage pyroptosis. Here we find that F3 is a type I IFN-stimulated gene. Furthermore, F3 induction by lipopolysaccharide (LPS) is inhibited by the anti-inflammatory agents dimethyl fumarate (DMF) and 4-octyl itaconate (4-OI). Mechanistically, inhibition of F3 by DMF and 4-OI involves suppression of Ifnb1 expression. Additionally, they block type I IFN- and caspase-11-mediated macrophage pyroptosis, and subsequent TF release. Thereby, DMF and 4-OI inhibit TF-dependent thrombin generation. In vivo, DMF and 4-OI suppress TF-dependent thrombin generation, pulmonary thromboinflammation, and lethality induced by LPS, E. coli, and S. aureus, with 4-OI additionally attenuating inflammation-associated coagulation in a model of SARS-CoV-2 infection. Our results identify the clinically approved drug DMF and the pre-clinical tool compound 4-OI as anticoagulants that inhibit TF-mediated coagulopathy via inhibition of the macrophage type I IFN-TF axis. Ryan, TAJ, Hooftman, A, Rehill, AM, Johansen, MD, O', BEC, Toller-Kawahisa, JE, Wilk, MM, Day, EA, Weiss, HJ, Sarvari, P, Vozza, EG, Schramm, F, Peace, CG, Zotta, A, Miemczyk, S, Nalkurthi, C, Hansbro, NG, McManus, G, O'Doherty, L, Gargan, S, Long, A, Dunne, J, Cheallaigh, CN, Conlon, N, Carty, M, Fallon, PG, Mills, KHG, Creagh, EM, O', DJS, Hertzog, PJ, Hansbro, PM, McLoughlin, RM, Wygrecka, M, Preston, RJS, Zasłona, Z & O'Neill, LAJ 2023, 'Publisher Correction: Dimethyl fumarate and 4-octyl itaconate are anticoagulants that suppress Tissue Factor in macrophages via inhibition of Type I Interferon', Nat Commun, vol. 14, no. 1, p. 4374. The original version of this Article contained an error in the spelling of the surname for the author Luke A J O’Neill, which was incorrectly given as ‘O’ Neill’ with an additional space. This has now been corrected in both the PDF and HTML versions of the Article. Saerens, G, Dursap, T, Hesner, I, Duong, NMH, Solntsev, AS, Morandi, A, Maeder, A, Karvounis, A, Regreny, P, Chapman, RJ, Danescu, A, Chauvin, N, Penuelas, J & Grange, R 2023, 'Background-Free Near-Infrared Biphoton Emission from Single GaAs Nanowires', Nano Letters, vol. 23, no. 8, pp. 3245-3250. Safaei, J, Gao, Y, Hosseinpour, M, Zhang, X, Sun, Y, Tang, X, Zhang, Z, Wang, S, Guo, X, Wang, Y, Chen, Z, Zhou, D, Kang, F, Jiang, L & Wang, G 2023, 'Vacancy Engineering for High-Efficiency Nanofluidic Osmotic Energy Generation', Journal of the American Chemical Society, vol. 145, no. 4, pp. 2669-2678. Salih, AK, Phillips, MR & Ton-That, C 2023, 'Enhanced solar-driven water splitting performance using oxygen vacancy rich ZnO photoanodes', Solar Energy Materials and Solar Cells, vol. 259, pp. 112436-112436. Sarebani, Z, Chegini, V, Chen, H, Aali, E, Mirzadeh, M, Abbaspour, M, Griffiths, MD & Alimoradi, Z 2023, 'Effect of vitamin D vaginal suppository on sexual functioning among postmenopausal women: A three-arm randomized controlled clinical trial', Obstetrics & Gynecology Science, vol. 66, no. 3, pp. 208-220. Sarebani, Z, Chegini, V, Chen, H, Aali, E, Mirzadeh, M, Abbaspour, M, Griffiths, MD & Alimoradi, Z 2023, 'Effect of vitamin D vaginal suppository on sexual functioning among postmenopausal women: A three-arm randomized controlled clinical trial.', Obstet Gynecol Sci, vol. 66, no. 5, pp. 462-462. Saunders, M, Gupta, A, Roux, C & Spindler, X 2023, 'The impact of substrate dampness on the transfer of glass fragments to upper garments when breaking windows', Forensic Science International, vol. 350, pp. 111791-111791. Saura-Múzquiz, M, Marlton, FP, Mullens, BG, Liu, J, Vogt, T, Maynard-Casely, HE, Avdeev, M, Blom, DA & Kennedy, BJ 2023, 'Cation and Lone Pair Order–Disorder in the Polymorphic Mixed Metal Bismuth Scheelite Bi3FeMo2O12', Chemistry of Materials, vol. 35, no. 1, pp. 123-135. Scanes, E & Byrne, M 2023, 'Warming and hypoxia threaten a valuable scallop fishery: A warning for commercial bivalve ventures in climate change hotspots', Global Change Biology, vol. 29, no. 8, pp. 2043-2045. Scanes, E, O’Connor, WA, Seymour, JR, Siboni, N, Parker, LM & Ross, PM 2023, 'Emerging diseases in Australian oysters and the challenges of climate change and uncertain futures', Australian Zoologist. Scanes, E, Ross, PM, Seymour, JR, Siboni, N, Dove, MC, O'Connor, WA, Dittes, C & Parker, LM 2023, 'Transgenerational transfer of the microbiome is altered by ocean acidification in oyster larvae', Aquaculture, vol. 565, pp. 739153-739153. Scanes, E, Siboni, N, Rees, B & Seymour, JR 2023, 'Acclimation in intertidal animals reduces potential pathogen load and increases survival following a heatwave', iScience, vol. 26, no. 6, pp. 106813-106813. Scaramuzzo, G, Nucera, F, Asmundo, A, Messina, R, Mari, M, Montanaro, F, Johansen, MD, Monaco, F, Fadda, G, Tuccari, G, Hansbro, NG, Hansbro, PM, Hansel, TT, Adcock, IM, David, A, Kirkham, P, Caramori, G, Volta, CA & Spadaro, S 2023, 'Cellular and molecular features of COVID-19 associated ARDS: therapeutic relevance.', J Inflamm (Lond), vol. 20, no. 1, p. 11. The severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2) infection can be asymptomatic or cause a disease (COVID-19) characterized by different levels of severity. The main cause of severe COVID-19 and death is represented by acute (or acute on chronic) respiratory failure and acute respiratory distress syndrome (ARDS), often requiring hospital admission and ventilator support.The molecular pathogenesis of COVID-19-related ARDS (by now termed c-ARDS) is still poorly understood. In this review we will discuss the genetic susceptibility to COVID-19, the pathogenesis and the local and systemic biomarkers correlated with c-ARDS and the therapeutic options that target the cell signalling pathways of c-ARDS. Schlögl, E, Skov, JB & Skovmand, D 2023, 'Term Structure Modeling of SOFR: Evaluating the Importance of Scheduled Jumps'. Schoepf, V, Baumann, JH, Barshis, DJ, Browne, NK, Camp, EF, Comeau, S, Cornwall, CE, Guzmán, HM, Riegl, B, Rodolfo-Metalpa, R & Sommer, B 2023, 'Corals at the edge of environmental limits: A new conceptual framework to re-define marginal and extreme coral communities', Science of The Total Environment, vol. 884, pp. 163688-163688. Seong, M, Kondaveeti, S, Choi, G, Kim, S, Kim, J, Kang, M & Jeong, HE 2023, '3D Printable Self-Adhesive and Self-Healing Ionotronic Hydrogels for Wearable Healthcare Devices', ACS Applied Materials & Interfaces, vol. 15, no. 8, pp. 11042-11052. Shahnaij, M, Amin, MB, Hoque, MM, Mondol, AS, Rana, KJ, Azmi, IJ & Talukder, KA 2023, 'Characterization of Shigella flexneri Serotype 6 Strains Isolated from Bangladesh and Identification of a New Phylogenetic Cluster', Journal of Bacteriology, vol. 205, no. 4. Shao, D, Su, F, Zou, X, Lu, J, Wu, S, Tian, R, Ran, D, Guo, Z & Jin, D 2023, 'Pixel-Level Classification of Five Histologic Patterns of Lung Adenocarcinoma', Analytical Chemistry, vol. 95, no. 5, pp. 2664-2670. Sharapova, PR, Kruk, SS & Solntsev, AS 2023, 'Nonlinear Dielectric Nanoresonators and Metasurfaces: Toward Efficient Generation of Entangled Photons', Laser & Photonics Reviews, vol. 17, no. 4, pp. 2200408-2200408. Shi, J, Xu, Z, Pei, C, Zhang, D, Sun, B & Ni, S 2023, 'Carbon doping switching on the fast reaction kinetics of advanced LiVO3 for lithium ion battery', Journal of Alloys and Compounds, vol. 937, pp. 168473-168473. Shrestha, J, Paudel, KR, Nazari, H, Dharwal, V, Bazaz, SR, Johansen, MD, Dua, K, Hansbro, PM & Warkiani, ME 2023, 'Advanced models for respiratory disease and drug studies.', Med Res Rev, vol. 43, no. 5, pp. 1470-1503. The global burden of respiratory diseases is enormous, with many millions of people suffering and dying prematurely every year. The global COVID-19 pandemic witnessed recently, along with increased air pollution and wildfire events, increases the urgency of identifying the most effective therapeutic measures to combat these diseases even further. Despite increasing expenditure and extensive collaborative efforts to identify and develop the most effective and safe treatments, the failure rates of drugs evaluated in human clinical trials are high. To reverse these trends and minimize the cost of drug development, ineffective drug candidates must be eliminated as early as possible by employing new, efficient, and accurate preclinical screening approaches. Animal models have been the mainstay of pulmonary research as they recapitulate the complex physiological processes, Multiorgan interplay, disease phenotypes of disease, and the pharmacokinetic behavior of drugs. Recently, the use of advanced culture technologies such as organoids and lung-on-a-chip models has gained increasing attention because of their potential to reproduce human diseased states and physiology, with clinically relevant responses to drugs and toxins. This review provides an overview of different animal models for studying respiratory diseases and evaluating drugs. We also highlight recent progress in cell culture technologies to advance integrated models and discuss current challenges and present future perspectives. Shrestha, J, Paudel, KR, Nazari, H, Dharwal, V, Bazaz, SR, Johansen, MD, Dua, K, Hansbro, PM & Warkiani, ME 2023, 'Front Cover Image, Volume 43, Issue 5', Medicinal Research Reviews, vol. 43, no. 5, pp. i-i. Sikkema, L, Ramírez-Suástegui, C, Strobl, DC, Gillett, TE, Zappia, L, Madissoon, E, Markov, NS, Zaragosi, L-E, Ji, Y, Ansari, M, Arguel, M-J, Apperloo, L, Banchero, M, Bécavin, C, Berg, M, Chichelnitskiy, E, Chung, M-I, Collin, A, Gay, ACA, Gote-Schniering, J, Hooshiar, KB, Inecik, K, Jain, M, Kapellos, TS, Kole, TM, Leroy, S, Mayr, CH, Oliver, AJ, von, PM, Peter, L, Taylor, CJ, Walzthoeni, T, Xu, C, Bui, LT, De, DC, Dony, L, Faiz, A, Guo, M, Gutierrez, AJ, Heumos, L, Huang, N, Ibarra, IL, Jackson, ND, Kadur, LMP, Lotfollahi, M, Tabib, T, Talavera-López, C, Travaglini, KJ, Wilbrey-Clark, A, Worlock, KB, Yoshida, M, Lung, BNC, van, DBM, Bossé, Y, Desai, TJ, Eickelberg, O, Kaminski, N, Krasnow, MA, Lafyatis, R, Nikolic, MZ, Powell, JE, Rajagopal, J, Rojas, M, Rozenblatt-Rosen, O, Seibold, MA, Sheppard, D, Shepherd, DP, Sin, DD, Timens, W, Tsankov, AM, Whitsett, J, Xu, Y, Banovich, NE, Barbry, P, Duong, TE, Falk, CS, Meyer, KB, Kropski, JA, Pe'er, D, Schiller, HB, Tata, PR, Schultze, JL, Teichmann, SA, Misharin, AV, Nawijn, MC, Luecken, MD & Theis, FJ 2023, 'An integrated cell atlas of the lung in health and disease.', Nat Med, vol. 29, no. 6, pp. 1563-1577. Single-cell technologies have transformed our understanding of human tissues. Yet, studies typically capture only a limited number of donors and disagree on cell type definitions. Integrating many single-cell datasets can address these limitations of individual studies and capture the variability present in the population. Here we present the integrated Human Lung Cell Atlas (HLCA), combining 49 datasets of the human respiratory system into a single atlas spanning over 2.4 million cells from 486 individuals. The HLCA presents a consensus cell type re-annotation with matching marker genes, including annotations of rare and previously undescribed cell types. Leveraging the number and diversity of individuals in the HLCA, we identify gene modules that are associated with demographic covariates such as age, sex and body mass index, as well as gene modules changing expression along the proximal-to-distal axis of the bronchial tree. Mapping new data to the HLCA enables rapid data annotation and interpretation. Using the HLCA as a reference for the study of disease, we identify shared cell states across multiple lung diseases, including SPP1+ profibrotic monocyte-derived macrophages in COVID-19, pulmonary fibrosis and lung carcinoma. Overall, the HLCA serves as an example for the development and use of large-scale, cross-dataset organ atlases within the Human Cell Atlas. Siwakoti, P, Rennie, C, Huang, Y, Li, JJ, Tuch, BE, McClements, L & Xu, X 2023, 'Challenges with Cell-based Therapies for Type 1 Diabetes Mellitus', Stem Cell Reviews and Reports, vol. 19, no. 3, pp. 601-624. Smith, HS, Irga, PJ, Fleck, R & Torpy, FR 2023, 'Portable botanical biofilters to address internal combustion engine exhaust exposure', Building and Environment, vol. 244, pp. 110777-110777. Song, A, Song, S, Duanmu, M, Tian, H, Liu, H, Qin, X, Shao, G & Wang, G 2023, 'Recent Progress of Non‐Noble Metallic Heterostructures for the Electrocatalytic Hydrogen Evolution', Small Science, vol. 3, no. 9. Song, P, Li, J, Zhang, Y, Tang, F, Wang, C, Su, D & Wang, T 2023, 'Design of double-shelled NiS-FeS@NC hollow nanocubes for high-performance sodium-ion batteries', Journal of Alloys and Compounds, vol. 950, pp. 169905-169905. Song, P, Yang, J, Wang, C, Wang, T, Gao, H, Wang, G & Li, J 2023, 'Interface Engineering of Fe7S8/FeS2 Heterostructure in situ Encapsulated into Nitrogen-Doped Carbon Nanotubes for High Power Sodium-Ion Batteries', Nano-Micro Letters, vol. 15, no. 1. Song, Y, Zhao, H, Zi, Y, Qiu, J, Song, Z, Bai, X, Liao, J & Yang, Z 2023, 'X-ray-Irradiation-Induced Discoloration and Persistent Radioluminescence for Reversible Dual-Mode Imaging and Detection Applications', ACS Energy Letters, vol. 8, no. 5, pp. 2232-2240. Speer, MS & Leslie, LM 2023, 'Application of Machine Learning Techniques to Detect and Understand the Impacts of Global Warming on Southeast Australia', Georgetown Journal of International Affairs, vol. 24, no. 2, pp. 260-266. Stackowicz, J, Gillis, CM, Godon, O, Iannascoli, B, Conde, E, Leveque, E, Worrall, WPM, Galli, SJ, Bruhns, P, Reber, LL & Jönsson, F 2023, 'Conditional neutrophil depletion challenges their contribution to mouse models of anaphylaxis', Allergy, vol. 78, no. 10, pp. 2767-2770. Steiner, R, Moret, S & Roux, C 2023, 'Production of artificial fingermarks. Part II – The use of a modified inkjet printer for the deposition of synthetic secretions', Forensic Science International, vol. 350, pp. 111804-111804. Stelling-Wood, TP, Gribben, PE, Birch, G, Bishop, MJ, Blount, C, Booth, DJ, Brown, C, Bruce, E, Bugnot, AB, Byrne, M, Creese, RG, Dafforn, KA, Dahlenburg, J, Doblin, MA, Fellowes, TE, Fowler, AM, Gibbs, MC, Glamore, W, Glasby, TM, Hay, AC, Kelaher, B, Knott, NA, Larkum, AWD, Parker, LM, Marzinelli, EM, Mayer-Pinto, M, Morgan, B, Murray, SA, Rees, MJ, Ross, PM, Roughan, M, Saintilan, N, Scanes, E, Seymour, JR, Schaefer, N, Suthers, IM, Taylor, MD, Williamson, JE, Concejo, AV, Whittington, RJ & Figueira, WF 2023, 'Gamay (Botany Bay, Australia): What we know and still need to know about this highly modified coastal waterway?', Marine and Freshwater Research, vol. 74, no. 12, pp. 1003-1025. Strudwick, P, Seymour, J, Camp, EF, Roper, C, Edmondson, J, Howlett, L & Suggett, DJ 2023, 'Bacterial communities associated with corals out-planted on the Great Barrier Reef are inherently dynamic over space and time', Marine Biology, vol. 170, no. 7. Su, Y, Hu, X, Kang, Y, Zhang, C, Cheng, YY, Jiao, Z, Nie, Y & Song, K 2023, 'Curcumin nanoparticles combined with 3D printed bionic tumor models for breast cancer treatment', Biofabrication, vol. 15, no. 1, pp. 014105-014105. Suggett, DJ, Edwards, M, Cotton, D, Hein, M & Camp, EF 2023, 'An integrative framework for sustainable coral reef restoration', One Earth, vol. 6, no. 6, pp. 666-681. Sun, B, Zhang, Q, Xu, W, Zhao, R, Zhang, C, Guo, J, Zhu, H, Yuan, G, Lv, W, Li, X & Yang, N 2023, 'Edge-enriched and S-doped carbon nanorods to accelerate electrochemical kinetics of sodium/potassium storage', Carbon, vol. 201, pp. 776-784. Sun, B, Zhang, T, Song, L & Zhang, L 2023, 'Correlation between secondary γ′ and high-temperature tensile behavior of a powder metallurgy nickel-based superalloy EP962NP', Materials Science and Engineering: A, vol. 866, pp. 144687-144687. Sun, B, Zhang, T, Song, L & Zhang, L 2023, 'Oxidation behavior in static air and its effect on tensile properties of a powder metallurgy EP962NP nickel-based superalloy', Journal of Alloys and Compounds, vol. 934, pp. 167795-167795. Suzzi, AL, Stat, M, Gaston, TF, Siboni, N, Williams, NLR, Seymour, JR & Huggett, MJ 2023, 'Elevated estuary water temperature drives fish gut dysbiosis and increased loads of pathogenic vibrionaceae', Environmental Research, vol. 219, pp. 115144-115144. Szpila, K, Piwczyński, M, Glinkowski, W, Lutz, L, Akbarzadeh, K, Baz, A, Johnston, NP & Grzywacz, A 2023, 'First molecular phylogeny and species delimitation of West Palaearctic Pollenia (Diptera: Polleniidae)', Zoological Journal of the Linnean Society, vol. 197, no. 1, pp. 267-282. Tan, TH, Zhang, H, Xie, B, Mann, R, Peng, L, Yun, SLJ, Amal, R, Gu, Z & Gunawan, C 2023, 'Hydroxyl Radical Generating Monovalent Copper Particles for Antimicrobial Application', Journal of Nanomaterials, vol. 2023, pp. 1-10. The antimicrobial properties of copper are well-known but maintaining a low oxidation state of Cu in particles is difficult. Herein, antimicrobial CuxP particles were synthesized through phosphorization of Cu(OH)2, to lock copper in its monovalent state (as Cu3P). We found that the phosphorization could be achieved at temperatures as low as 200°C, with stable surface presence of Cu(I) on the resulting CuxP particles. Cu(I) can act as a one-electron reducing agent for molecular oxygen, to generate the highly reactive hydroxyl radical. In this study, CuxP displayed antibacterial activities on the Gram-positive Staphylococcus aureus and Gram-negative Escherichia coli, with minimum inhibitory concentrations of 32 mg/L for the highest temperature particles (350°C) on both model bacteria. The evident membrane damage is consistent with the intended hydroxyl radical bacterial targeting mechanism. Low-temperature CuxP, although exhibiting lower antibacterial efficacies than those of the higher temperature variant, still showed competitive growth inhibiting activities when compared to other reported antimicrobial copper-based particles. The present work showcases advancements in particle technology that can lead to the development of a more robust antimicrobial agent, presenting a potent additive for self-disinfection applications. Tang, Q, Xue, N, Ding, X, Tsai, KH-Y, Hew, JJ, Jiang, R, Huang, R, Cheng, X, Ding, X, Yee Cheng, Y, Chen, J & Wang, Y 2023, 'Role of wound microbiome, strategies of microbiota delivery system and clinical management', Advanced Drug Delivery Reviews, vol. 192, pp. 114671-114671. Tang, S-J, Zhang, M, Sun, J, Meng, J-W, Xiong, X, Gong, Q, Jin, D, Yang, Q-F & Xiao, Y-F 2023, 'Single-particle photoacoustic vibrational spectroscopy using optical microresonators', Nature Photonics, vol. 17, no. 11, pp. 951-956. Tang, Y, Ma, S, Lin, S, Wu, Y, Chen, S, Liu, G, Ma, L, Wang, Z, Jiang, L & Wang, Y 2023, 'Cell-free protein synthesis of CD1E and B2M protein and in vitro interaction', Protein Expression and Purification, vol. 203, pp. 106209-106209. Tanvet, C, Camp, EF, Sutton, J, Houlbrèque, F, Thouzeau, G & Rodolfo‐Metalpa, R 2023, 'Corals adapted to extreme and fluctuating seawater Tapas, MJ, Thomas, P, Vessalas, K, Nsiah-Baafi, E, Martin, L & Sirivivatnanon, V 2023, 'Comparative study of the efficacy of fly ash and reactive aggregate powders in mitigating alkali-silica reaction', Journal of Building Engineering, vol. 63, pp. 105571-105571. Thakur, S, Satija, S, Srivastava, N & Khurana, N 2023, 'HPTLC Method for Boswellic Acids', Current Trends in Biotechnology and Pharmacy, vol. 17, no. 3, pp. 997-1003. Boswelliic acids (BAs) are derived from the Boswellia serrata oleo gum resin and used as potential anti-inflammatory, pituitary, immu-nomodulatory, and antitumor experts. The aim of the current study is to evaluate KBA and AKBA separately by high performance thin film chromatography (HPTLC) in Boswellia serrata. For the simultaneous quantification of boswellic acids, an HPTLC method was employed; 11-ke-to-β-boswellic acid (KBA) and 3-acetyl-11-ke-to-β-boswellic acid (AKBA) at 254 nm. Thaler, M, Wang, Y, van der Does, AM, Faiz, A, Ninaber, DK, Ogando, NS, Beckert, H, Taube, C, Salgado-Benvindo, C, Snijder, EJ, Bredenbeek, PJ, Hiemstra, PS & van Hemert, MJ 2023, 'Impact of Changes in Human Airway Epithelial Cellular Composition and Differentiation on SARS-CoV-2 Infection Biology', Journal of Innate Immunity, pp. 562-580. Thanh, NL, Nguyet, NLH, Le, VG, Thuy, NT, Phong, VHN, Que, VNX, Hang, VT & Huy, NN 2023, 'Optimization process for enhancing the recovery of ammonium and phosphate from wastewater by modified rice husk biochar', Engineering and Applied Science Research, vol. 50, no. 2, pp. 185-194. This study aimed to optimize the recovery of ammonium and phosphate from wastewater using Mg-modified biochar as an adsorbent. Given the situation of domestic wastewater and agricultural waste in Vietnam, the researchers fabricated biochar from rice husk and modified it with magnesium salt to make it an effective material for wastewater treatment. To determine the optimal conditions for the experiments, the response surface methodology was used, specifically the central composite design (CCD) model with four factors, namely biochar dosage (g/L), pH, N:P ratio, and initial concentrations of NH4+ and PO43-. The material was thoroughly characterized using scanning electron microscopy (SEM), Fourier-transform infrared spectroscopy (FTIR), energy-dispersive X-ray spectroscopy (EDS), and X-ray diffraction (XRD) to ensure that it met the desired specifications. Based on the experimental design, the optimal conditions were determined to be a biochar dosage of 0.12 g/L, an N:P ratio of 1.25, an initial concentration of 60 mg/L, and a pH of 6. Tests conducted in synthetic wastewater produced results that were in agreement with the predicted values. However, when the optimized values were tested in domestic wastewater, only phosphate removal showed good agreement with an efficiency of 93% compared to the predicted optimization value of 88%. This study demonstrates the potential of Mg-modified biochar as an effective adsorbent for recovering ammonium and phosphate from wastewater. Although further optimization may be required for ammonium removal in domestic wastewater, the results are promising and warrant further investigation. Thurn, B, Schotsmans, EMJ & Ueland, M 2023, 'Lime and odour: A preliminary investigation into the effect of hydrated lime on the volatiles emitted from human remains', Forensic Science International, pp. 111745-111745. Tian, C, Li, X-Y, Nelson, VE, Ou, P, Zhou, D, Chen, Y, Zhang, J, Huang, JE, Wang, N, Yu, J, Liu, H, Liu, C, Yang, Y, Peng, T, Zhao, Y, Lee, B-H, Wang, S, Shirzadi, E, Chen, Z, Miao, RK, Sinton, D & Sargent, EH 2023, 'Paired Electrosynthesis of H2 and Acetic Acid at A/cm2 Current Densities', ACS Energy Letters, vol. 8, no. 10, pp. 4096-4103. Tian, H, Song, A, Zhang, P, Sun, K, Wang, J, Sun, B, Fan, Q, Shao, G, Chen, C, Liu, H, Li, Y & Wang, G 2023, 'High Durability of Fe–N–C Single‐Atom Catalysts with Carbon Vacancies toward the Oxygen Reduction Reaction in Alkaline Media', Advanced Materials, vol. 35, no. 14, pp. 2210714-2210714. Tran, T, Ho-Le, T, Bliuc, D, Abrahamsen, B, Hansen, L, Vestergaard, P, Center, JR & Nguyen, TV 2023, ''Skeletal Age' for mapping the impact of fracture on mortality.', Elife, vol. 12, p. e83888. BACKGROUND: Fragility fracture is associated with an increased risk of mortality, but mortality is not part of doctor-patient communication. Here, we introduce a new concept called 'Skeletal Age' as the age of an individual's skeleton resulting from a fragility fracture to convey the combined risk of fracture and fracture-associated mortality for an individual. METHODS: We used the Danish National Hospital Discharge Register which includes the whole-country data of 1,667,339 adults in Denmark born on or before January 1, 1950, who were followed up to December 31, 2016 for incident low-trauma fracture and mortality. Skeletal age is defined as the sum of chronological age and the number of years of life lost (YLL) associated with a fracture. Cox's proportional hazards model was employed to determine the hazard of mortality associated with a specific fracture for a given risk profile, and the hazard was then transformed into YLL using the Gompertz law of mortality. RESULTS: During the median follow-up period of 16 years, there had been 307,870 fractures and 122,744 post-fracture deaths. A fracture was associated with between 1 and 7 years of life lost, with the loss being greater in men than women. Hip fractures incurred the greatest loss of life years. For instance, a 60-year-old individual with a hip fracture is estimated to have a skeletal age of 66 for men and 65 for women. Skeletal Age was estimated for each age and fracture site stratified by gender. CONCLUSIONS: We propose 'Skeletal Age' as a new metric to assess the impact of a fragility fracture on an individual's life expectancy. This approach will enhance doctor-patient risk communication about the risks associated with osteoporosis. FUNDING: National Health and Medical Research Council in Australia and Amgen Competitive Grant Program 2019. Tran, TN, Gale, A, Whitefield, B, Dyakonov, V, Toth, M, Aharonovich, I & Kianinia, M 2023, 'Coupling spin defects in hexagonal boron nitride to a microwave cavity', Applied Physics Letters, vol. 123, no. 3. Travis, G, McGowan, EM, Simpson, AM, Marsh, DJ & Nassif, NT 2023, 'PTEN, PTENP1, microRNAs, and ceRNA Networks: Precision Targeting in Cancer Therapeutics.', Cancers (Basel), vol. 15, no. 20, pp. 4954-4954. The phosphatase and tensin homolog deleted on chromosome 10 (PTEN) is a well characterised tumour suppressor, playing a critical role in the maintenance of fundamental cellular processes including cell proliferation, migration, metabolism, and survival. Subtle decreases in cellular levels of PTEN result in the development and progression of cancer, hence there is tight regulation of the expression, activity, and cellular half-life of PTEN at the transcriptional, post-transcriptional, and post-translational levels. PTENP1, the processed pseudogene of PTEN, is an important transcriptional and post-transcriptional regulator of PTEN. PTENP1 expression produces sense and antisense transcripts modulating PTEN expression, in conjunction with miRNAs. Due to the high sequence similarity between PTEN and the PTENP1 sense transcript, the transcripts possess common miRNA binding sites with the potential for PTENP1 to compete for the binding, or 'sponging', of miRNAs that would otherwise target the PTEN transcript. PTENP1 therefore acts as a competitive endogenous RNA (ceRNA), competing with PTEN for the binding of specific miRNAs to alter the abundance of PTEN. Transcription from the antisense strand produces two functionally independent isoforms (PTENP1-AS-α and PTENP1-AS-β), which can regulate PTEN transcription. In this review, we provide an overview of the post-transcriptional regulation of PTEN through interaction with its pseudogene, the cellular miRNA milieu and operation of the ceRNA network. Furthermore, its importance in maintaining cellular integrity and how disruption of this PTEN-miRNA-PTENP1 axis may lead to cancer but also provide novel therapeutic opportunities, is discussed. Precision targeting of PTENP1-miRNA mediated regulation of PTEN may present as a viable alternative therapy. Tripathi, A, Zalogina, A, Liao, J, Wurdack, M, Estrecho, E, Zhou, J, Jin, D, Kruk, SS & Kivshar, Y 2023, 'Metasurface-Controlled Photonic Rashba Effect for Upconversion Photoluminescence', Nano Letters, vol. 23, no. 6, pp. 2228-2232. Tu, J, Li, W, Hansbro, PM, Yan, Q, Bai, X, Donovan, C, Kim, RY, Galvao, I, Das, A, Yang, C, Zou, J & Diwan, A 2023, 'Smoking and tetramer tryptase accelerate intervertebral disc degeneration by inducing METTL14-mediated DIXDC1 m6 modification.', Mol Ther, vol. 31, no. 8, pp. 2524-2542. Although cigarette smoking (CS) and low back pain (LBP) are common worldwide, their correlations and the mechanisms of action remain unclear. We have shown that excessive activation of mast cells (MCs) and their proteases play key roles in CS-associated diseases, like asthma, chronic obstructive pulmonary disease (COPD), blood coagulation, and lung cancer. Previous studies have also shown that MCs and their proteases induce degenerative musculoskeletal disease. By using a custom-designed smoke-exposure mouse system, we demonstrated that CS results in intervertebral disc (IVD) degeneration and release of MC-restricted tetramer tryptases (TTs) in the IVDs. TTs were found to regulate the expression of methyltransferase 14 (METTL14) at the epigenetic level by inducing N6-methyladenosine (m6A) deposition in the 3' untranslated region (UTR) of the transcript that encodes dishevelled-axin (DIX) domain-containing 1 (DIXDC1). That reaction increases the mRNA stability and expression of Dixdc1. DIXDC1 functionally interacts with disrupted in schizophrenia 1 (DISC1) to accelerate the degeneration and senescence of nucleus pulposus (NP) cells by activating a canonical Wnt pathway. Our study demonstrates the association between CS, MC-derived TTs, and LBP. These findings raise the possibility that METTL14-medicated DIXDC1 m6A modification could serve as a potential therapeutic target to block the development of degeneration of the NP in LBP patients. Tu, L, Wu, K, Luo, Y, Wang, E, Yuan, J, Zuo, J, Zhou, D, Li, B, Zhou, J, Jin, D & Zhang, H 2023, 'Significant Enhancement of the Upconversion Emission in Highly Er3+‐Doped Nanoparticles at Cryogenic Temperatures', Angewandte Chemie, vol. 135, no. 7. Tu, L, Wu, K, Luo, Y, Wang, E, Yuan, J, Zuo, J, Zhou, D, Li, B, Zhou, J, Jin, D & Zhang, H 2023, 'Significant Enhancement of the Upconversion Emission in Highly Er3+‐Doped Nanoparticles at Cryogenic Temperatures', Angewandte Chemie International Edition, vol. 62, no. 7. Tu, X, Gomez, HM, Kim, RY, Brown, AC, de, JE, Galvao, I, Faiz, A, Bosco, A, Horvat, JC, Hansbro, P & Donovan, C 2023, 'Airway and parenchyma transcriptomics in a house dust mite model of experimental asthma.', Respir Res, vol. 24, no. 1, p. 32. Lung transcriptomics studies in asthma have provided valuable information in the whole lung context, however, deciphering the individual contributions of the airway and parenchyma in disease pathogenesis may expedite the development of novel targeted treatment strategies. In this study, we performed transcriptomics on the airway and parenchyma using a house dust mite (HDM)-induced model of experimental asthma that replicates key features of the human disease. HDM exposure increased the expression of 3,255 genes, of which 212 were uniquely increased in the airways, 856 uniquely increased in the parenchyma, and 2187 commonly increased in both compartments. Further interrogation of these genes using a combination of network and transcription factor enrichment analyses identified several transcription factors that regulate airway and/or parenchymal gene expression, including transcription factor EC (TFEC), transcription factor PU.1 (SPI1), H2.0-like homeobox (HLX), metal response element binding transcription factor-1 (MTF1) and E74-like factor 4 (ets domain transcription factor, ELF4) involved in controlling innate immune responses. We next assessed the effects of inhibiting lung SPI1 responses using commercially available DB1976 and DB2313 on key disease outcomes. We found that both compounds had no protective effects on airway inflammation, however DB2313 (8 mg/kg) decreased mucus secreting cell number, and both DB2313 (1 mg/kg) and DB1976 (2.5 mg/kg and 1 mg/kg) reduced small airway collagen deposition. Significantly, both compounds decreased airway hyperresponsiveness. This study demonstrates that SPI1 is important in HDM-induced experimental asthma and that its pharmacological inhibition reduces HDM-induced airway collagen deposition and hyperresponsiveness. Ungolo, F, Garces, LP, Sherris, M & Zhou, Y 2023, 'Estimation, Comparison and Projection of Multi-factor Age-Cohort Affine Mortality Models'. Vaidya, S, Gao, X, Dikshit, S, Aharonovich, I & Li, T 2023, 'Quantum sensing and imaging with spin defects in hexagonal boron nitride', Advances in Physics: X, vol. 8, no. 1. van der Ploeg, EA, Faiz, A, Teitsma, G, Melgert, BN, Horvatovich, P, Burgess, JK & Gan, T 2023, '(1226) Serum Proteomics for Fibrotic Markers in Early Detection of Bronchiolitis Obliterans Syndrome after Lung Transplantation', The Journal of Heart and Lung Transplantation, vol. 42, no. 4, pp. S524-S524. van Oppen, MJH & Raina, J 2023, 'Coral holobiont research needs spatial analyses at the microbial scale', Environmental Microbiology, vol. 25, no. 1, pp. 179-183. Vanders, RL, Gomez, HM, Hsu, AC, Daly, K, Wark, PAB, Horvat, JC & Hansbro, PM 2023, 'Inflammatory and anti-viral responses to influenza A virus infection are dysregulated in pregnant mice with allergic airway disease.', Am J Physiol Lung Cell Mol Physiol, vol. 325, no. 3, pp. L385-L398. BACKGROUND: Influenza A virus (IAV) infections are increased during pregnancy especially with asthma as a comorbidity, leading to asthma exacerbations, secondary bacterial infections, intensive care unit admissions and mortality. OBJECTIVE: We aimed to define the processes involved in increased susceptibility and severity of IAV infections during pregnancy, especially with asthma Methods: We sensitised mice to house dust mite (HDM), induced pregnancy and challenged with HDM to induce allergic airway disease (AAD). Mid pregnancy, we induced IAV infection. We assessed viral titres, airway inflammation, lung anti-viral responses, mucus hyper-secretion and airway hyper-responsiveness (AHR). RESULTS: During early IAV infection, pregnant mice with AAD had increased mRNA expression of the inflammatory markers Il13 and IL17 and reduced mRNA expression of the neutrophil chemoattractant marker, Kc. These mice had increased mucous hyperplasia and increased AHR. miR155, miR574, miR223, and miR1187 were also reduced during early infection, as was mRNA expression of the anti-viral β-defensins, Bd1, Bd2, and Spd and IFNs, Ifnα, Ifnβ and Ifnλ. During late infection Il17 was still increased as was eosinophil infiltration in the lungs. mRNA expression of Kc was reduced, as was neutrophil infiltration and mRNA expression of the anti-viral markers Ifnβ, Ifnλ, Ifnγ and Ip10, Tlr3, Tlr9, Pkr and Mx1. Mucous hyperplasia was still significantly increased as was AHR. CONCLUSIONS AND CLINICAL RELEVANCE: Early phase IAV infection in pregnancy with asthma heightens underlying inflammatory asthmatic phenotype and reduces anti-viral responses. Verma, A, Hoppenrath, M, Smith, K, Murray, JS, Harwood, DT, Hosking, JM, Rongo, T, Rhodes, L & Murray, S 2023, 'Ostreopsis Schmidt and Coolia Meunier (Dinophyceae, Gonyaulacales) from Cook Islands and Niue (South Pacific Ocean), including description of Ostreopsis tairoto sp. nov.', Scientific Reports, vol. 13, no. 1, pp. 3110-3110. Vlaanderen, EJ, Ghaly, TM, Moore, LR, Focardi, A, Paulsen, IT & Tetu, SG 2023, 'Plastic leachate exposure drives antibiotic resistance and virulence in marine bacterial communities', Environmental Pollution, vol. 327, pp. 121558-121558. Vo, PHN, Buckley, T, Xu, X, Nguyen, TMH, Rudolph, V & Shukla, P 2023, 'Foam fractionation of per- and polyfluoroalkyl substances (PFASs) in landfill leachate using different cosurfactants', Chemosphere, vol. 310, pp. 136869-136869. Vo, PHN, Hamilton, BR, Wepf, RA, Key, TA, Nguyen, TMH, Thai, PK, Thomas, K & Mueller, JF 2023, 'Visualization of the Distribution of PFOS and PFHxS in Concrete by DESI MSI', Environmental Science & Technology Letters, vol. 10, no. 5, pp. 446-451. Vo, PHN, Key, TA, Le, TH, McDonough, JT, Porman, S, Fiorenza, S, Nguyen, HTM, Dao, VTN, Mueller, JF & Thai, PK 2023, 'Evaluation of sealants to mitigate the release of per- and polyfluoroalkyl substances (PFAS) from AFFF-impacted concrete: Characterization and forecasting', Water Research X, vol. 20, pp. 100195-100195. Vo, PHN, Tscharke, B, Toft, S, Madsen, C, Nguyen, KQ, Nguyen, HTM, Bui, XT, Li, J & Thai, PK 2023, 'Spatiotemporal trends and impact of Covid-19 lockdown on eight sewage contaminants in Brisbane, Australia, from 2012 to 2020', Chemosphere, vol. 314, pp. 137702-137702. Wajahat, M, Kouzani, AZ, Khoo, SY & Mahmud, MAP 2023, 'Comparative study and multi-parameter analysis to optimize device structure of triboelectric nanogenerators', Nanotechnology, vol. 34, no. 42, pp. 425403-425403. Wang, CY, Wang, J, Zhang, L, Zhang, SW, Wang, L, Zhao, SZ, Chen, ZH, Zhang, X, Xie, M, Wang, T, Chen-Yu Hsu, A, Qin, L, Oliver, BG, Liu, L, Wan, HJ, Liu, D, Luo, FM, Li, WM & Wang, G 2023, 'Self-Reported Insufficient Sleep Is Associated With Clinical and Inflammatory Features of Asthma: A Prospective Cohort Study', The Journal of Allergy and Clinical Immunology: In Practice, vol. 11, no. 4, pp. 1200-1210.e4. Wang, D, Wang, Y, Di, X, Wang, F, Wanninayaka, A, Carnell, M, Hardeman, EC, Jin, D & Gunning, PW 2023, 'Cortical tension drug screen links mitotic spindle integrity to Rho pathway', Current Biology, vol. 33, no. 20, pp. 4458-4469.e4. Wang, J, Shangguan, P, Lin, M, Fu, L, Liu, Y, Han, L, Chen, S, Wang, X, Lu, M, Luo, Z, Zhong, Y, Shi, B & Bai, F 2023, 'Dual-Site Förster Resonance Energy Transfer Route of Upconversion Nanoparticles-Based Brain-Targeted Nanotheranostic Boosts the Near-Infrared Phototherapy of Glioma', ACS Nano, vol. 17, no. 17, pp. 16840-16853. Wang, J, Song, G, Liddell, M, Morellato, P, Lee, CKF, Yang, D, Alberton, B, Detto, M, Ma, X, Zhao, Y, Yeung, HCH, Zhang, H, Ng, M, Nelson, BW, Huete, A & Wu, J 2023, 'An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites', Remote Sensing of Environment, vol. 286, pp. 113429-113429. Wang, J, Zhang, X, Zhang, L, Liu, Y, Wang, G, Zhang, HP, Wang, L, Kang, DY, Oliver, BG, Wan, HJ, McDonald, VM, Chen-Yu Hsu, A, Liu, D, Li, WM, Birring, SS & Wang, G 2023, 'Age-Related Clinical Characteristics, Inflammatory Features, Phenotypes, and Treatment Response in Asthma', The Journal of Allergy and Clinical Immunology: In Practice, vol. 11, no. 1, pp. 210-219.e3. Wang, JJJ & Chan, JSK 2023, 'Stochastic modelling of volatility and inter-relationships in the Australian electricity markets', Communications in Statistics - Simulation and Computation, vol. 52, no. 8, pp. 3877-3896. Wang, L, Wang, R, Zheng, Q, Yao, X, Zhang, C, Fu, S, Wei, Z, Yun, K & Guo, Z 2023, 'Simulating dynamic interaction between diazepam and ethanol targeting the GABAA receptor via in silico model', NeuroToxicology, vol. 95, pp. 136-143. Wang, T, Gu, W, Yu, L, Guo, X, Yang, J, Sun, X, Guan, J, Zhou, L, Wang, C, Yao, H, Zhang, X & Wang, G 2023, 'MXene: An efficient hemoperfusion sorbent for the removal of uremic toxins', Journal of Materiomics, vol. 9, no. 6, pp. 1129-1140. Wang, Y, Ninaber, DK, Faiz, A, van, DLAC, van, SA, Lutter, R, Hiemstra, PS, van, DDAM & Ravi, A 2023, 'Acute cigarette smoke exposure leads to higher viral infection in human bronchial epithelial cultures by altering interferon, glycolysis and GDF15-related pathways.', Respir Res, vol. 24, no. 1, p. 207. BACKGROUND: Acute exacerbations of chronic inflammatory lung diseases, such as chronic obstructive pulmonary disease (COPD), are frequently associated with rhinovirus (RV) infections. Despite these associations, the pathogenesis of virus-induced exacerbations is incompletely understood. We aimed to investigate effects of cigarette smoke (CS), a primary risk factor for COPD, on RV infection in airway epithelium and identify novel mechanisms related to these effects. METHODS: Primary bronchial epithelial cells (PBEC) from COPD patients and controls were differentiated by culture at the air-liquid interface (ALI) and exposed to CS and RV-A16. Bulk RNA sequencing was performed using samples collected at 6 and 24 h post infection (hpi), and viral load, mediator and L-lactate levels were measured at 6, 24 and 48hpi. To further delineate the effect of CS on RV-A16 infection, we performed growth differentiation factor 15 (GDF15) knockdown, L-lactate and interferon pre-treatment in ALI-PBEC. We performed deconvolution analysis to predict changes in the cell composition of ALI-PBEC after the various exposures. Finally, we compared transcriptional responses of ALI-PBEC to those in nasal epithelium after human RV-A16 challenge. RESULTS: CS exposure impaired antiviral responses at 6hpi and increased viral replication at 24 and 48hpi in ALI-PBEC. At 24hpi, CS exposure enhanced expression of RV-A16-induced epithelial interferons, inflammation-related genes and CXCL8. CS exposure increased expression of oxidative stress-related genes, of GDF15, and decreased mitochondrial membrane potential. GDF15 knockdown experiments suggested involvement of this pathway in the CS-induced increase in viral replication. Expression of glycolysis-related genes and L-lactate production were increased by CS exposure, and was demonstrated to contribute to higher viral replication. No major differences were demonstrated between COPD and non-COPD-derived cultures. However, cellular deconvolu... Wang, Y, Sun, Q, Zhang, Y, Li, X, Liang, Q, Guo, R, Zhang, L, Han, X, Wang, J, Shao, L, Xue, Y, Yang, Y, Li, H, Nie, L, Shi, W, Liu, Q, Zhang, J, Duan, H, Huang, H, Luu, LDW, Tai, J, Yang, X & Wang, G 2023, 'Systemic immune dysregulation in severe tuberculosis patients revealed by a single-cell transcriptome atlas', Journal of Infection, vol. 86, no. 5, pp. 421-438. Wang, Y, Wang, X, Jia, X, Li, J, Fu, J, Huang, X, Cui, X, Wang, B, Luo, W, Lin, C, Li, Z, Luu, LDW, Li, S, Zhu, X & Tai, J 2023, 'Influenza vaccination features revealed by a single‐cell transcriptome atlas', Journal of Medical Virology, vol. 95, no. 1. Webster, J, Dadd‐Daigle, P, Chapman, TA & Kirkby, K 2023, 'Investigating the defoliating‐like (DL) VCG2A pathotype of Verticillium dahliae through identification and prediction of secreted proteins from genomes of Australian isolates', Plant Pathology, vol. 72, no. 2, pp. 334-341. Wei, X, Li, R, Li, X, Wang, B, Huang, J, Mu, H, Zhang, Q, Zhang, Z, Ru, Y, Wu, X, Qiu, Y, Ye, Y, Feng, Y, Wang, S, Chen, H, Yi, C & Wang, J 2023, 'iPSCs-derived mesenchymal stromal cells mitigate anxiety and neuroinflammation in aging female mice', The International Journal of Biochemistry & Cell Biology, vol. 155, pp. 106347-106347. Westlund, E, Bergenstråle, A, Pokhrel, A, Chan, H, Skoglund, U, Daley, DO & Söderström, B 2023, 'Application of nanotags and nanobodies for live cell single-molecule imaging of the Z-ring in Escherichia coli.', Curr Genet, vol. 69, no. 2-3, pp. 153-163. Understanding where proteins are localized in a bacterial cell is essential for understanding their function and regulation. This is particularly important for proteins that are involved in cell division, which localize at the division septum and assemble into highly regulated complexes. Current knowledge of these complexes has been greatly facilitated by super-resolution imaging using fluorescent protein fusions. Herein, we demonstrate with FtsZ that single-molecule PALM images can be obtained in-vivo using a genetically fused nanotag (ALFA), and a corresponding nanobody fused to mEos3.2. The methodology presented is applicable to other bacterial proteins. Weyermann, C, Willis, S, Margot, P & Roux, C 2023, 'Towards more relevance in forensic science research and development', Forensic Science International, vol. 348, pp. 111592-111592. Widjaja, M, Kim, RY & Donovan, C 2023, 'Hybridized face‐to‐face and online laboratory content in the time of Winskel-Wood, B, Padula, MP, Marks, DC & Johnson, L 2023, 'The phenotype of cryopreserved platelets influences the formation of platelet-leukocyte aggregates in an in vitro model', Platelets, vol. 34, no. 1. Wong, LL, Mugunthan, S, Kundukad, B, Ho, JCS, Rice, SA, Hinks, J, Seviour, T, Parikh, AN & Kjelleberg, S 2023, 'Microbial biofilms are shaped by the constant dialogue between biological and physical forces in the extracellular matrix', Environmental Microbiology, vol. 25, no. 1, pp. 199-208. Wong, WW, Wang, N, Esser, BD, Church, SA, Li, L, Lockrey, M, Aharonovich, I, Parkinson, P, Etheridge, J, Jagadish, C & Tan, HH 2023, 'Bottom-up, Chip-Scale Engineering of Low Threshold, Multi-Quantum-Well Microring Lasers', ACS Nano, vol. 17, no. 15, pp. 15065-15076. Woodward, H, Moret, S & Chadwick, S 2023, 'Biodegradable plastics and their impact on fingermark detection methods', Forensic Science International, vol. 344, pp. 111571-111571. Wu, S, Yang, Z, Ma, C, Zhang, X, Mi, C, Zhou, J, Guo, Z & Jin, D 2023, 'Deep learning enhanced NIR-II volumetric imaging of whole mice vasculature', Opto-Electronic Advances, vol. 6, no. 4, pp. 220105-220105. Xiang, K, Wang, B, Liu, DL, Chen, C, Waters, C, Huete, A & Yu, Q 2023, 'Probabilistic assessment of drought impacts on wheat yield in south-eastern Australia', Agricultural Water Management, vol. 284, pp. 108359-108359. Xiao, J, Xiao, Y, Li, J, Gong, C, Nie, X, Gao, H, Sun, B, Liu, H & Wang, G 2023, 'Advanced nanoengineering strategies endow high‐performance layered transition‐metal oxide cathodes for sodium‐ion batteries', SmartMat, vol. 4, no. 5. Xie, Q, Moore, CE, Cleverly, J, Hall, CC, Ding, Y, Ma, X, Leigh, A & Huete, A 2023, 'Land surface phenology indicators retrieved across diverse ecosystems using a modified threshold algorithm', Ecological Indicators, vol. 147, pp. 110000-110000. Xie, Y, Chen, X, Sun, K, Zhang, J, Lai, W, Liu, H & Wang, G 2023, 'Direct Oxygen‐Oxygen Cleavage through Optimizing Interatomic Distances in Dual Single‐atom Electrocatalysts for Efficient Oxygen Reduction Reaction', Angewandte Chemie International Edition, vol. 62, no. 17. Xie, Y, Chen, X, Sun, K, Zhang, J, Lai, W, Liu, H & Wang, G 2023, 'Direct Oxygen‐Oxygen Cleavage through Optimizing Interatomic Distances in Dual Single‐atom Electrocatalysts for Efficient Oxygen Reduction Reaction', Angewandte Chemie, vol. 135, no. 17. Xu, J, Li, H, Jin, Y, Zhou, D, Sun, B, Armand, M & Wang, G 2023, 'Understanding the Electrical Mechanisms in Aqueous Zinc Metal Batteries: from Electrostatic Interactions to Electric Field Regulation', Advanced Materials, p. e2309726. Xu, W, Zhao, R, Li, Q, Sun, B, Wu, J, Zhong, W, Gao, Y, Nan, X, Huang, Q, Yang, Y, Li, X, Yang, N & Zhang, Q 2023, 'Overall Water Splitting on The NiS/NiS2 Heterostructures Featuring Self‐Equilibrium Orbital Occupancy', Advanced Energy Materials, vol. 13, no. 31. Yaghoubi Naei, V, Bordhan, P, Mirakhorli, F, Khorrami, M, Shrestha, J, Nazari, H, Kulasinghe, A & Ebrahimi Warkiani, M 2023, 'Advances in novel strategies for isolation, characterization, and analysis of CTCs and ctDNA', Therapeutic Advances in Medical Oncology, vol. 15. Yamaguchi, A, Hoppenrath, M, Murray, S, Kretzschmar, AL, Horiguchi, T & Wakeman, KC 2023, 'Morphology and molecular phylogeny of the benthic dinoflagellates (Dinophyceae, Peridiniales) Amphidiniopsis crumena n. sp. and Amphidiniopsis nileribanjensis n. sp.', European Journal of Protistology, vol. 87, pp. 125940-125940. Yan, G, Sun, X, Zhang, Y, Li, H, Huang, H, Jia, B, Su, D & Ma, T 2023, 'Metal-Free 2D/2D van der Waals Heterojunction Based on Covalent Organic Frameworks for Highly Efficient Solar Energy Catalysis', Nano-Micro Letters, vol. 15, no. 1. Yang, J, Wang, T, Guo, X, Sheng, X, Li, J, Wang, C & Wang, G 2023, 'Flexible sodium-ion capacitors boosted by high electrochemically-reactive and structurally-stable Sb2S3 nanowire/Ti3C2Tx MXene film anodes', Nano Research, vol. 16, no. 4, pp. 5592-5600. Yang, J, Yin, B, Zhang, S, Sun, Y, Li, J, Su, D & Ma, T 2023, 'Macromolecules Promoting Robust Zinc Anode by Synergistic Coordination Effect and Charge Redistribution', Small, vol. 19, no. 45. Yang, X, Liang, B, Xue, D, Liang, J, Zaslawski, C & Chen, J 2023, 'Global research trends in acupuncture for cancer pain: A bibliometric analysis', Medicine, vol. 102, no. 41, pp. e34739-e34739. Yin, Y, Shi, L, Zhang, S, Duan, X, Zhang, J, Sun, H & Wang, S 2023, 'Two−dimensional nanomaterials confined single atoms: New opportunities for environmental remediation', Nano Materials Science, vol. 5, no. 1, pp. 15-38. York, E, McNaughton, DA, Duman, M-N, Gale, PA & Rawling, T 2023, 'Fatty Acid-Activated Proton Transport by Bisaryl Anion Transporters Depolarises Mitochondria and Reduces the Viability of MDA-MB-231 Breast Cancer Cells.', Biomolecules, vol. 13, no. 8, pp. 1202-1202. In respiring mitochondria, the proton gradient across the inner mitochondrial membrane is used to drive ATP production. Mitochondrial uncouplers, which are typically weak acid protonophores, can disrupt this process to induce mitochondrial dysfunction and apoptosis in cancer cells. We have shown that bisaryl urea-based anion transporters can also mediate mitochondrial uncoupling through a novel fatty acid-activated proton transport mechanism, where the bisaryl urea promotes the transbilayer movement of deprotonated fatty acids and proton transport. In this paper, we investigated the impact of replacing the urea group with squaramide, amide and diurea anion binding motifs. Bisaryl squaramides were found to depolarise mitochondria and reduce MDA-MB-231 breast cancer cell viability to similar extents as their urea counterpart. Bisaryl amides and diureas were less active and required higher concentrations to produce these effects. For all scaffolds, the substitution of the bisaryl rings with lipophilic electron-withdrawing groups was required for activity. An investigation of the proton transport mechanism in vesicles showed that active compounds participate in fatty acid-activated proton transport, except for a squaramide analogue, which was sufficiently acidic to act as a classical protonophore and transport protons in the absence of free fatty acids. Zavan, L, Fang, H, Johnston, EL, Whitchurch, C, Greening, DW, Hill, AF & Kaparakis‐Liaskos, M 2023, 'The mechanism of Pseudomonas aeruginosa outer membrane vesicle biogenesis determines their protein composition', PROTEOMICS, vol. 23, no. 10, pp. 2200464-2200464. Zhand, S, Zhu, Y, Nazari, H, Sadraeian, M, Warkiani, ME & Jin, D 2023, 'Correction to “Thiolate DNAzymes on Gold Nanoparticles for Isothermal Amplification and Detection of Mesothelioma-derived Exosomal PD-L1 mRNA”', Analytical Chemistry, vol. 95, no. 32, pp. 12193-12193. Zhand, S, Zhu, Y, Nazari, H, Sadraeian, M, Warkiani, ME & Jin, D 2023, 'Thiolate DNAzymes on Gold Nanoparticles for Isothermal Amplification and Detection of Mesothelioma-derived Exosomal PD-L1 mRNA.', Anal Chem, vol. 95, no. 6, pp. 3228-3237. Catalytic DNAzymes have been used for isothermal amplification and rapid detection of nucleic acids, holding the potential for point-of-care testing applications. However, when Subzymes (universal substrate and DNAzyme) are tethered to the polystyrene magnetic microparticles via biotin-streptavidin bonds, the residual free Subzymes are often detached from the microparticle surface, which causes a significant degree of false positives. Here, we attached dithiol-modified Subzyme to gold nanoparticle and improved the limit of detection (LoD) by 200 times compared to that using magnetic microparticles. As a proof of concept, we applied our new method for the detection of exosomal programed cell-death ligand 1 (PD-L1) RNA. As the classical immune checkpoint, molecule PD-L1, found in small extracellular vesicles (sEVs, traditionally called exosomes), can reflect the antitumor immune response for predicting immunotherapy response. We achieved the LoD as low as 50 fM in detecting both the RNA homologous to the PD-L1 gene and exosomal PD-L1 RNAs extracted from epithelioid and nonepithelioid subtypes of mesothelioma cell lines, which only takes 8 min of reaction time. As the first application of isothermal DNAzymes for detecting exosomal PD-L1 RNA, this work suggests new point-of-care testing potentials toward clinical translations. Zhang, C, Feng, J, Guo, X, Zhang, J, Zhang, W, Zhang, L, Song, J, Shao, G & Wang, G 2023, 'Blocking polysulfide by physical confinement and catalytic conversion of SiO2@MXene for Li–S battery', Applied Physics Letters, vol. 122, no. 19. Zhang, F, Su, Z, Li, Z, Zhu, Y, Gagrani, N, Li, Z, Lockrey, M, Li, L, Aharonovich, I, Lu, Y, Tan, HH, Jagadish, C & Fu, L 2023, 'High-speed multiwavelength InGaAs/InP quantum well nanowire array micro-LEDs for next generation optical communications', Opto-Electronic Science, vol. 2, no. 5, pp. 230003-230003. Zhang, H, Chen, Y, Hua, W, Gu, W, Zhuang, H, Li, H, Jiang, X, Mao, Y, Liu, Y, Jin, D & Bu, W 2023, 'Heterostructures with Built‐in Electric Fields for Long‐lasting Chemodynamic Therapy', Angewandte Chemie International Edition, vol. 62, no. 15. Zhang, H, Chen, Y, Hua, W, Gu, W, Zhuang, H, Li, H, Jiang, X, Mao, Y, Liu, Y, Jin, D & Bu, W 2023, 'Heterostructures with Built‐in Electric Fields for Long‐lasting Chemodynamic Therapy', Angewandte Chemie, vol. 135, no. 15. Zhang, L & Jin, D 2023, 'Cytometry and analytical methods in Zhang, L, Cao, C, Tay, SS, Chen, C, Macmillan, A, Wen, S, Jin, D, McCarroll, J & Stenzel, MH 2023, 'Exploring the Effect of Drug Loading on the Biological Fate of Polymer-Coated Solid Nanoparticles', Chemistry of Materials, vol. 35, no. 11, pp. 4471-4488. Zhang, L, Sun, B, Liu, Q, Song, L, Zhang, T & Duan, X 2023, 'Construction of a dense and N-rich solid electrolyte interface for dendrite-free lithium metal batteries', Journal of Power Sources, vol. 580, pp. 233391-233391. Zhang, Z, Cescatti, A, Wang, Y-P, Gentine, P, Xiao, J, Guanter, L, Huete, AR, Wu, J, Chen, JM, Ju, W, Peñuelas, J & Zhang, Y 2023, 'Large diurnal compensatory effects mitigate the response of Amazonian forests to atmospheric warming and drying', Science Advances, vol. 9, no. 21. Zhao, Y, Shen, Z, Huo, J, Cao, X, Ou, P, Qu, J, Nie, X, Zhang, J, Wu, M, Wang, G & Liu, H 2023, 'Epoxy‐rich Fe Single Atom Sites Boost Oxygen Reduction Electrocatalysis', Angewandte Chemie International Edition, vol. 62, no. 36. Zheng, L, Xiong, Y, Gao, Y, Yin, F, Szczygiełda, M, Krajewska, M, Vo, PHN, Jiang, C & Liu, H 2023, 'Tailoring the draw solution chemistry in the integrated electro-Fenton and forward osmosis for enhancing emerging contaminants removal: Performance, DFT calculation and degradation pathway', Science of The Total Environment, vol. 872, pp. 162155-162155. Zhigulin, I, Horder, J, Ivády, V, White, SJU, Gale, A, Li, C, Lobo, CJ, Toth, M, Aharonovich, I & Kianinia, M 2023, 'Stark Effect of Blue Quantum Emitters in Hexagonal Boron Nitride', Physical Review Applied, vol. 19, no. 4, p. 044011. Inhomogeneous broadening is a major limitation for the application of quantum emitters in hexagonal boron nitride to integrated quantum photonics. Here we demonstrate that so-called blue emitters with an emission wavelength of 436 nm are less sensitive to electric fields than other quantum emitters in hexagonal boron nitride. Our measurements reveal a weak, predominantly quadratic Stark effect that indicates a negligible transition dipole moment of the defect. Using these results, we discuss implications for the symmetry of the defect and use density-functional-theory simulations to identify a likely atomic structure of blue emitters in hexagonal boron nitride. Zhigulin, I, Yamamura, K, Ivády, V, Gale, A, Horder, J, Lobo, CJ, Kianinia, M, Toth, M & Aharonovich, I 2023, 'Photophysics of blue quantum emitters in hexagonal boron nitride', Materials for Quantum Technology, vol. 3, no. 1, pp. 015002-015002. Zhou, X, Liu, H, Liu, S, zhang, L, Wang, T, Wang, C & Su, D 2023, 'Constructing efficient ɑ-Fe2O3/g-C3N4/HNTs-loaded heterojunction photocatalysts for photocatalytic oxidative desulfurization: Influencing factors, kinetics, and mechanism', Fuel, vol. 332, pp. 126147-126147. The ɑ-Fe2O3/g-C3N4/HNTs (halloysite nanotubes) were prepared by a simple two-step calcination method. The HNTs skeleton increases the specific surface area of the material and enriches the adsorption reaction sites to prevent the reunion of g-C3N4, while ɑ-Fe2O3 further enhances the absorption in the visible region of g-C3N4. The transfer and separation of photogenerated carriers are promoted by the heterojunction structure constructed by ɑ-Fe2O3 and g-C3N4. The results showed that dibenzothiophene in model oil could be converted by 96.01 % in 3 h under visible light irradiation using ɑ-Fe2O3/g-C3N4/HNTs-10 as the photocatalyst. The electron paramagnetic resonance spectrometry, radical capture experiments, and gas chromatography-mass spectrometry indicated that hydroxyl radicals, holes, and superoxide radicals were the main active substances of the photocatalytic system. Based on the above experimental analysis, the photocatalytic desulfurization mechanism of ɑ-Fe2O3/g-C3N4/HNTs composites was proposed. This work opens a new path for the development of novel and advanced clay-based photocatalytic materials. Zhu, Y, Luo, X, Yu, Z, Wen, S, Bao, G, Zhang, L, Zhang, C & Xian, Y 2023, 'Dye-sensitized rare-earth-doped nanoprobe for simultaneously enhanced NIR-II imaging and precise treatment of bacterial infection', Acta Biomaterialia, vol. 170, pp. 532-542. Zhu, Y, Zhu, R, Guan, P, Li, M, Wan, T, Hu, L, Zhang, S, Liu, C, Su, D, Liu, Y, Liu, D, Li, Q, Yu, J & Chu, D 2023, 'Designing MXene-Wrapped AgCl@Carbon core shell cathode for robust quasi-solid-state Ag-Zn battery with ultralong cycle life', Energy Storage Materials, vol. 60, pp. 102836-102836. Zong, L, Yu, Y, Wang, J, Liu, P, Feng, W, Dai, X, Chen, L, Gunawan, C, Jimmy Yun, SL, Amal, R, Cheong, S, Gu, Z & Chen, Y 2023, 'Oxygen-vacancy-rich molybdenum carbide MXene nanonetworks for ultrasound-triggered and capturing-enhanced sonocatalytic bacteria eradication', Biomaterials, vol. 296, pp. 122074-122074. Zou, F, Liu, Y, Chen, Z, Zhanghao, K & Jin, D 2023, 'Fourier Channel Attention Powered Lightweight Network for Image Segmentation', IEEE Journal of Translational Engineering in Health and Medicine, vol. 11, pp. 252-260. Кордзахия, НЕ, Kordzahiya, NE, Новиков, АА, Novikov, AA, Ширяев, АН & Shiryaev, AN 2023, 'Kolmogorov's inequality for the maximum of the sum of random variables and its martingale analogues', Teoriya Veroyatnostei i ee Primeneniya, vol. 68, no. 3, pp. 565-585.
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Conferences
Alfredo, RD, Nie, L, Kennedy, P, Power, T, Hayes, C, Chen, H, McGregor, C, Swiecki, Z, Gaševic, D & Martinez-Maldonado, R 1970, ''That Student Should be a Lion Tamer!' StressViz: Designing a Stress Analytics Dashboard for Teachers', ACM International Conference Proceeding Series, LAK23: 13th International Learning Analytics and Knowledge Conference, Association for Computing Machinery (ACM), pp. 57-67.
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In recent years, there has been a growing interest in creating multimodal learning analytics (LA) systems that automatically analyse students' states that are hard to see with the 'naked eye', such as cognitive load and stress levels, but that can considerably shape their learning experience. A rich body of research has focused on detecting such aspects by capturing bodily signals from students using wearables and computer vision. Yet, little work has aimed at designing end-user interfaces that visualise physiological data to support tasks deliberately designed for students to learn from stressful situations. This paper addresses this gap by designing a stress analytics dashboard that encodes students' physiological data into stress levels during different phases of an authentic team simulation in the context of nursing education. We conducted a qualitative study with teachers to understand (i) how they made sense of the stress analytics dashboard; (ii) the extent to which they trusted the dashboard in relation to students' cortisol data; and (iii) the potential adoption of this tool to communicate insights and aid teaching practices.
Bracke, KR, Jacobs, M, Anckaert, J, Faiz, A, Van, GF, Verschraegen, S, Salhi, B, Schynkel, T, Venken, K, Elewaut, D, Hansbro, P, Brusselle, GG, Mestdagh, P & Seys, LJM 1970, 'Crosstalk Between Memory B Cells and Fibroblasts Contributes to COPD Pathogenesis', C108. IMMUNITY AND INFLAMMATION IN COPD: NOVEL FINDINGS, C108. IMMUNITY AND INFLAMMATION IN COPD: NOVEL FINDINGS, American Thoracic Society, pp. a6151-a6151.
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De Rubis, G, Paudel, KR & Dua, K 1970, 'Modernizing traditional medicine: nanoparticle-based drugdelivery systems to improve the delivery of phytoceuticals inmanaging chronic respiratory diseases', 21st International Symposioum on Advances in technology and business potential of new drug delivery systems, Controlled Release Society Indian Local Chapter, Mukesh Patel Auditorium, NMIMS Campus, Navyug Society, Mumbai-400047, India.
Faiz, A, Mahbub, R, Sabrina Boedijono, F, Timens, W, Nawijn, MC, Hansbro, P, D. Johansen, M, Brandsma, C-A, Heijink, IH, Massip, F, Stella de Biase, M, F. Schwarz, R, Adcock, IM, Chung, KF, Hiemstra, PS, Goulaouic, H, Heming Xing, H, Abdulai, RM, de Rinaldis, E, Cunoosamy, D, Harel, S, Lederer, DJ, C Nivens, M, Kerstjens, HAM, Hylkema, M & Van den Berge, M 1970, 'Using Single Cell Sequencing to Understand Treatment Response to Anti-IL33 Treatment in Chronic Obstructive Pulmonary Disease (COPD)', B107. COPD: FROM OMICS TO TREATMENT, American Thoracic Society 2023 International Conference, May 19-24, 2023 - Washington, DC, American Thoracic Society.
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Faiz, A, Pouwels, SD, Guryev, V, Boedijono, FS, Kerstjens, H, Klooster, K, Hartman, JE, Timens, W, Brandsma, C-A, Slebos, D-J & Berge, MVD 1970, 'Exome seq of patients with severe COPD and advanced emphysema', Molecular pathology and functional genomics, ERS International Congress 2023 abstracts, European Respiratory Society.
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Horder, J, White, SJU, Gale, A, Li, C, Watanabe, K, Taniguchi, T, Kianinia, M, Aharonovich, I & Toth, M 1970, 'Resonant Spectroscopy of Blue Quantum Emitters in Hexagonal Boron Nitride', CLEO 2023, CLEO: Fundamental Science, Optica Publishing Group.
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Jena, R, Singh, P & Mohanty, M 1970, 'PPAuth: A Privacy-Preserving Framework for Authentication of Digital Image', Springer Nature Switzerland, pp. 188-199.
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Johansen, M, Idrees, S, Boedijono, F, Miemczyk, S, Nguyen, D, Nichol, K, Wark, P, Faiz, A & Hansbro, P 1970, 'Late Breaking Abstract - Increased SARS-CoV-2 infection in asthmatic primary bronchial epithelial cells defined with single cell RNA-sequencing', Respiratory infections and bronchiectasis, ERS International Congress 2023 abstracts, European Respiratory Society.
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Karp, T, Faiz, A, Kerstjens, HAM, Nawijn, MC, Sun, Y, Kersten, ETG, Koppelman, GH, Kraft, M, Beghé, B, Rabe, KF, Kotz, M, Papi, A, Brightling, CE, Singh, D, Van Der Molen, T, Siddiqui, S, Guryev, V & Van Den Berge, M 1970, 'Late Breaking Abstract - Seasonal variation in nasal epithelium gene expression', Monitoring airway disease, ERS International Congress 2023 abstracts, European Respiratory Society.
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Mahbub, RM, Brandsma, C-A, Van Den Berge, M & Faiz, A 1970, 'Uncovering unique gene signatures for COPD through integrating human airway datasets', Molecular pathology and functional genomics, ERS International Congress 2023 abstracts, European Respiratory Society.
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Martin, L, Thomas, P, De Silva, P & Sirivivatnanon, V 1970, 'Durability Loss in Concrete Due to ASR-DEF, The Role of Aggregate Reactivity in Deleterious Delayed Ettringite Formation', Concrete 2023 Resilient and Sustainable Concrete: Breaking Down Barriers, Concrete Institute of Australia Biennial National Conference, Perth.
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Durability of concrete and cementitious materials is important to their worldwide usage in housing and infrastructure. Two known causes of durability loss in concrete are the alkali-silica reaction (ASR) and delayed ettringite formation (DEF), which are chemical processes with the potential for expansion, cracking, and strength loss in affected elements. There is significant overlap in the contributing factors for ASR and DEF, in particular pore solution alkalinity. DEF is of most concern for large, precast concrete structures, although in Australia reported cases of deleterious DEF have been in conjunction with mild or moderate ASR. Current guidelines regarding DEF are based on laboratory experiments in mortar specimens, and the role of the aggregate and ASR in concrete has been overlooked. Mitigation strategies for DEF involve temperature thresholds during curing, chemical limits for the binder, and the use of supplementary cementitious materials (SCMs) in the mix design. This study investigates the role of aggregate reactivity, curing temperature, and cement composition in the susceptibility of concrete elements to deleterious DEF, and the efficacy of fly-ash as an SCM in preventing deleterious ASR-DEF. Concrete specimens containing ASR-reactive aggregates were made with different binder and curing conditions, then monitored for expansion and strength loss over two years. Contributions towards the understanding of ASR-DEF mechanisms and the development of industry risk assessments in Australia are presented in this paper.
Martin, L, Thomas, P, De Silva, P & Sirivivatnanon, V 1970, 'Role of Aggregate Reactivity, Binder Composition, and Curing Temperature on the Delayed Ettringite Formation and Associated Durability Loss in Concrete', Springer Nature Singapore, pp. 83-91.
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Parker, H, Jahan, Z, Oliver, BGG, Faiz, A, Cheung, V, Cooper, WA & Kohonen-Corish, MRJ 1970, 'Defining tetranucleotide repeat instability as a marker of deficient DNA repair in lung cancer', RESPIROLOGY, WILEY, pp. 41-41.
Rahman, H, Nanda, P, Mohanty, M & Sheikh, N 1970, 'Anomaly Detection in Smart Grid Networks Using Power Consumption Data', Proceedings of the 20th International Conference on Security and Cryptography, 20th International Conference on Security and Cryptography, SCITEPRESS - Science and Technology Publications, Rome, Italy.
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Rathnayake, S, Reddy, K, Xenaki, D, Oliver, B, Van Den Berge, M & Faiz, A 1970, 'The ALDH3A1 gene suppresses Periostin gene expression in human airway epithelial cells exposed to cigarette smoke', Mechanisms of lung injury and repair, ERS International Congress 2023 abstracts, European Respiratory Society.
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Reddy, K, Xenaki, D, Rathanyake, S, Idrees, S, Boedijono, F, Weckmann, M, Padula, M, Van Den Berge, M, Faiz, A & Oliver, B 1970, 'The X and Y of inflammation, fibrosis and cell death in asthma', Molecular pathology and functional genomics, ERS International Congress 2023 abstracts, European Respiratory Society.
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Reddy, KD, Xenaki, D, Rathnayake, S, Zakarya, R, Idrees, S, Boedijono, F, Padula, M, Van Den Berge, M, Faiz, A & Oliver, B 1970, 'Cigarette smoking, COPD and the sex chromosomes', Molecular pathology and functional genomics, ERS International Congress 2023 abstracts, European Respiratory Society.
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Rehman, SF, Fuchs, D, Budden, KF, Quaranta, A, Shukla, SD, Horvat, J, Wood, LG, Wheelock, CE & Hansbro, PM 1970, 'Lipid Profiling Reveals Key Lipid Mediators in Cigarette Smoke-induced Experimental COPD', C108. IMMUNITY AND INFLAMMATION IN COPD: NOVEL FINDINGS, C108. IMMUNITY AND INFLAMMATION IN COPD: NOVEL FINDINGS, American Thoracic Society, pp. a6148-a6148.
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Saerens, G, Dursap, T, Solntsev, AS, Karvounis, A, Hesner, I, Duong, NMH, Regreny, P, Maeder, A, Morandi, A, Danescu, A, Chauvin, N, Chapman, RJ, Penuelas, J & Grange, R 1970, 'Single GaAs Nanowires for Near-Infrared Spontaneous Parametric Down-Conversion', CLEO 2023, CLEO: Fundamental Science, Optica Publishing Group.
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Sarma, A, Faiz, A, Ditz, B, Langelier, C, Nerella, S, Neff, N, Lyden, A, Caldera, S, Bolourchi, S, Calfee, CS, Bathoorn, E, Kerstjens, HAM, Van den Berge, M & Christenson, S 1970, 'Unsupervised Clustering of Sputum Transcriptomes Identifies Three COPD Exacerbation Endotypes With Differing Susceptibilities and Pathobiology', B101. OMICS STUDIES OF IMMUNE CELLS AND THE LUNG, American Thoracic Society 2023 International Conference, May 19-24, 2023 - Washington, DC, American Thoracic Society.
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Sharman, L, Rojahn, J, Wooster, E, Torpy, F, Fleck, R & Irga, P 1970, 'Green Roof and Photovoltaik comparative research in Sydney', Weltkongress Gebaudegrun / World Green Infrastructure Congress WGIC, Berlin, Germany.
Ton-That, C, Irvine, CP, Stopic, A, Yamamura, K, Westerhausen, MT & Phillips, MR 1970, 'Defect characterization of undoped and doped b-Ga2O3 (Conference Presentation)', Oxide-based Materials and Devices XIV, Oxide-based Materials and Devices XIV, SPIE.
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van Nijnatten, J, Faiz, A, Vermeulen, CJ, Timens, W, De Vries, M, Faner, R, Brandsma, C-A & Van Den Berge, M 1970, 'Differential DNA Methylation Associated with COPD and COPD Severity', Molecular pathology and functional genomics, ERS International Congress 2023 abstracts, European Respiratory Society.
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White, S, Yang, T, Dontschuk, N, Stewart, C, Li, C, Xu, Z-Q, Solntsev, AS, Kianinia, M, Stacey, A, Toth, M & Aharonovich, I 1970, 'Hexagonal boron nitride: a source for quantum photonics applications', Light-Emitting Devices, Materials, and Applications XXVII, Light-Emitting Devices, Materials, and Applications XXVII, SPIE.
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Reports
Ajani, P, Dove, M, Farrell, H, O'Connor, W, Tesoriero, M, Verma, A, Zammit, A, Hughes, B & Murray, S University of Technology Sydney 2023, Transforming Australian Shellfish Production: Cromartys Bay Harvest Area, Port Stephens. Report on Stage 1, December 2017-March 2021, Sydney, Australia, Sydney Australia.
Ajani, P, Dove, M, Farrell, H, O'Connor, W, Tesoriero, M, Verma, A, Zammit, A, Hughes, B & Murray, S University of Technology Sydney 2023, Transforming Australian Shellfish Production: Wapengo Front Lake Harvest Area, Wapengo Lake. Report on Stage 1, December 2018-March 2021, Sydney.
Ajani, P, Dove, M, Farrell, H, O'Connor, W, Tesoriero, M, Verma, A, Zammit, A, Hughes, B & Murray, S University of Technology Sydney 2023, Transforming Australian Shellfish Production: Wonboyn Lake A Harvest Area, Wonboyn River. Report on Stage 1, February 2018-February 2021, Sydney, Australia, Sydney, Australia.
Ajani, P, Dove, M, Farrell, H, O'Connor, W, Tesoriero, M, Verma, A, Zammit, A, Hughes, B, Parker, L & Murray, S University of Technology Sydney 2023, Transforming Australian Shellfish Production: Gogleys Lagoon Harvest Area, Camden Haven River. Report on Stage 1, October 2017-March 2021, Sydney.
Ajani, P, Vig, D, Dove, M, Farrell, H, O'Connor, W, Tesoriero, M, Verma, A, Zammit, A, Hughes, B & Murray, S University of Technology Sydney 2023, Transforming Australian Shellfish Production: Quibray Bay Harvest Area, Georges River. Report on Stage 1, October 2017-March 2021, Sydney, Australia.
Devitt, SJ & Langford, NK Standards Australia 2023, At the Intersection between Quantum Communication Networks and Standardisation, pp. 1-47, Sydney, Australia.
Langford, NK & Devitt, SJ Standards Australia 2023, At the Intersection Between Scalable Quantum Computing and Standardisation, pp. 1-42, Sydney, Australia.
Langford, NK & Devitt, SJ Standards Australia 2023, Quantum Education, Training and Literacy: Laying Good Foundations for the Future Quantum Industry, Sydney, Australia.
Langford, NK & Devitt, SJ Standards Australia 2023, Quantum Technologies and Standardisation Globally and in Australia, Sydney, Australia.
Other
Abbriano, RM, George, J, Kahlke, T, Commault, AS & Fabris, M 2023, 'Real time mobilization of a novel diatomMutator-Like Element(MULE) transposon to inactivate the uridine monophosphate synthase (UMPS) locus inPhaeodactylum tricornutum', Cold Spring Harbor Laboratory.
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Abell-King, C, Pokhrel, A, Rice, SA, Duggin, IG & Söderström, B 2023, 'Direct visualization of bacterial multispecies infection and symbiotic interactions within human bladder epithelial cells', Cold Spring Harbor Laboratory.
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Bottomley, A, Motha, A, Kruik, S & Cole, L 2023, 'Research Data Management in a Core Imaging Facility: Common challenges and best practice'.
Briceno, VF, Cook, AM, Courtney, JSK, Arnold, PA, Gallagher, RV, French, K, Bravo, LA, Nicotra, AB & Leigh, A 2023, 'Drivers of thermal tolerance breadth of plants across contrasting biomes: do mean or seasonality in climate indices matter more?', Cold Spring Harbor Laboratory.
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Brunet, M, Duff, NL, Rigaut-Jalabert, F, Romac, S, Barbeyron, T & Thomas, F 2023, 'Seasonal dynamics of a glycan-degrading flavobacterial genus in a tidally-mixed coastal temperate habitat', Cold Spring Harbor Laboratory.
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Budden, K, Awatade, N, Gallop, M, Paudel, KR, Nichol, K, Hegarty, K, Hansbro, P & Wark, P 2023, 'Bushfire-derived particulates impair epithelial cilia and chloride efflux channel functions'.
Budden, KF, Shukla, SD, Bowerman, KL, Gellatly, S, Wood, DLA, Lachner, N, Idrees, S, Patel, VK, Faiz, A, Rehman, SF, Donovan, C, Alemao, CA, Shen, SJ, Vanka, KS, Mason, J, Haw, TJ, Fricker, M, Keely, S, Hansbro, NG, Belz, GT, Horvat, JC, Ashhurst, TM, van Vreden, C, McGuire, HM, de St Groth, BF, King, NJC, Crossett, B, Cordwel, SJ, Bonaguro, L, Schultze, JL, Forster, SC, Cooper, MA, Segal, LN, Vaughan, A, Collins, PF, Bowman, RV, Fong, KM, Yang, IA, Wark, PA, Dennis, PG, Hugenholtz, P & Hansbro, PM 2023, 'Fecal microbial transfer and complex carbohydrates mediate protection against COPD', Cold Spring Harbor Laboratory.
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Cai, Y, Shang, Y, Qin, X, Jin, D & zhou, J 2023, 'Anisotropic surface quenching of upconversion nanoparticles', Research Square Platform LLC.
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Carter, DJ, Byrne, MK, Djordjevic, S, Robertson, H, Labbate, M, Morgan, B & Billington, L 2023, 'Antimicrobial Resistance Surveillance Technology: Keys to Success', OSF Preprints.
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Carter, DJ, Byrne, MK, Djordjevic, S, Robertson, H, Labbate, M, Morgan, B & Billington, L 2023, 'Public Support for Next-Generation Antimicrobial Resistance Surveillance', OSF Preprints.
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Cook, A, Rezende, E, Petrou, K & Leigh, A 2023, 'Beyond a single temperature threshold: applying a cumulative thermal stress framework to plant heat tolerance', Authorea.
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de Almeida Oliveira, M, Lopes Amorim, N, Torres, L, Prazeres, PHDM, Junior, REM, Vaughan, A, Wadhwa, R, Majumder, R, Das, S, Paudel, KR, Evans, A, Moreira, TG, Maioli, TU, Hansbro, P & Faria, AMC 2023, 'Omega 3 anti-inflammatory effects are microbiota dependent: unravelling the gut-lung axis'.
Elder, M, Gardam, G, Piggott, A, Spriano, D & Townsend, K 2023, 'Graphs and groups with unique geodesics'.
Espinoza-Vergara, G, Hoque, MM, Noorian, P, To, J, Moon, JM, Rice, SA & McDougald, D 2023, 'Single cell RNA-seq reveals that the Vibrio cholerae MakA toxin is required for killing of Tetrahymena pyriformis and for survival in protozoan expelled food vacuoles', Research Square Platform LLC.
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Gale, A, Scognamiglio, D, Zhigulin, I, Whitefield, B, Kianinia, M, Aharonovich, I & Toth, M 2023, 'Manipulating the Charge State of Spin Defects in Hexagonal Boron Nitride'.
Ghaly, TM, Focardi, A, Elbourne, LDH, Sutcliffe, B, Humphreys, W, Paulsen, IT & Tetu, SG 2023, 'Stratified microbial communities in Australia’s only anchialine cave are taxonomically novel and drive chemotrophic energy production via coupled nitrogen-sulphur cycling', Cold Spring Harbor Laboratory.
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Gladding, JM, Lingawi, NW, Leung, B, Kendig, MD, Chieng, BC & Laurent, V 2023, 'High fat diet allows food-predictive stimuli to energize action performance in the absence of hunger, without distorting insulin signaling on accumbal cholinergic interneurons', Cold Spring Harbor Laboratory.
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Gupta, A 2023, 'Why Western Sydney is feeling the heat from climate change more than the rest of the city', The Conversation.
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https://theconversation.com/why-western-sydney-is-feeling-the-heat-from-climate-change-more-than-the-rest-of-the-city-201477
Hamm, JN, Liao, Y, Kügelgen, AV, Dombrowski, N, Landers, E, Brownlee, C, Johansson, EMV, Whan, RM, Baker, MAB, Baum, B, Bharat, TAM, Duggin, IG, Spang, A & Cavicchioli, R 2023, 'The parasitic lifestyle of an archaeal symbiont', Cold Spring Harbor Laboratory.
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Handy, R 2023, 'Researchers flip coins 350,000 times to find out if odds truly are 50/50', New Atlas.
Hennessey, M, Whitefield, B, Gale, A, Scott, JA, Kianinia, M, Aharonovich, I & Toth, M 2023, 'Framework for engineering of spin defects in hexagonal boron nitride by focused ion beams'.
Idrees, S, Pathinayake, P, Faiz, A, Wark, P & Hansbro, P 2023, 'Identification of genes and master regulators driving COPD progression'.
Jin, D, Mi, C, Zhang, X, Yang, C, Wu, J, Chen, X, Ma, C, Wu, S, Yang, Z, Qiao, P, Liu, Y, Wu, W, Guo, Z, Liao, J, zhou, J, Guan, M, Liang, C & Liu, C 2023, 'Bone Disease Imaging through the Near-Infrared-II Window', Research Square Platform LLC.
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Katona, K, Sklibosios Nikitopoulos, C & Schlögl, E 2023, 'A Price Mechanism Survey of the Australian National Electricity Market'.
Lam, M & Hamidian, M 2023, 'Examining the role ofAcinetobacter baumanniiPlasmid Types in Disseminating Antimicrobial Resistance', bioRxiv.
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Li, W, Lin, A, Hutton, M, Dhaliwal, H, Nadel, J, Rodor, J, Tumanov, S, Örd, T, Hadden, M, Mokry, M, Mol, BM, Pasterkamp, G, Padula, MP, Geczy, CL, Ramaswamy, Y, Sluimer, JC, Kaikkonen, MU, Stocker, R, Baker, AH, Fisher, EA, Patel, S & Misra, A 2023, 'Colchicine promotes atherosclerotic plaque stability independently of inflammation', Cold Spring Harbor Laboratory.
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Mao, H, Szafranska, K, Kruse, L, Holte, C, Wolfson, DL, Ahluwalia, BS, Whitchurch, CB, Cole, L, Lockwood, GP, Diekmann, R, Le Couteur, D, Cogger, VC & McCourt, PAG 2023, 'Effect of caffeine and other xanthines on liver sinusoidal endothelial cell ultrastructure', Cold Spring Harbor Laboratory.
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McKnight, DJE, Wong, J, Okoh, EB, Snijders, F, Lidbetter, F, Webster, J, Haughton, M, Darling, AE, Djordjevic, SP, Bogema, DR & Chapman, T 2023, 'Xanthomonas rydalmerenesissp. nov., a novel plant bacteria isolated fromFragaria x ananassa', Cold Spring Harbor Laboratory.
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Mediati, DG, Dan, W, Lalaouna, D, Dinh, H, Pokhrel, A, Stinear, TP, Cain, AK & Tree, JJ 2023, 'The 3’ UTR ofvigRis required for virulence inStaphylococcus aureusand has expanded through STAR sequence repeat insertions', Cold Spring Harbor Laboratory.
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Menictas, M, Oates, CJ & Wand, MP 2023, 'Real-time Semiparametric Regression via Sequential Monte Carlo'.
Mi, C, Zhang, X, Yang, C, Wu, J, Chen, X, Ma, C, Wu, S, Yang, Z, Qiao, P, Liu, Y, Wu, W, Guo, Z, Liao, J, Zhou, J, Guan, M, Liang, C, Liu, C & Jin, D 2023, 'Nanoparticles Passive Targeting Allows Optical Imaging of Bone Diseases'.
Miller, SM, Herdean, A, Gupta, V, Signal, B, Abbriano, RM, Ralph, PJ & Pernice, M 2023, 'FACS-mediated selection enhances growth and carotenoid production in subpopulations of Phaeodactylum tricornutum', Research Square Platform LLC.
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Mills, J, Gebhard, LJ, Schubotz, F, Shevchenko, A, Speth, DR, Liao, Y, Duggin, IG, Marchfelder, A & Erdmann, S 2023, 'Extracellular vesicles of Euryarchaeida: precursor to eukaryotic membrane trafficking', Cold Spring Harbor Laboratory.
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Mishra, N, Bhatt, S, Paudel, KR, Hansbro, P & Dua, K 2023, 'Synbiotics for the management of Cancer', Springer.
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This book illustrates the significance of probiotics and prebiotics for the management of various types of cancers.
Nomura, H, Wu, M, Song, J, Hung, A, Tran, S, TA, H, Akther, F, Wu, Y, Johansen, M, Chew, K, Kumar, V, Woodruff, T, Clark, R, Koehbach, J, Lomonte, B, Rosado, C, Thomas, M, Boudes, M, Reboul, C, Rash, L, Gallo, L, Essid, S, Elmlund, D, Miemczyk, S, Hansbro, N, Saunders, B, Britton, W, Sly, P, Yamamoto, A, Fernández, J, Moyle, P, Short, K, Hansbro, P, Kuruppu, S, Smith, I & Rajapakse, N 2023, 'Development of a novel angiotensin converting enzyme 2 stimulator with broad implications in SARS-CoV2 infection and type 1 diabetes', Research Square Platform LLC.
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Nonahal, M, Li, C, Ren, H, Spencer, L, Kianinia, M, Toth, M & Aharonovich, I 2023, 'Monolithic Platform for Integrated Quantum Photonics with Hexagonal Boron Nitride'.
Paudel, KR 2023, 'Impact of bushfire smoke particulate matter exposure on respiratory health.'.
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Invited speaker at TSANZ Symposium - Breathing in vitro - Exposure of in vitro models to aerosols Monday, 27 March 2023 15:30 - 17:00
Phan, TH, Shi, H, Denes, CE, Cole, AJ, Wang, Y, Cheng, YY, Hesselson, D, Neely, GG, Jang, J-H & Chrzanowski, W 2023, 'Advanced pathophysiology mimicking lung models for accelerated drug discovery', Research Square Platform LLC.
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Rajapaksha, RWPM, Attanayaka, DPSTG, Vivehananthan, K, Linacre, A & McNevin, D 2023, 'The Risk of Pathogens Associated with Seed Potatoes (Solanum tuberosum) Imported to Sri Lanka : A Metagenomic Approach', Research Square Platform LLC.
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Ren, B, He, H, Cao, M, Gao, Y, Zheng, P, Yan, S, Zhong, J-H, Wang, L & Jin, D 2023, 'Noise Learning of Instruments for High-contrast, High-resolution and Fast Hyperspectral Microscopy and Nanoscopy', Research Square Platform LLC.
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Rennie, C, Sives, C, Boyton, I, Diaz, D, Gorrie, CA, Vittorio, O, Collins-Praino, L & Care, A 2023, 'In vivofate of systemically administered encapsulin protein nanocages and implications for their use in targeted drug delivery', Cold Spring Harbor Laboratory.
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Robertson, IO, Scholten, SC, Singh, P, Healey, AJ, Meneses, F, Reineck, P, Abe, H, Ohshima, T, Kianinia, M, Aharonovich, I & Tetienne, J-P 2023, 'Detection of paramagnetic spins with an ultrathin van der Waals quantum sensor'.
Ryder, WG, Graziotto, ME, New, EJ & Gale, PA 2023, 'Subcellular targeted anionophores', ChemRxiv.
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Sadaf, T, Paudel, KR, Chung, F, Neely, G, Faiz, A & Hansbro, P 2023, 'Genome-wide CRISPR-Cas9 Knock-out library screening against cigarette smoke'.
Sadaf, T, Paudel, KR, Gillis, C, Nijnatten, JV, Kim, R, Beckett, EL, Deane, A, Faiz, A & Hansbro, P 2023, 'Integration of miRNA and gene expression profiles from lung tissues of CS-induced COPD'.
Scammell, H & Sushkov, O 2023, 'Exciton condensation in biased bilayer graphene'.
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Scholten, SC, Singh, P, Healey, AJ, Robertson, IO, Haim, G, Tan, C, Broadway, DA, Wang, L, Abe, H, Ohshima, T, Kianinia, M, Reineck, P, Aharonovich, I & Tetienne, J-P 2023, 'Multi-species optically addressable spin defects in a van der Waals material'.
Sortino, L, Gale, A, Kühner, L, Li, C, Biechteler, J, Wendisch, FJ, Kianinia, M, Ren, H, Toth, M, Maier, SA, Aharonovich, I & Tittl, A 2023, 'Optically addressable spin defects coupled to bound states in the continuum metasurfaces'.
Strudwick, P, Camp, EF, Seymour, J, Roper, C, Edmondson, J, Howlett, L & Suggett, DJ 2023, 'Assessing Efficacy of Plastic-free Alternative Ties For Coral Propagation in Reef Restoration', Research Square Platform LLC.
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Strudwick, P, Seymour, J, Camp, E, Roper, C, Edmondson, J, Howlett, L & Suggett, D 2023, 'Bacterial communities associated with corals out-planted on the Great Barrier Reef are inherently dynamic over space and time', Research Square Platform LLC.
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Stylianou, N, Sebina, I, Matigian, N, Monkman, J, Doehler, H, Röhl, J, Allenby, M, Nam, A, Pan, L, Rockstroh, A, Sadeghirad, H, Chung, K, Sobanski, T, O’Byrne, K, Rebutini, PZ, Machado-Souza, C, Stonoga, ETS, Warkiani, ME, Salomon, C, Short, K, McClements, L, de Noronha, L, Huang, R, Belz, GT, Souza-Fonseca-Guimaraes, F, Clifton, V & Kulasinghe, A 2023, 'Whole transcriptome profiling of placental pathobiology in SARS-CoV-2 pregnancies identifies a preeclampsia-like gene signature', Cold Spring Harbor Laboratory.
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Tobin, L, Jarocki, VM, Kenyon, J, Drigo, B, Donner, E, Djordjevic, SP & Hamidian, M 2023, 'Genomic Analysis of Diverse EnvironmentalAcinetobacterIsolates Identifies Plasmids, Antibiotic Resistance Genes, and Capsular Polysaccharides Shared with Clinical Strains', Cold Spring Harbor Laboratory.
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Tran, TN, Gale, A, Whitefield, B, Toth, M, Aharonovich, I & Kianinia, M 2023, 'Coupling spin defects in hexagonal boron nitride to a microwave cavity'.
Valova, V, Gorrie, C, McGrath, K, Borra, A, Sanchez, L & Cole, L 2023, 'Establishing a Tissue Clearing Pipeline at the Microbial Imaging Facility, UTS'.
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Optical tissue clearing techniques can improve the permeability of biological specimens to light and molecular probes, and thereby make them amenable to in toto imaging at cellular resolution. Recent advances in these techniques have demonstrated their utility for a range of specimens with different chemical and physical compositions, and enabled advances in fields such as neuroscience, developmental biology, immunology, and oncology. To facilitate access to these techniques, a tissue clearing pipeline was established at the Microbial Imaging Facility (MIF) at UTS. Three case studies are presented to highlight the challenges associated with designing clearing experiments for distinct sample types and research applications, including (1) visualising astrocytes in rat brain and spinal cord; (2) assessing VCAM-1 (inflammatory marker) expression in the mouse heart; and (3) examining the 3D structure and composition of breast cancer tumour and mammary gland pieces. In each case, a different clearing approach was adapted to suit a range of interacting variables, for example, improving sample transparency; maintaining tissue integrity; preserving molecules of interest and antigenicity; and ensuring compatibility with available imaging systems and computing resources. The need to tailor clearing pipelines to specific samples and research applications can limit the practicality of offering tissue clearing as a service in a Core Facility. However, as demonstrated by the current case studies, having capacity to offer expertise and access to a subset of protocols can help increase uptake of these techniques and enable users to progress their research on cleared specimens.
Vlaanderen, EJ, Ghaly, TM, Moore, LR, Focardi, A, Paulsen, IT & Tetu, SG 2023, 'Plastic Leachate Exposure Drives Antibiotic Resistance and Virulence in Marine Bacterial Communities', Cold Spring Harbor Laboratory.
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Wenk, EH, Sauquet, H, Gallagher, RV, Brownlee, R, Boettiger, C, Coleman, D, Yang, S, Auld, T, Barrett, R, Brodribb, T, Choat, B, Dun, L, Ellsworth, D, Gosper, C, Guja, L, Jordan, GJ, Breton, TL, Leigh, A, Lu-Irving, P, Medlyn, B, Nolan, R, Ooi, M, Sommerville, KD, Vesk, P, White, M, Wright, IJ & Falster, DS 2023, 'The AusTraits Plant Dictionary', Cold Spring Harbor Laboratory.
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Xi, P, Xu, X, Wang, W, Qiao, L, Fu, Y, Ge, X, Zhao, K, Zhanghao, K, Guan, M, Chen, X, Li, M & Jin, D 2023, 'Ultra-high spatio-temporal resolution imaging with parallel acquisition-readout structured illumination microscopy (PAR-SIM)', Research Square Platform LLC.
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Xiang, M, Jiang, Y, zhou, J, Bao, G, Luo, X, Zhang, L, Jin, D, Xian, Y & Zhang, C 2023, 'NIR Light-Controlled DNA Nanodevice for Amplified mRNA Imaging and Precise Gene Therapy', Research Square Platform LLC.
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Zhigulin, I, Yamamura, K, Ivády, V, Gale, A, Horder, J, Lobo, CJ, Kianinia, M, Toth, M & Aharonovich, I 2023, 'Photophysics of blue quantum emitters in hexagonal Boron Nitride'.
Zhou, Y, Garces, LP, Shen, Y, Sherris, M & Ziveyi, J 2023, 'Age-Dependent Multi-Cohort Affine Mortality Model with Cohort Correlation', CEPAR Working Paper.
UTS acknowledges the Gadigal people of the Eora Nation, the Boorooberongal people of the Dharug Nation, the Bidiagal people and the Gamaygal people, upon whose ancestral lands our university stands. We would also like to pay respect to the Elders both past and present, acknowledging them as the traditional custodians of knowledge for these lands.
